Rorug06G0464900

Carbon catabolite repressor protein 4 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0012263
Physical Location & Seq
Reverse (-)
58945674 .. 58947889
2216 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0464900.1

Sequence Viewer

Length: 627 bp
ATGAGTGCTCTTGGAGTAGTCGGTCTAGCCCTGACCCTACGTGCCTATGACTTCGTTTCTCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAAGATTCTCTTAAACGAAGGTATTCGTGCTTGGATGTATCATCCCAAACAGTGGATACTACAAGTATCATCCCAAACAGTGGTATCATCCCAAATAGAGGTGCTACTAGTATCATCCCAAACAGTGGATATTACAAGAGAGGGTTGCCAAGCCAAATGTGGCAATGTCAGCATTCCCTACCCGTTCGGAACAAGAGAGGGTTGTTACTATGATGAGGATTTCCTCATTACTTGTGATAGCACAAGTTATAACCCTCCGAAGCCATTCCTGAGAAAGAGTGACATTGAGGTCACAAACATATCCATTGATGGGAAGCTCTACATTACTCAAGACATAGCCATGGCTTGTTATACCAAATCAGGTGTGCCCTGGGAAGGCAACTACAGCCCTTATCTTTCTTTGAAAAAGTTCTACATCTCAGACACCGATAACAAATTCATAGGTGTAGGTTGCGACACCTATGCCGAAATTAGGGGCTTCCAGGGTACAAGGTGGGTGCTTGTCGAAATGTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exo_endo_phos

Protein Analysis

208

Amino Acids

23.53

Weight (kDa)

4.88

Isoelectric Point (pI)

