MD06G1212300.v1.1

Carbon catabolite repressor protein 4 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0012263
Physical Location & Seq
Reverse (-)
34475635 .. 34479853
4219 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1212300.v1.1.491

Sequence Viewer

Length: 1368 bp
ATGCGGTGCGACGCTTCCTCTTGGCTCTGCGGTGGCCACGTTTCCGTCGCAACAACCGCACCGACTGCCACCACCGCTAGCCCCTCCTCCTCCTTTCTCTGCAAGACCACCGTTTCTTGCTGCACCGCCGCTCCTAAAGGCTCGTCCTCCTCATCATCGTCGTCTACTGGTTACGAGACTAGTCGTCCGTGGTACAAGCAGGAACAGTACAGTCATGCTCCGCCGGACGTCGTACGCCATTGGATCCAAGCAGAAAATCAACCACTCGCTTCTCGAGATAGATTTTCTGTTGCATCATATAACATTTTGGGGGATCGAAATGCTTTCTGGCATAGAGATATGTACCGGAATGTGCCTTCCAAATATCTCAAATGGGACCATCGTAGGAGGGTCATATGCGATGAACTTGCGGAATGGAACCCTGATATAATGTGTTTGCAAGAAGTAGACAAGTATTTTGAGCTCTCGGAGATTCTAGCGAAAGTGGGATATGTCGGATCATATAAGAGACGCACTGGAGGTTCCGTTGATGGTTGCGCTATTTTCTGGAAACCTGATAATTTTCGGTTGTTGGAGGAAGAGAGTATTGAATTCAAGGGCTATGGACTTGGTGACAACGTTGCGCAACTCTCGGTTTTTGAGACGCAAAAAGCTGAATCAAGAAATGTAGTGATCGGTAACATCCACGTGCTTTATAACCCAACCCGAGGGGAAGCAAAATTAGGCCAGATACGTTTTCTCATATCAAGGGCGAAAATCCTCTCAGAGAGATGGGGTAATGCCCCTGTTGTCCTTTGCGGCGATTTCAATATCACTCCTAAGAGTGCAATATACAAGTTCTTGTCAAAATCTGAGCTGAATATCATGTTATATGACAGAAGAGAGTTATCTGGGCAGAGAGATTGTCATCCTGCTAAAGTTTTGGGTGCCAAACAAGAAATTAGCAGTCCACTTACAATGATAGACGGATTGCTGAAGCACTGCTGGACAGATGAAGAAATTAGAGTTGCAACCGGAGATGCCGATAGCCATTTAGTTGTGCATCCGATGAAGCTTAACAGTTCCTATGCCACGGTGCAGGGTTCTACAAGAACACGGGACCCCAATGGTGAACCTGCAGCTACTACCTACCACTCAAAATTTCTTGGAACCGTTGACTACTTATGGTACTCTGATGGACTTGTGCCCACTAGAGTTATAGACACCGTTCCAGTTGATGTTCTGCAAAAGATTGGTAGCCTCCCTTGCAAGAAAGTGGGAAGCGATCACTTGGCCTTAGTTACGGAGTTCGCCTTCAAACCGGGCACAAACGAAGACAACAAAGAAACTGCTGCATCGTCAAGCAGAACAGCGTTTTCCAAGCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exo_endo_phos

Protein Analysis

456

Amino Acids

50.66

Weight (kDa)

8.16

Isoelectric Point (pI)

