Rmu_co8486587.1_g000001

Carbon catabolite repressor protein 4 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8486587.1
OG0012263
Physical Location & Seq
Forward (+)
1 .. 2153
2153 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8486587.1_g000001.1.cds

Sequence Viewer

Length: 730 bp
gcagatgcataaagacaaatcaagaaagttagtgattggtaacatccatgtgctttaccggccaagccgaggagaagttaaattgggtcagattcgttttctcatatcaagggcgcagaccctctcggagaaatggggtaatgcccctgttgtcctttgtggtgatttcaattgcactcctcagagtgcaatatacaagttcttgtcaacatctgagctaaatatcatgtcatatgacagaacagagttatctgggcagaggagctgtcatcctgctcaagtcttaggtgtcaaacaacgaatgagcagtccattgagcttgatagatggattgttgaaacataactggacagatgaagaggttagagttgcaactggtaattctggcagccattcagttgtgcatcctttaaagcttaacagtgcttatgctacggttcagggttctacagcaacacggggatccagtggtgagcctttagctacttcctaccactcaaagtttcttggaaccgttgactacttatggtactcggatggtcttgtgccgacaggagttatggatacagttccacttgacactctccagaggattggtagcctcccttgcaagaaagtgggcagcgatcacctggctttagtttctgagtttgccttcacaccaggcacgaaggaaggcaacaacacaactgcatccacaactgaaaattctttaccagcattgtcctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exo_endo_phos

Protein Analysis

242

Amino Acids

26.28

Weight (kDa)

8.86

Isoelectric Point (pI)

