Rh7AG078000

Carbon catabolite repressor protein 4 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0012263
Physical Location & Seq
Forward (+)
5570295 .. 5574129
3835 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG078000.1

Sequence Viewer

Length: 1029 bp
ATGCGCTGCGACGCTGCTTCCTCTTGGCTCTGCGGCCGCCACGTCACCGTCTCAACCGCCATGCCGAACGCCGGAACCTCCTCCTTCTTCCTCTGCAGACCCACCGTCTCCTGCTGCACCAACACTCCCAACCCACTCAAGCGGCGATACTCCAGTAGTAGTCATGCTCCGGACGTTGTCCGCCGTTGGATTCAATCCGATCATCCGCTAGCTTCTCAGGATAGGTTCACGGTTGCTTCGTACAATATTTTGGGAGATAGAAATGCTTTTCGGCATAGAGACCTGTACGGGAATGTGCCTTCTATGTATCTGAAATGGGACCGCCGGAAAAGGGTCATCTGCGATGAACTTGCGGCCTGGAATTCTGATATAGTTTGCTTGCAAGAGGTAGACAAGTATTTGGAGCTCGCTGATATTTTGGCAAAACTGGGATATGCTGGTTCTTATAAGAGACGCACAGGAGATACCGTTGATGGTTGCGCTACTTTCTGGAAATCTCATAATTTTCGGTTGTTAGAGGAAGAGAGCATTGAATTCAAGGGATACGGACTTCGTGACAATGTTGCTCAACTCTCGGTTTTTGAGATGCATAAAGACAAATCAAGAAAGTTAGTGATTGGTAACATCCATGTGCTTTACCGGCCAAGCCGAGGAGAAGTTAAATTGGGTCAGATTCGTTTTCTCATATCAAGGGCGCAGACCCTCTCGGAGAAATGGGGTAATGCCCCTGTTGTCCTTTGTGGTGATTTCAATTGCACTCCTCAGAGTGCAATATACAAGTTCTTGTCAACATCTGAGCTAAATATCATGTCATATGACAGAACAGAGTTATCTGGGCAGAGGAGCTGTCATCCTGCTCAAGTCTTAGGTGTCAAACAACGAATGAGCAGTCCATTGAGCTTGATAGATGGATTGTTGAAACATAACTGGACAGATGAAGAGGTTAGAGTTGCAACTGGTAATTCTGGCAGCCATTCAGTTGTGCATCCCTTGAAGCTTAACAGTGCTTATGCTGCGGTTCAGGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exo_endo_phos

Protein Analysis

342

Amino Acids

38.53

Weight (kDa)

9.15

Isoelectric Point (pI)