47.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exo_endo_phos PF03372 98 - 423 3.9e-22 Endonuclease/Exonuclease/phosphatase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012263)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18500 AT3G18500 AT3G18500 AT3G18500
fragaria_vesca FvH4_5g12590
malus_domestica MD06G1212300.v1.1
prunus_persica Prupe.5G218400_v2.0.a1
pyrus_communis pycom06g18950
rosa_chinensis RchiOBHm_Chr7g0184741
rosa_laevigata RLG00000004954
rosa_multiflora Rmu_co8486587.1_g000001 Rmu_ssc0000289.1_g000017
rosa_roxburghii Rroxscaffold_3G00269380
rosa_rugosa Rorug06G0464900
rosa_samantha Rh7AG078000 Rh7BG069300 Rh7CG070100 Rh7DG069500
rosa_wichuraiana Rw7G005740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 696
AatII GACGTC 1 cut(s) 231
Acc16I TGCGCA 1 cut(s) 624
Acc36I ACCTGC 1 cut(s) 1123
AccB1I GGYRCC 1 cut(s) 926
AccBSI CCGCTC 1 cut(s) 131
AccI GTMKAC 2 cut(s) 164, 447
AciI CCGC 9 cut(s) 4, 30, 57, 75, 126, 129, 221, 410, 798
AclI AACGTT 1 cut(s) 618
AclWI GGATC 4 cut(s) 238, 251, 321, 505
AcoI YGGCCR 1 cut(s) 34
AcsI RAATTY 2 cut(s) 590, 1139
AcuI CTGAAG 1 cut(s) 995
AcvI CACGTG 1 cut(s) 688
AcyI GRCGYC 1 cut(s) 228
AfaI GTAC 5 cut(s) 194, 209, 234, 344, 1169
AfiI CCNNNNNNNGG 1 cut(s) 707
AgsI TTSAA 4 cut(s) 590, 595, 808, 1297
AhdI GACNNNNNGTC 1 cut(s) 183
AhlI ACTAGT 1 cut(s) 179
AluBI AGCT 6 cut(s) 463, 653, 856, 1054, 1121, 1363
AluI AGCT 6 cut(s) 463, 653, 856, 1054, 1121, 1363
Alw21I GWGCWC 1 cut(s) 465
Alw26I GTCTC 3 cut(s) 170, 502, 635
AlwI GGATC 4 cut(s) 238, 251, 321, 505
Ama87I CYCGRG 2 cut(s) 273, 705
AoxI GGCC 3 cut(s) 34, 724, 1272
ApeKI GCWGC 3 cut(s) 120, 1118, 1331
ApoI RAATTY 2 cut(s) 590, 1139
ArsI GACNNNNNNTTYG 2 cut(s) 440, 472
AspLEI GCGC 2 cut(s) 539, 625
AspS9I GGNCC 2 cut(s) 376, 1099
AsuC2I CCSGG 1 cut(s) 1302
AsuHPI GGTGA 2 cut(s) 623, 1121
AsuNHI GCTAGC 1 cut(s) 77
AvaI CYCGRG 2 cut(s) 273, 705
AvaII GGWCC 2 cut(s) 376, 1099
BaeGI GKGCMC 2 cut(s) 1188, 1307
BalI TGGCCA 1 cut(s) 36
BamHI GGATCC 1 cut(s) 243
BanI GGYRCC 1 cut(s) 926
BanII GRGCYC 1 cut(s) 465
BbrPI CACGTG 1 cut(s) 688
BbsI GAAGAC 1 cut(s) 1320
Bbv12I GWGCWC 1 cut(s) 465
BbvI GCAGC 3 cut(s) 107, 1130, 1318
BccI CCATC 4 cut(s) 387, 524, 765, 1169
BcgI CGANNNNNNTGC 2 cut(s) 389, 423