51.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GUB_WAK_bind PF13947 86 - 141 2.6e-11 Wall-associated receptor kinase galacturonan-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012263)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18500 AT3G18500 AT3G18500 AT3G18500
fragaria_vesca FvH4_5g12590
malus_domestica MD06G1212300.v1.1
prunus_persica Prupe.5G218400_v2.0.a1
pyrus_communis pycom06g18950
rosa_chinensis RchiOBHm_Chr7g0184741
rosa_laevigata RLG00000004954
rosa_multiflora Rmu_co8486587.1_g000001 Rmu_ssc0000289.1_g000017
rosa_roxburghii Rroxscaffold_3G00269380
rosa_rugosa Rorug06G0464900
rosa_samantha Rh7AG078000 Rh7BG069300 Rh7CG070100 Rh7DG069500
rosa_wichuraiana Rw7G005740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 360
AasI GACNNNNNNGTC 1 cut(s) 398
AccB7I CCANNNNNTGG 3 cut(s) 162, 190, 235
AciI CCGC 1 cut(s) 77
AclWI GGATC 1 cut(s) 77
AcsI RAATTY 2 cut(s) 89, 545
AfaI GTAC 1 cut(s) 598
AfiI CCNNNNNNNGG 8 cut(s) 76, 162, 190, 208, 235, 420, 485, 582
AgsI TTSAA 1 cut(s) 514
AhlI ACTAGT 1 cut(s) 217
AjnI CCWGG 2 cut(s) 479, 591
AluBI AGCT 1 cut(s) 427
AluI AGCT 1 cut(s) 427
Alw21I GWGCWC 1 cut(s) 10
Alw26I GTCTC 1 cut(s) 89
AlwI GGATC 1 cut(s) 77
ApeKI GCWGC 1 cut(s) 74
ApoI RAATTY 2 cut(s) 89, 545
Asp700I GAANNNNTTC 3 cut(s) 132, 374, 518
BaeGI GKGCMC 1 cut(s) 480
BaeI ACNNNNGTAYC 2 cut(s) 177, 210
Bbv12I GWGCWC 1 cut(s) 10
BbvI GCAGC 1 cut(s) 86
BccI CCATC 1 cut(s) 413
BcgI CGANNNNNNTGC 2 cut(s) 554, 588
BciT130I CCWGG 2 cut(s) 481, 593
BciVI GTATCC 1 cut(s) 159
BcoDI GTCTC 1 cut(s) 89
BcuI ACTAGT 1 cut(s) 217
BfaI CTAG 2 cut(s) 26, 218
BfmI CTRYAG 1 cut(s) 493
BfuI GTATCC 1 cut(s) 159
BisI GCNGC 1 cut(s) 75
BlsI GCNGC 1 cut(s) 76
Bme1390I CCNGG 2 cut(s) 481, 593
BmrFI CCNGG 2 cut(s) 481, 593
BpuEI CTTGAG 1 cut(s) 423
BsaAI YACGTR 1 cut(s) 41
BsaJI CCNNGG 4 cut(s) 450, 479, 480, 592
Bsc4I CCNNNNNNNGG 8 cut(s) 76, 162, 190, 208, 235, 420, 485, 582
Bse3DI GCAATG 1 cut(s) 280
BseBI CCWGG 2 cut(s) 481, 593
BseDI CCNNGG 4 cut(s) 450, 479, 480, 592
BseGI GGATG 5 cut(s) 150, 151, 179, 197, 224
BseLI CCNNNNNNNGG 8 cut(s) 76, 162, 190, 208, 235, 420, 485, 582
BseMI GCAATG 1 cut(s) 280
BseMII CTCAG 3 cut(s) 74, 371, 543
BseSI GKGCMC 1 cut(s) 480
BseXI GCAGC 1 cut(s) 86
BsgI GTGCAG 1 cut(s) 93
BsiHKAI GWGCWC 1 cut(s) 10
BslI CCNNNNNNNGG 8 cut(s) 76, 162, 190, 208, 235, 420, 485, 582
BsmAI GTCTC 1 cut(s) 89
BsmI GAATGC 1 cut(s) 282
Bsp1286I GDGCHC 2 cut(s) 10, 480
Bsp143I GATC 1 cut(s) 82
Bsp19I CCATGG 1 cut(s) 450
BspACI CCGC 1 cut(s) 77
BspCNI CTCAG 3 cut(s) 73, 372, 542
BspPI GGATC 1 cut(s) 77
BsrDI GCAATG 1 cut(s) 280
BssECI CCNNGG 4 cut(s) 450, 479, 480, 592
BssMI GATC 1 cut(s) 82
BssT1I CCWWGG 1 cut(s) 450
Bst2UI CCWGG 2 cut(s) 481, 593
Bst4CI ACNGT 3 cut(s) 162, 190, 235
BstBAI YACGTR 1 cut(s) 41
BstDEI CTNAG 3 cut(s) 60, 380, 529
BstDSI CCRYGG 1 cut(s) 450
BstF5I GGATG 5 cut(s) 150, 151, 179, 197, 224
BstKTI GATC 1 cut(s) 85
BstMAI GTCTC 1 cut(s) 89
BstMBI GATC 1 cut(s) 82
BstMWI GCNNNNNNNGC 2 cut(s) 279, 495
BstNI CCWGG 2 cut(s) 481, 593
BstSCI CCNGG 2 cut(s) 479, 591
BstSFI CTRYAG 1 cut(s) 493
BstSLI GKGCMC 1 cut(s) 480
BstV1I GCAGC 1 cut(s) 86
BstX2I RGATCY 1 cut(s) 82
BstYI RGATCY 1 cut(s) 82
BsuI GTATCC 1 cut(s) 159
BtgI CCRYGG 1 cut(s) 450
BtsCI GGATG 5 cut(s) 150, 151, 179, 197, 224