58.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exo_endo_phos PF03372 79 - 269 1.2e-15 Endonuclease/Exonuclease/phosphatase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012263)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18500 AT3G18500 AT3G18500 AT3G18500
fragaria_vesca FvH4_5g12590
malus_domestica MD06G1212300.v1.1
prunus_persica Prupe.5G218400_v2.0.a1
pyrus_communis pycom06g18950
rosa_chinensis RchiOBHm_Chr7g0184741
rosa_laevigata RLG00000004954
rosa_multiflora Rmu_co8486587.1_g000001 Rmu_ssc0000289.1_g000017
rosa_roxburghii Rroxscaffold_3G00269380
rosa_rugosa Rorug06G0464900
rosa_samantha Rh7AG078000 Rh7BG069300 Rh7CG070100 Rh7DG069500
rosa_wichuraiana Rw7G005740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 447
AccI GTMKAC 1 cut(s) 390
AccIII TCCGGA 1 cut(s) 169
AciI CCGC 9 cut(s) 33, 37, 57, 142, 181, 206, 322, 353, 1016
AcoI YGGCCR 2 cut(s) 34, 641
AcsI RAATTY 2 cut(s) 361, 533
AfaI GTAC 2 cut(s) 242, 287
AfiI CCNNNNNNNGG 3 cut(s) 71, 331, 650
AgsI TTSAA 6 cut(s) 194, 533, 538, 751, 919, 994
AhdI GACNNNNNGTC 1 cut(s) 104
AjiI CACGTC 1 cut(s) 43
AjnI CCWGG 1 cut(s) 356
AluBI AGCT 6 cut(s) 212, 406, 799, 846, 900, 997
AluI AGCT 6 cut(s) 212, 406, 799, 846, 900, 997
Alw21I GWGCWC 1 cut(s) 408
Alw26I GTCTC 4 cut(s) 55, 112, 273, 445
Aor13HI TCCGGA 1 cut(s) 169
AoxI GGCC 3 cut(s) 34, 354, 641
ApeKI GCWGC 5 cut(s) 6, 14, 114, 969, 1013
ApoI RAATTY 2 cut(s) 361, 533
ArsI GACNNNNNNTTYG 2 cut(s) 874, 906
AspLEI GCGC 3 cut(s) 6, 482, 697
AspS9I GGNCC 1 cut(s) 319
AsuHPI GGTGA 2 cut(s) 37, 755
AsuNHI GCTAGC 1 cut(s) 208
AvaII GGWCC 1 cut(s) 319
BaeI ACNNNNGTAYC 2 cut(s) 139, 172
BanII GRGCYC 1 cut(s) 408
Bbv12I GWGCWC 1 cut(s) 408
BbvI GCAGC 3 cut(s) 101, 981, 1000
BccI CCATC 2 cut(s) 467, 902
BceAI ACGGC 1 cut(s) 168
BcgI CGANNNNNNTGC 2 cut(s) 332, 366
BciT130I CCWGG 1 cut(s) 358
BciVI GTATCC 1 cut(s) 536
BcoDI GTCTC 4 cut(s) 55, 112, 273, 445
BfaI CTAG 1 cut(s) 209
BfmI CTRYAG 1 cut(s) 94
BfuI GTATCC 1 cut(s) 536
BisI GCNGC 9 cut(s) 7, 15, 34, 37, 115, 143, 354, 970, 1014
BlsI GCNGC 9 cut(s) 8, 16, 35, 38, 116, 144, 355, 971, 1015
Bme1390I CCNGG 1 cut(s) 358
Bme18I GGWCC 1 cut(s) 319
BmeRI GACNNNNNGTC 1 cut(s) 104
BmgBI CACGTC 1 cut(s) 43
BmgT120I GGNCC 1 cut(s) 319
BmiI GGNNCC 2 cut(s) 76, 320
BmrFI CCNGG 1 cut(s) 358
BmrI ACTGGG 1 cut(s) 437
BmsI GCATC 2 cut(s) 576, 994
BmtI GCTAGC 1 cut(s) 212
BmuI ACTGGG 1 cut(s) 437
BpmI CTGGAG 1 cut(s) 136