BcnI CCSGG 1 cut(s) 1302
BcoDI GTCTC 3 cut(s) 170, 502, 635
BcuI ACTAGT 1 cut(s) 179
BfaI CTAG 4 cut(s) 78, 180, 476, 1191
BfmI CTRYAG 1 cut(s) 1116
BfuAI ACCTGC 1 cut(s) 1123
BisI GCNGC 5 cut(s) 121, 129, 799, 1119, 1332
BlsI GCNGC 5 cut(s) 122, 130, 800, 1120, 1333
Bme1390I CCNGG 1 cut(s) 1302
Bme18I GGWCC 2 cut(s) 376, 1099
BmeRI GACNNNNNGTC 1 cut(s) 183
BmeT110I CYCGRG 2 cut(s) 273, 705
BmgT120I GGNCC 2 cut(s) 376, 1099
BmiI GGNNCC 8 cut(s) 245, 377, 419, 523, 928, 1100, 1101, 1150
BmrFI CCNGG 1 cut(s) 1302
BmsI GCATC 4 cut(s) 302, 1009, 1051, 1343
BmtI GCTAGC 1 cut(s) 81
BpiI GAAGAC 1 cut(s) 1320
BpmI CTGGAG 1 cut(s) 537
BpuMI CCSGG 1 cut(s) 1302
BsaAI YACGTR 1 cut(s) 688
BsaBI GATNNNNATC 1 cut(s) 906
BsaHI GRCGYC 1 cut(s) 228
BsaJI CCNNGG 3 cut(s) 188, 706, 1071
BsaWI WCCGGW 2 cut(s) 345, 1013
BsaXI ACNNNNNCTCC 4 cut(s) 115, 145, 510, 540
Bsc4I CCNNNNNNNGG 1 cut(s) 707
Bse1I ACTGG 3 cut(s) 172, 520, 1211
Bse8I GATNNNNATC 1 cut(s) 906
BseDI CCNNGG 3 cut(s) 188, 706, 1071
BseGI GGATG 3 cut(s) 681, 907, 1042
BseJI GATNNNNATC 1 cut(s) 906
BseLI CCNNNNNNNGG 1 cut(s) 707
BseMII CTCAG 2 cut(s) 777, 843
BseNI ACTGG 3 cut(s) 172, 520, 1211
BseRI GAGGAG 3 cut(s) 76, 79, 139
BseSI GKGCMC 2 cut(s) 1188, 1307
BseXI GCAGC 3 cut(s) 107, 1130, 1318
BsgI GTGCAG 2 cut(s) 106, 1097
BshFI GGCC 3 cut(s) 36, 726, 1274
BshNI GGYRCC 1 cut(s) 926
BsiHKAI GWGCWC 1 cut(s) 465
BsiHKCI CYCGRG 2 cut(s) 273, 705
BsiSI CCGG 4 cut(s) 224, 346, 1014, 1301
BsiWI CGTACG 1 cut(s) 232
BslFI GGGAC 2 cut(s) 389, 1112
BslI CCNNNNNNNGG 1 cut(s) 707
BsmAI GTCTC 3 cut(s) 170, 502, 635
BsmBI CGTCTC 2 cut(s) 502, 635
BsmFI GGGAC 2 cut(s) 389, 1112
BsnI GGCC 3 cut(s) 36, 726, 1274
BsoBI CYCGRG 2 cut(s) 273, 705
Bsp1286I GDGCHC 3 cut(s) 465, 1188, 1307
Bsp143I GATC 5 cut(s) 243, 313, 497, 672, 1264
BspACI CCGC 9 cut(s) 4, 30, 57, 75, 126, 129, 221, 410, 798
BspANI GGCC 3 cut(s) 36, 726, 1274
BspCNI CTCAG 2 cut(s) 776, 844
BspLI GGNNCC 8 cut(s) 245, 377, 419, 523, 928, 1100, 1101, 1150
BspMAI CTGCAG 1 cut(s) 1120
BspMI ACCTGC 1 cut(s) 1123
BspOI GCTAGC 1 cut(s) 81
BspPI GGATC 4 cut(s) 238, 251, 321, 505
BspT107I GGYRCC 1 cut(s) 926
BsrBI CCGCTC 1 cut(s) 131
BsrI ACTGG 3 cut(s) 172, 520, 1211
BssECI CCNNGG 3 cut(s) 188, 706, 1071