43.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012263)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18500 AT3G18500 AT3G18500 AT3G18500
fragaria_vesca FvH4_5g12590
malus_domestica MD06G1212300.v1.1
prunus_persica Prupe.5G218400_v2.0.a1
pyrus_communis pycom06g18950
rosa_chinensis RchiOBHm_Chr7g0184741
rosa_laevigata RLG00000004954
rosa_multiflora Rmu_co8486587.1_g000001 Rmu_ssc0000289.1_g000017
rosa_roxburghii Rroxscaffold_3G00269380
rosa_rugosa Rorug06G0464900
rosa_samantha Rh7AG078000 Rh7BG069300 Rh7CG070100 Rh7DG069500
rosa_wichuraiana Rw7G005740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 457, 470
AcoI YGGCCR 1 cut(s) 60
AcsI RAATTY 1 cut(s) 707
AfaI GTAC 1 cut(s) 531
AfiI CCNNNNNNNGG 1 cut(s) 69
AgsI TTSAA 2 cut(s) 170, 338
AjnI CCWGG 2 cut(s) 631, 662
AluBI AGCT 5 cut(s) 218, 265, 319, 416, 483
AluI AGCT 5 cut(s) 218, 265, 319, 416, 483
AlwI GGATC 2 cut(s) 457, 470
AoxI GGCC 1 cut(s) 60
ApeKI GCWGC 2 cut(s) 388, 622
ApoI RAATTY 1 cut(s) 707
ArsI GACNNNNNNTTYG 2 cut(s) 293, 325
AspLEI GCGC 1 cut(s) 116
AsuHPI GGTGA 3 cut(s) 174, 483, 621
BamHI GGATCC 1 cut(s) 462
BbvI GCAGC 2 cut(s) 400, 634
BccI CCATC 2 cut(s) 321, 531
BciT130I CCWGG 2 cut(s) 633, 664
BciVI GTATCC 1 cut(s) 557
BfaI CTAG 1 cut(s) 728
BfmI CTRYAG 1 cut(s) 448
BfuI GTATCC 1 cut(s) 557
BisI GCNGC 2 cut(s) 389, 623
BlsI GCNGC 2 cut(s) 390, 624
Bme1390I CCNGG 2 cut(s) 633, 664
BmiI GGNNCC 2 cut(s) 464, 512
BmrFI CCNGG 2 cut(s) 633, 664
BmsI GCATC 2 cut(s) 413, 702
BpmI CTGGAG 1 cut(s) 570
BpuEI CTTGAG 1 cut(s) 262
BsaJI CCNNGG 1 cut(s) 68
Bsc4I CCNNNNNNNGG 1 cut(s) 69
Bse118I RCCGGY 1 cut(s) 58
Bse1I ACTGG 3 cut(s) 351, 380, 466
BseBI CCWGG 2 cut(s) 633, 664
BseDI CCNNGG 1 cut(s) 68
BseGI GGATG 5 cut(s) 43, 269, 404, 542, 693
BseLI CCNNNNNNNGG 1 cut(s) 69
BseMII CTCAG 3 cut(s) 195, 205, 637
BseNI ACTGG 3 cut(s) 351, 380, 466
BseRI GAGGAG 3 cut(s) 85, 169, 275
BseXI GCAGC 2 cut(s) 400, 634
BshFI GGCC 1 cut(s) 62
BsiSI CCGG 1 cut(s) 59
BslI CCNNNNNNNGG 1 cut(s) 69
BsnI GGCC 1 cut(s) 62
Bsp143I GATC 2 cut(s) 462, 626
BspANI GGCC 1 cut(s) 62
BspCNI CTCAG 3 cut(s) 194, 206, 638
BspLI GGNNCC 2 cut(s) 464, 512
BspPI GGATC 2 cut(s) 457, 470
BsrFI RCCGGY 1 cut(s) 58
BsrI ACTGG 3 cut(s) 351, 380, 466
BssAI RCCGGY 1 cut(s) 58
BssECI CCNNGG 1 cut(s) 68
BssMI GATC 2 cut(s) 462, 626
Bst2UI CCWGG 2 cut(s) 633, 664
Bst4CI ACNGT 4 cut(s) 423, 437, 515, 569
Bst6I CTCTTC 1 cut(s) 352
BstDEI CTNAG 4 cut(s) 181, 214, 284, 646
BstF5I GGATG 5 cut(s) 43, 269, 404, 542, 693
BstHHI GCGC 1 cut(s) 116
BstKTI GATC 2 cut(s) 465, 629
BstMBI GATC 2 cut(s) 462, 626
BstMWI GCNNNNNNNGC 2 cut(s) 59, 607
BstNI CCWGG 2 cut(s) 633, 664
BstSCI CCNGG 2 cut(s) 631, 662
BstSFI CTRYAG 1 cut(s) 448
BstV1I GCAGC 2 cut(s) 400, 634
BstX2I RGATCY 1 cut(s) 462
BstXI CCANNNNNNTGG 1 cut(s) 594
BstYI RGATCY 1 cut(s) 462
BsuI GTATCC 1 cut(s) 557
BsuRI GGCC 1 cut(s) 62
BtsCI GGATG 5 cut(s) 43, 269, 404, 542, 693
BtsIMutI CAGTG 2 cut(s) 428, 473
CfoI GCGC 1 cut(s) 116
Cfr10I RCCGGY 1 cut(s) 58
Csp6I GTAC 1 cut(s) 530
CviAII CATG 2 cut(s) 48, 227
CviQI GTAC 1 cut(s) 530
DdeI CTNAG 4 cut(s) 181, 214, 284, 646