BtsIMutI CAGTG 3 cut(s) 167, 195, 240
Csp6I GTAC 1 cut(s) 597
CviAII CATG 1 cut(s) 451
CviJI RGCY 8 cut(s) 29, 263, 373, 427, 449, 455, 498, 588
CviKI_1 RGCY 8 cut(s) 29, 263, 373, 427, 449, 455, 498, 588
CviQI GTAC 1 cut(s) 597
DdeI CTNAG 3 cut(s) 60, 380, 529
DpnI GATC 1 cut(s) 84
DpnII GATC 1 cut(s) 82
DrdI GACNNNNNNGTC 1 cut(s) 398
DseDI GACNNNNNNGTC 1 cut(s) 398
Eco130I CCWWGG 1 cut(s) 450
EcoRII CCWGG 2 cut(s) 479, 591
EcoT14I CCWWGG 1 cut(s) 450
ErhI CCWWGG 1 cut(s) 450
FaeI CATG 1 cut(s) 454
FalI AAGNNNNNCTT 2 cut(s) 104, 136
FatI CATG 1 cut(s) 450
Fnu4HI GCNGC 1 cut(s) 75
FokI GGATG 5 cut(s) 138, 157, 166, 184, 211
Fsp4HI GCNGC 1 cut(s) 75
FspBI CTAG 2 cut(s) 26, 218
GluI GCNGC 1 cut(s) 75
Hin1II CATG 1 cut(s) 454
HinfI GANTC 1 cut(s) 115
Hpy188I TCNGA 3 cut(s) 299, 369, 532
Hpy188III TCNNGA 4 cut(s) 62, 86, 379, 440
HpyAV CCTTC 2 cut(s) 122, 479
HpyCH4III ACNGT 3 cut(s) 162, 190, 235
HpyCH4IV ACGT 1 cut(s) 40
HpyCH4V TGCA 1 cut(s) 74
HpyF10VI GCNNNNNNNGC 2 cut(s) 279, 495
HpyF3I CTNAG 3 cut(s) 60, 380, 529
HpySE526I ACGT 1 cut(s) 40
Hsp92II CATG 1 cut(s) 454
Kzo9I GATC 1 cut(s) 82
LpnPI CCDG 9 cut(s) 44, 47, 99, 392, 456, 466, 493, 578, 605
Lsp1109I GCAGC 1 cut(s) 86
MaeI CTAG 2 cut(s) 26, 218
MaeII ACGT 1 cut(s) 40
MaeIII GTNAC 3 cut(s) 314, 389, 400
MalI GATC 1 cut(s) 84
MboI GATC 1 cut(s) 82
MboII GAAGA 1 cut(s) 92
MflI RGATCY 1 cut(s) 82
MhlI GDGCHC 2 cut(s) 10, 480
MluCI AATT 3 cut(s) 89, 545, 579
MnlI CCTC 7 cut(s) 202, 244, 301, 319, 344, 375, 391
MroXI GAANNNNTTC 3 cut(s) 132, 374, 518
MseI TTAA 1 cut(s) 122
MslI CAYNNNNRTG 1 cut(s) 449
MspA1I CMGCKG 1 cut(s) 77
MspR9I CCNGG 2 cut(s) 481, 593
Mva1269I GAATGC 1 cut(s) 282
MvaI CCWGG 2 cut(s) 481, 593
MwoI GCNNNNNNNGC 2 cut(s) 279, 495
NcoI CCATGG 1 cut(s) 450
NdeII GATC 1 cut(s) 82
NlaIII CATG 1 cut(s) 454
NmuCI GTSAC 2 cut(s) 389, 400
PasI CCCWGGG 1 cut(s) 480
PctI GAATGC 1 cut(s) 282
PdmI GAANNNNTTC 3 cut(s) 132, 374, 518
PfeI GAWTC 1 cut(s) 115
PflMI CCANNNNNTGG 3 cut(s) 162, 190, 235
PkrI GCNGC 1 cut(s) 76
Ppu21I YACGTR 1 cut(s) 41
PsiI TTATAA 1 cut(s) 360
Psp6I CCWGG 2 cut(s) 479, 591
PspGI CCWGG 2 cut(s) 479, 591
PsuI RGATCY 1 cut(s) 82
RsaI GTAC 1 cut(s) 598
RsaNI GTAC 1 cut(s) 597
RseI CAYNNNNRTG 1 cut(s) 449
SaqAI TTAA 1 cut(s) 122
SatI GCNGC 1 cut(s) 75
Sau3AI GATC 1 cut(s) 82
ScrFI CCNGG 2 cut(s) 481, 593
SduI GDGCHC 2 cut(s) 10, 480
SfcI CTRYAG 1 cut(s) 493
SmiMI CAYNNNNRTG 1 cut(s) 449
SmlI CTYRAG 1 cut(s) 438
SmoI CTYRAG 1 cut(s) 438
SpeI ACTAGT 1 cut(s) 217
Sse9I AATT 3 cut(s) 89, 545, 579
SsiI CCGC 1 cut(s) 77
SspMI CTAG 2 cut(s) 26, 218
StyD4I CCNGG 2 cut(s) 479, 591
StyI CCWWGG 1 cut(s) 450
TaaI ACNGT 3 cut(s) 162, 190, 235
TaiI ACGT 1 cut(s) 43
TaqI TCGA 1 cut(s) 615
TaqII GACCGA 1 cut(s) 11
TasI AATT 3 cut(s) 89, 545, 579
TfiI GAWTC 1 cut(s) 115
Tru1I TTAA 1 cut(s) 122
Tru9I TTAA 1 cut(s) 122
TscAI CASTG 3 cut(s) 167, 195, 240
TseFI GTSAC 2 cut(s) 389, 400
TseI GCWGC 1 cut(s) 74
Tsp45I GTSAC 2 cut(s) 389, 400
TspDTI ATGAA 1 cut(s) 538
TspGWI ACGGA 1 cut(s) 59
TspRI CASTG 3 cut(s) 167, 195, 240
Van91I CCANNNNNTGG 3 cut(s) 162, 190, 235
XapI RAATTY 2 cut(s) 89, 545
XcmI CCANNNNNNNNNTGG 1 cut(s) 266
XmnI GAANNNNTTC 3 cut(s) 132, 374, 518
XspI CTAG 2 cut(s) 26, 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.