BssMI GATC 5 cut(s) 243, 313, 497, 672, 1264
BssNI GRCGYC 1 cut(s) 228
Bst4CI ACNGT 7 cut(s) 112, 207, 212, 1061, 1075, 1153, 1207
Bst6I CTCTTC 2 cut(s) 573, 874
BstACI GRCGYC 1 cut(s) 228
BstAPI GCANNNNNTGC 1 cut(s) 65
BstBAI YACGTR 1 cut(s) 688
BstC8I GCNNGC 1 cut(s) 79
BstDEI CTNAG 4 cut(s) 763, 819, 852, 1276
BstDSI CCRYGG 2 cut(s) 188, 1071
BstF5I GGATG 3 cut(s) 681, 907, 1042
BstHHI GCGC 2 cut(s) 539, 625
BstKTI GATC 5 cut(s) 246, 316, 500, 675, 1267
BstMAI GTCTC 3 cut(s) 170, 502, 635
BstMBI GATC 5 cut(s) 243, 313, 497, 672, 1264
BstMWI GCNNNNNNNGC 4 cut(s) 56, 65, 74, 1245
BstSCI CCNGG 1 cut(s) 1300
BstSFI CTRYAG 1 cut(s) 1116
BstSLI GKGCMC 2 cut(s) 1188, 1307
BstV1I GCAGC 3 cut(s) 107, 1130, 1318
BstV2I GAAGAC 1 cut(s) 1320
BstX2I RGATCY 1 cut(s) 243
BstYI RGATCY 1 cut(s) 243
BsuRI GGCC 3 cut(s) 36, 726, 1274
BtgI CCRYGG 2 cut(s) 188, 1071
BtgZI GCGATG 1 cut(s) 414
BtsCI GGATG 3 cut(s) 681, 907, 1042
BtsI GCAGTG 1 cut(s) 979
BtsIMutI CAGTG 2 cut(s) 513, 979
BveI ACCTGC 1 cut(s) 1123
Cac8I GCNNGC 1 cut(s) 79
CfoI GCGC 2 cut(s) 539, 625
Cfr13I GGNCC 2 cut(s) 376, 1099
CseI GACGC 3 cut(s) 20, 519, 652
Csp6I GTAC 5 cut(s) 193, 208, 233, 343, 1168
CviAII CATG 2 cut(s) 215, 865
CviQI GTAC 5 cut(s) 193, 208, 233, 343, 1168
DdeI CTNAG 4 cut(s) 763, 819, 852, 1276
DpnI GATC 5 cut(s) 245, 315, 499, 674, 1266
DpnII GATC 5 cut(s) 243, 313, 497, 672, 1264
DriI GACNNNNNGTC 1 cut(s) 183
EaeI YGGCCR 1 cut(s) 34
Eam1104I CTCTTC 2 cut(s) 573, 874
Eam1105I GACNNNNNGTC 1 cut(s) 183
EarI CTCTTC 2 cut(s) 573, 874
EciI GGCGGA 1 cut(s) 210
Ecl136II GAGCTC 1 cut(s) 463
Eco24I GRGCYC 1 cut(s) 465
Eco47I GGWCC 2 cut(s) 376, 1099
Eco53kI GAGCTC 1 cut(s) 463
Eco57I CTGAAG 1 cut(s) 995
Eco72I CACGTG 1 cut(s) 688
Eco88I CYCGRG 2 cut(s) 273, 705
EcoICRI GAGCTC 1 cut(s) 463
EcoO109I RGGNCCY 1 cut(s) 1099
EcoRI GAATTC 1 cut(s) 590
EcoT38I GRGCYC 1 cut(s) 465
Esp3I CGTCTC 2 cut(s) 502, 635
FaeI CATG 2 cut(s) 218, 868
FaqI GGGAC 2 cut(s) 389, 1112
FatI CATG 2 cut(s) 214, 864
FauNDI CATATG 1 cut(s) 395
FblI GTMKAC 2 cut(s) 164, 447
Fnu4HI GCNGC 5 cut(s) 121, 129, 799, 1119, 1332
FokI GGATG 3 cut(s) 668, 894, 1029
FriOI GRGCYC 1 cut(s) 465
Fsp4HI GCNGC 5 cut(s) 121, 129, 799, 1119, 1332
FspBI CTAG 4 cut(s) 78, 180, 476, 1191