DpnI GATC 2 cut(s) 464, 628
DpnII GATC 2 cut(s) 462, 626
DraI TTTAAA 1 cut(s) 412
EaeI YGGCCR 1 cut(s) 60
Eam1104I CTCTTC 1 cut(s) 352
EarI CTCTTC 1 cut(s) 352
EcoRII CCWGG 2 cut(s) 631, 662
EcoT22I ATGCAT 1 cut(s) 10
FaeI CATG 2 cut(s) 51, 230
FatI CATG 2 cut(s) 47, 226
FauNDI CATATG 1 cut(s) 233
Fnu4HI GCNGC 2 cut(s) 389, 623
FokI GGATG 5 cut(s) 30, 256, 391, 549, 680
Fsp4HI GCNGC 2 cut(s) 389, 623
FspBI CTAG 1 cut(s) 728
GlaI GCGC 1 cut(s) 115
GluI GCNGC 2 cut(s) 389, 623
GsuI CTGGAG 1 cut(s) 570
HaeIII GGCC 1 cut(s) 62
HapII CCGG 1 cut(s) 59
HhaI GCGC 1 cut(s) 116
Hin1II CATG 2 cut(s) 51, 230
Hin6I GCGC 1 cut(s) 114
HinP1I GCGC 1 cut(s) 114
HincII GTYRAC 2 cut(s) 208, 518
HindII GTYRAC 2 cut(s) 208, 518
HindIII AAGCTT 1 cut(s) 414
HinfI GANTC 1 cut(s) 92
HpaII CCGG 1 cut(s) 59
HphI GGTGA 3 cut(s) 174, 483, 621
Hpy166II GTNNAC 2 cut(s) 208, 518
Hpy188I TCNGA 6 cut(s) 91, 128, 184, 215, 536, 647
Hpy188III TCNNGA 2 cut(s) 22, 587
Hpy8I GTNNAC 2 cut(s) 208, 518
HpyAV CCTTC 3 cut(s) 665, 665, 669
HpyCH4III ACNGT 4 cut(s) 423, 437, 515, 569
HpyCH4V TGCA 7 cut(s) 8, 175, 189, 372, 404, 610, 693
HpyF10VI GCNNNNNNNGC 2 cut(s) 59, 607
HpyF3I CTNAG 4 cut(s) 181, 214, 284, 646
Hsp92II CATG 2 cut(s) 51, 230
HspAI GCGC 1 cut(s) 114
Kzo9I GATC 2 cut(s) 462, 626
LmnI GCTCC 1 cut(s) 262
Lsp1109I GCAGC 2 cut(s) 400, 634
LweI GCATC 2 cut(s) 413, 702
MaeI CTAG 1 cut(s) 728
MaeIII GTNAC 1 cut(s) 39
MalI GATC 2 cut(s) 464, 628
MboI GATC 2 cut(s) 462, 626
MboII GAAGA 1 cut(s) 369
MfeI CAATTG 1 cut(s) 170
MflI RGATCY 1 cut(s) 462
MluCI AATT 4 cut(s) 81, 170, 380, 707
MnlI CCTC 7 cut(s) 63, 132, 190, 253, 353, 583, 612
Mph1103I ATGCAT 1 cut(s) 10
MseI TTAA 3 cut(s) 79, 411, 418
MslI CAYNNNNRTG 1 cut(s) 48
MspI CCGG 1 cut(s) 59
MspR9I CCNGG 2 cut(s) 633, 664
MunI CAATTG 1 cut(s) 170
MvaI CCWGG 2 cut(s) 633, 664
MwoI GCNNNNNNNGC 2 cut(s) 59, 607
NdeI CATATG 1 cut(s) 233
NdeII GATC 2 cut(s) 462, 626
NlaIII CATG 2 cut(s) 51, 230
NlaIV GGNNCC 2 cut(s) 464, 512
NmeAIII GCCGAG 1 cut(s) 93
NsiI ATGCAT 1 cut(s) 10
PfeI GAWTC 1 cut(s) 92
PkrI GCNGC 2 cut(s) 390, 624
Psp6I CCWGG 2 cut(s) 631, 662
PspGI CCWGG 2 cut(s) 631, 662
PspN4I GGNNCC 2 cut(s) 464, 512
PsuI RGATCY 1 cut(s) 462
RsaI GTAC 1 cut(s) 531
RsaNI GTAC 1 cut(s) 530
RseI CAYNNNNRTG 1 cut(s) 48
SaqAI TTAA 3 cut(s) 79, 411, 418
SatI GCNGC 2 cut(s) 389, 623
Sau3AI GATC 2 cut(s) 462, 626
ScrFI CCNGG 2 cut(s) 633, 664
SetI ASST 8 cut(s) 220, 267, 290, 321, 364, 418, 485, 634
SfaNI GCATC 2 cut(s) 413, 702
SfcI CTRYAG 1 cut(s) 448
SmiMI CAYNNNNRTG 1 cut(s) 48
SmlI CTYRAG 1 cut(s) 277
SmoI CTYRAG 1 cut(s) 277
Sse9I AATT 4 cut(s) 81, 170, 380, 707
SspMI CTAG 1 cut(s) 728
StyD4I CCNGG 2 cut(s) 631, 662
TaaI ACNGT 4 cut(s) 423, 437, 515, 569
TasI AATT 4 cut(s) 81, 170, 380, 707
TfiI GAWTC 1 cut(s) 92
Tru1I TTAA 3 cut(s) 79, 411, 418
Tru9I TTAA 3 cut(s) 79, 411, 418
TscAI CASTG 2 cut(s) 428, 473
TseI GCWGC 2 cut(s) 388, 622
TspDTI ATGAA 1 cut(s) 370
TspRI CASTG 2 cut(s) 428, 473
XapI RAATTY 1 cut(s) 707
XspI CTAG 1 cut(s) 728
Zsp2I ATGCAT 1 cut(s) 10
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.