BpuEI CTTGAG 2 cut(s) 122, 843
BsaI GGTCTC 1 cut(s) 273
BsaJI CCNNGG 1 cut(s) 649
BsaWI WCCGGW 1 cut(s) 169
BsaXI ACNNNNNCTCC 4 cut(s) 109, 139, 453, 483
Bsc4I CCNNNNNNNGG 3 cut(s) 71, 331, 650
Bse118I RCCGGY 1 cut(s) 639
Bse1I ACTGG 4 cut(s) 153, 432, 932, 961
BseAI TCCGGA 1 cut(s) 169
BseBI CCWGG 1 cut(s) 358
BseDI CCNNGG 1 cut(s) 649
BseGI GGATG 4 cut(s) 202, 624, 850, 985
BseLI CCNNNNNNNGG 3 cut(s) 71, 331, 650
BseMII CTCAG 3 cut(s) 230, 776, 786
BseNI ACTGG 4 cut(s) 153, 432, 932, 961
BseRI GAGGAG 4 cut(s) 70, 666, 750, 856
BseX3I CGGCCG 1 cut(s) 34
BseXI GCAGC 3 cut(s) 101, 981, 1000
BsgI GTGCAG 1 cut(s) 100
Bsh1285I CGRYCG 1 cut(s) 37
BshFI GGCC 3 cut(s) 36, 356, 643
BsiEI CGRYCG 1 cut(s) 37
BsiHKAI GWGCWC 1 cut(s) 408
BsiSI CCGG 4 cut(s) 72, 170, 325, 640
BslFI GGGAC 1 cut(s) 332
BslI CCNNNNNNNGG 3 cut(s) 71, 331, 650
BsmAI GTCTC 4 cut(s) 55, 112, 273, 445
BsmBI CGTCTC 3 cut(s) 55, 112, 445
BsmFI GGGAC 1 cut(s) 332
BsnI GGCC 3 cut(s) 36, 356, 643
Bso31I GGTCTC 1 cut(s) 273
Bsp1286I GDGCHC 1 cut(s) 408
Bsp13I TCCGGA 1 cut(s) 169
Bsp143I GATC 1 cut(s) 199
BspACI CCGC 9 cut(s) 33, 37, 57, 142, 181, 206, 322, 353, 1016
BspANI GGCC 3 cut(s) 36, 356, 643
BspCNI CTCAG 3 cut(s) 229, 775, 787
BspEI TCCGGA 1 cut(s) 169
BspLI GGNNCC 2 cut(s) 76, 320
BspMAI CTGCAG 1 cut(s) 98
BspOI GCTAGC 1 cut(s) 212
BspTNI GGTCTC 1 cut(s) 273
BsrFI RCCGGY 1 cut(s) 639
BsrI ACTGG 4 cut(s) 153, 432, 932, 961
BssAI RCCGGY 1 cut(s) 639
BssECI CCNNGG 1 cut(s) 649
BssMI GATC 1 cut(s) 199
Bst2UI CCWGG 1 cut(s) 358
Bst4CI ACNGT 5 cut(s) 49, 106, 232, 469, 1004
Bst6I CTCTTC 2 cut(s) 516, 933
BstC8I GCNNGC 3 cut(s) 210, 380, 408
BstDEI CTNAG 4 cut(s) 216, 762, 795, 865
BstF5I GGATG 4 cut(s) 202, 624, 850, 985
BstHHI GCGC 3 cut(s) 6, 482, 697
BstKTI GATC 1 cut(s) 202
BstMAI GTCTC 4 cut(s) 55, 112, 273, 445
BstMBI GATC 1 cut(s) 199
BstMCI CGRYCG 1 cut(s) 37
BstMWI GCNNNNNNNGC 2 cut(s) 640, 1013
BstNI CCWGG 1 cut(s) 358
BstSCI CCNGG 1 cut(s) 356
BstSFI CTRYAG 1 cut(s) 94
BstV1I GCAGC 3 cut(s) 101, 981, 1000
BstZI CGGCCG 1 cut(s) 34
BsuI GTATCC 1 cut(s) 536
BsuRI GGCC 3 cut(s) 36, 356, 643
BtgZI GCGATG 1 cut(s) 357
BtrI CACGTC 1 cut(s) 43
BtsCI GGATG 4 cut(s) 202, 624, 850, 985
BtsIMutI CAGTG 1 cut(s) 1009
Cac8I GCNNGC 3 cut(s) 210, 380, 408
CciNI GCGGCCGC 1 cut(s) 34
CfoI GCGC 3 cut(s) 6, 482, 697
Cfr10I RCCGGY 1 cut(s) 639
Cfr13I GGNCC 1 cut(s) 319
CseI GACGC 2 cut(s) 20, 462
Csp6I GTAC 2 cut(s) 241, 286