FspI TGCGCA 1 cut(s) 624
GlaI GCGC 2 cut(s) 538, 624
GluI GCNGC 5 cut(s) 121, 129, 799, 1119, 1332
GsuI CTGGAG 1 cut(s) 537
HaeIII GGCC 3 cut(s) 36, 726, 1274
HapII CCGG 4 cut(s) 224, 346, 1014, 1301
HgaI GACGC 3 cut(s) 20, 519, 652
HhaI GCGC 2 cut(s) 539, 625
Hin1I GRCGYC 1 cut(s) 228
Hin1II CATG 2 cut(s) 218, 868
Hin6I GCGC 2 cut(s) 537, 623
HinP1I GCGC 2 cut(s) 537, 623
HincII GTYRAC 1 cut(s) 1156
HindII GTYRAC 1 cut(s) 1156
HindIII AAGCTT 2 cut(s) 1052, 1361
HinfI GANTC 2 cut(s) 472, 656
HpaII CCGG 4 cut(s) 224, 346, 1014, 1301
HphI GGTGA 2 cut(s) 623, 1121
Hpy166II GTNNAC 5 cut(s) 165, 448, 950, 1112, 1156
Hpy188I TCNGA 6 cut(s) 469, 497, 766, 853, 1047, 1174
Hpy188III TCNNGA 4 cut(s) 273, 275, 547, 660
Hpy8I GTNNAC 5 cut(s) 165, 448, 950, 1112, 1156
Hpy99I CGWCG 4 cut(s) 14, 50, 163, 233
HpyAV CCTTC 2 cut(s) 366, 1303
HpyCH4III ACNGT 7 cut(s) 112, 207, 212, 1061, 1075, 1153, 1207
HpyCH4IV ACGT 5 cut(s) 39, 228, 618, 687, 733
HpyF10VI GCNNNNNNNGC 4 cut(s) 56, 65, 74, 1245
HpyF3I CTNAG 4 cut(s) 763, 819, 852, 1276
HpySE526I ACGT 5 cut(s) 39, 228, 618, 687, 733
Hsp92I GRCGYC 1 cut(s) 228
Hsp92II CATG 2 cut(s) 218, 868
HspAI GCGC 2 cut(s) 537, 623
KflI GGGWCCC 1 cut(s) 1099
Kzo9I GATC 5 cut(s) 243, 313, 497, 672, 1264
LmnI GCTCC 2 cut(s) 136, 223
Lsp1109I GCAGC 3 cut(s) 107, 1130, 1318
LweI GCATC 4 cut(s) 302, 1009, 1051, 1343
MaeI CTAG 4 cut(s) 78, 180, 476, 1191
MaeII ACGT 5 cut(s) 39, 228, 618, 687, 733
MaeIII GTNAC 4 cut(s) 170, 611, 677, 1279
MalI GATC 5 cut(s) 245, 315, 499, 674, 1266
MbiI CCGCTC 1 cut(s) 131
MboI GATC 5 cut(s) 243, 313, 497, 672, 1264
MboII GAAGA 4 cut(s) 590, 891, 1007, 1325
MflI RGATCY 1 cut(s) 243
MhlI GDGCHC 3 cut(s) 465, 1188, 1307
MlsI TGGCCA 1 cut(s) 36
MluCI AATT 6 cut(s) 559, 590, 719, 939, 999, 1139
MluNI TGGCCA 1 cut(s) 36
MmeI TCCRAC 2 cut(s) 475, 552
Mox20I TGGCCA 1 cut(s) 36
MscI TGGCCA 1 cut(s) 36
MseI TTAA 1 cut(s) 1056
MslI CAYNNNNRTG 1 cut(s) 686
Msp20I TGGCCA 1 cut(s) 36
MspI CCGG 4 cut(s) 224, 346, 1014, 1301
MspR9I CCNGG 1 cut(s) 1302
MwoI GCNNNNNNNGC 4 cut(s) 56, 65, 74, 1245
NciI CCSGG 1 cut(s) 1302
NdeI CATATG 1 cut(s) 395
NdeII GATC 5 cut(s) 243, 313, 497, 672, 1264
NheI GCTAGC 1 cut(s) 77
NlaIII CATG 2 cut(s) 218, 868
NlaIV GGNNCC 8 cut(s) 245, 377, 419, 523, 928, 1100, 1101, 1150
NmuCI GTSAC 1 cut(s) 611
NsbI TGCGCA 1 cut(s) 624
PaeR7I CTCGAG 1 cut(s) 273
PfeI GAWTC 2 cut(s) 472, 656
Pfl23II CGTACG 1 cut(s) 232
PkrI GCNGC 5 cut(s) 122, 130, 800, 1120, 1333
PmaCI CACGTG 1 cut(s) 688
PmlI CACGTG 1 cut(s) 688
Ppu21I YACGTR 1 cut(s) 688
PpuMI RGGWCCY 1 cut(s) 1099
PsiI TTATAA 1 cut(s) 696
Psp124BI GAGCTC 1 cut(s) 465
Psp1406I AACGTT 1 cut(s) 618
Psp5II RGGWCCY 1 cut(s) 1099
PspCI CACGTG 1 cut(s) 688
PspLI CGTACG 1 cut(s) 232
PspN4I GGNNCC 8 cut(s) 245, 377, 419, 523, 928, 1100, 1101, 1150
PspPI GGNCC 2 cut(s) 376, 1099
PspPPI RGGWCCY 1 cut(s) 1099
PstI CTGCAG 1 cut(s) 1120
PsuI RGATCY 1 cut(s) 243
RsaI GTAC 5 cut(s) 194, 209, 234, 344, 1169
RsaNI GTAC 5 cut(s) 193, 208, 233, 343, 1168
RseI CAYNNNNRTG 1 cut(s) 686
SacI GAGCTC 1 cut(s) 465
SaqAI TTAA 1 cut(s) 1056
SatI GCNGC 5 cut(s) 121, 129, 799, 1119, 1332
Sau3AI GATC 5 cut(s) 243, 313, 497, 672, 1264
Sau96I GGNCC 2 cut(s) 376, 1099
ScrFI CCNGG 1 cut(s) 1302
SduI GDGCHC 3 cut(s) 465, 1188, 1307
SfaNI GCATC 4 cut(s) 302, 1009, 1051, 1343
SfcI CTRYAG 1 cut(s) 1116
Sfr274I CTCGAG 1 cut(s) 273
SinI GGWCC 2 cut(s) 376, 1099
SlaI CTCGAG 1 cut(s) 273
SmiMI CAYNNNNRTG 1 cut(s) 686
SmlI CTYRAG 1 cut(s) 273
SmoI CTYRAG 1 cut(s) 273
SpeI ACTAGT 1 cut(s) 179
Sse9I AATT 6 cut(s) 559, 590, 719, 939, 999, 1139
SsiI CCGC 9 cut(s) 4, 30, 57, 75, 126, 129, 221, 410, 798
SspMI CTAG 4 cut(s) 78, 180, 476, 1191
SstI GAGCTC 1 cut(s) 465
StyD4I CCNGG 1 cut(s) 1300
TaaI ACNGT 7 cut(s) 112, 207, 212, 1061, 1075, 1153, 1207
TaiI ACGT 5 cut(s) 42, 231, 621, 690, 736
TaqI TCGA 2 cut(s) 274, 316
TasI AATT 6 cut(s) 559, 590, 719, 939, 999, 1139
TatI WGTACW 1 cut(s) 207
TauI GCSGC 2 cut(s) 131, 801
TfiI GAWTC 2 cut(s) 472, 656
Tru1I TTAA 1 cut(s) 1056
Tru9I TTAA 1 cut(s) 1056
TscAI CASTG 2 cut(s) 520, 986
TseFI GTSAC 1 cut(s) 611
TseI GCWGC 3 cut(s) 120, 1118, 1331
Tsp45I GTSAC 1 cut(s) 611
TspDTI ATGAA 3 cut(s) 417, 1008, 1064
TspGWI ACGGA 5 cut(s) 34, 177, 514, 981, 1298
TspRI CASTG 2 cut(s) 520, 986
VpaK11BI GGWCC 2 cut(s) 376, 1099
XapI RAATTY 2 cut(s) 590, 1139
XhoI CTCGAG 1 cut(s) 273
XmiI GTMKAC 2 cut(s) 164, 447
XspI CTAG 4 cut(s) 78, 180, 476, 1191
ZraI GACGTC 1 cut(s) 229
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.