CviAII CATG 4 cut(s) 61, 164, 629, 808
CviQI GTAC 2 cut(s) 241, 286
DdeI CTNAG 4 cut(s) 216, 762, 795, 865
DpnI GATC 1 cut(s) 201
DpnII GATC 1 cut(s) 199
DriI GACNNNNNGTC 1 cut(s) 104
EaeI YGGCCR 2 cut(s) 34, 641
EagI CGGCCG 1 cut(s) 34
Eam1104I CTCTTC 2 cut(s) 516, 933
Eam1105I GACNNNNNGTC 1 cut(s) 104
EarI CTCTTC 2 cut(s) 516, 933
EciI GGCGGA 1 cut(s) 170
Ecl136II GAGCTC 1 cut(s) 406
EclXI CGGCCG 1 cut(s) 34
Eco24I GRGCYC 1 cut(s) 408
Eco31I GGTCTC 1 cut(s) 273
Eco47I GGWCC 1 cut(s) 319
Eco52I CGGCCG 1 cut(s) 34
Eco53kI GAGCTC 1 cut(s) 406
EcoICRI GAGCTC 1 cut(s) 406
EcoRI GAATTC 2 cut(s) 361, 533
EcoRII CCWGG 1 cut(s) 356
EcoT22I ATGCAT 1 cut(s) 591
EcoT38I GRGCYC 1 cut(s) 408
Esp3I CGTCTC 3 cut(s) 55, 112, 445
FaeI CATG 4 cut(s) 64, 167, 632, 811
FaqI GGGAC 1 cut(s) 332
FatI CATG 4 cut(s) 60, 163, 628, 807
FauNDI CATATG 1 cut(s) 814
FblI GTMKAC 1 cut(s) 390
Fnu4HI GCNGC 9 cut(s) 7, 15, 34, 37, 115, 143, 354, 970, 1014
FokI GGATG 4 cut(s) 189, 611, 837, 972
FriOI GRGCYC 1 cut(s) 408
Fsp4HI GCNGC 9 cut(s) 7, 15, 34, 37, 115, 143, 354, 970, 1014
FspBI CTAG 1 cut(s) 209
GlaI GCGC 3 cut(s) 5, 481, 696
GluI GCNGC 9 cut(s) 7, 15, 34, 37, 115, 143, 354, 970, 1014
GsuI CTGGAG 1 cut(s) 136
HaeIII GGCC 3 cut(s) 36, 356, 643
HapII CCGG 4 cut(s) 72, 170, 325, 640
HgaI GACGC 2 cut(s) 20, 462
HhaI GCGC 3 cut(s) 6, 482, 697
Hin1II CATG 4 cut(s) 64, 167, 632, 811
Hin6I GCGC 3 cut(s) 4, 480, 695
HinP1I GCGC 3 cut(s) 4, 480, 695
HincII GTYRAC 1 cut(s) 789
HindII GTYRAC 1 cut(s) 789
HindIII AAGCTT 1 cut(s) 995
HinfI GANTC 2 cut(s) 190, 673
HpaII CCGG 4 cut(s) 72, 170, 325, 640
HphI GGTGA 2 cut(s) 37, 755
Hpy166II GTNNAC 3 cut(s) 228, 391, 789
Hpy188I TCNGA 7 cut(s) 199, 312, 367, 672, 709, 765, 796
Hpy188III TCNNGA 5 cut(s) 170, 218, 490, 554, 603
Hpy8I GTNNAC 3 cut(s) 228, 391, 789
Hpy99I CGWCG 1 cut(s) 14
HpyAV CCTTC 2 cut(s) 94, 309
HpyCH4III ACNGT 5 cut(s) 49, 106, 232, 469, 1004
HpyCH4IV ACGT 2 cut(s) 42, 174
HpyCH4V TGCA 8 cut(s) 96, 117, 382, 589, 756, 770, 953, 985
HpyF10VI GCNNNNNNNGC 2 cut(s) 640, 1013
HpyF3I CTNAG 4 cut(s) 216, 762, 795, 865
HpySE526I ACGT 2 cut(s) 42, 174
Hsp92II CATG 4 cut(s) 64, 167, 632, 811
HspAI GCGC 3 cut(s) 4, 480, 695
Kpn2I TCCGGA 1 cut(s) 169
Kzo9I GATC 1 cut(s) 199
LmnI GCTCC 3 cut(s) 172, 403, 843
Lsp1109I GCAGC 3 cut(s) 101, 981, 1000
LweI GCATC 2 cut(s) 576, 994
MaeI CTAG 1 cut(s) 209
MaeII ACGT 2 cut(s) 42, 174
MaeIII GTNAC 3 cut(s) 43, 554, 620
MalI GATC 1 cut(s) 201
MboI GATC 1 cut(s) 199
MboII GAAGA 3 cut(s) 79, 533, 950
MfeI CAATTG 1 cut(s) 751
MhlI GDGCHC 1 cut(s) 408
MluCI AATT 6 cut(s) 361, 502, 533, 662, 751, 961
MmeI TCCRAC 1 cut(s) 167
Mph1103I ATGCAT 1 cut(s) 591
MroI TCCGGA 1 cut(s) 169
MseI TTAA 2 cut(s) 660, 999
MslI CAYNNNNRTG 1 cut(s) 629
MspI CCGG 4 cut(s) 72, 170, 325, 640
MspR9I CCNGG 1 cut(s) 358
MunI CAATTG 1 cut(s) 751
MvaI CCWGG 1 cut(s) 358
MwoI GCNNNNNNNGC 2 cut(s) 640, 1013
NdeI CATATG 1 cut(s) 814
NdeII GATC 1 cut(s) 199
NheI GCTAGC 1 cut(s) 208
NlaIII CATG 4 cut(s) 64, 167, 632, 811
NlaIV GGNNCC 2 cut(s) 76, 320
NmeAIII GCCGAG 1 cut(s) 674
NmuCI GTSAC 2 cut(s) 43, 554
NotI GCGGCCGC 1 cut(s) 34
NsiI ATGCAT 1 cut(s) 591
PcsI WCGNNNNNNNCGW 1 cut(s) 236
PfeI GAWTC 2 cut(s) 190, 673
PflFI GACNNNGTC 1 cut(s) 176
PkrI GCNGC 9 cut(s) 8, 16, 35, 38, 116, 144, 355, 971, 1015
PsiI TTATAA 1 cut(s) 447
Psp124BI GAGCTC 1 cut(s) 408
Psp6I CCWGG 1 cut(s) 356
PspGI CCWGG 1 cut(s) 356
PspN4I GGNNCC 2 cut(s) 76, 320
PspPI GGNCC 1 cut(s) 319
PstI CTGCAG 1 cut(s) 98
PsyI GACNNNGTC 1 cut(s) 176
RsaI GTAC 2 cut(s) 242, 287
RsaNI GTAC 2 cut(s) 241, 286
RseI CAYNNNNRTG 1 cut(s) 629
SacI GAGCTC 1 cut(s) 408
SaqAI TTAA 2 cut(s) 660, 999
SatI GCNGC 9 cut(s) 7, 15, 34, 37, 115, 143, 354, 970, 1014
Sau3AI GATC 1 cut(s) 199
Sau96I GGNCC 1 cut(s) 319
ScrFI CCNGG 1 cut(s) 358
SduI GDGCHC 1 cut(s) 408
SfaNI GCATC 2 cut(s) 576, 994
SfcI CTRYAG 1 cut(s) 94
SinI GGWCC 1 cut(s) 319
SmiMI CAYNNNNRTG 1 cut(s) 629
SmlI CTYRAG 2 cut(s) 137, 858
SmoI CTYRAG 2 cut(s) 137, 858
Sse9I AATT 6 cut(s) 361, 502, 533, 662, 751, 961
SsiI CCGC 9 cut(s) 33, 37, 57, 142, 181, 206, 322, 353, 1016
SspI AATATT 1 cut(s) 247
SspMI CTAG 1 cut(s) 209
SstI GAGCTC 1 cut(s) 408
StyD4I CCNGG 1 cut(s) 356
TaaI ACNGT 5 cut(s) 49, 106, 232, 469, 1004
TaiI ACGT 2 cut(s) 45, 177
TasI AATT 6 cut(s) 361, 502, 533, 662, 751, 961
TauI GCSGC 4 cut(s) 36, 39, 145, 356
TfiI GAWTC 2 cut(s) 190, 673
Tru1I TTAA 2 cut(s) 660, 999
Tru9I TTAA 2 cut(s) 660, 999
TscAI CASTG 1 cut(s) 1009
TseFI GTSAC 2 cut(s) 43, 554
TseI GCWGC 5 cut(s) 6, 14, 114, 969, 1013
Tsp45I GTSAC 2 cut(s) 43, 554
TspDTI ATGAA 2 cut(s) 360, 951
TspGWI ACGGA 1 cut(s) 561
TspRI CASTG 1 cut(s) 1009
Tth111I GACNNNGTC 1 cut(s) 176
VpaK11BI GGWCC 1 cut(s) 319
XapI RAATTY 2 cut(s) 361, 533
XmiI GTMKAC 1 cut(s) 390
XspI CTAG 1 cut(s) 209
Zsp2I ATGCAT 1 cut(s) 591
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.