RchiOBHm_Chr7g0184741

Carbon catabolite repressor protein 4 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0012263
Physical Location & Seq
Reverse (-)
5181022 .. 5184837
3816 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ16483

Sequence Viewer

Length: 1311 bp
ATGCGCTGCGACGCTGCTTCCTCTTGGCTCTGCGGCCGCCACGTCACCGTCTCAACCGCCATGCCGAACGCCGGAACCTCCTCCTTCTTCCTCTGCAGACCCACCGTCTCCTGCTGCACCAACACTCCCAACCCACTCAAGCGGCGATACTCCAGTAGTAGTCATGCTCCGGAAGTTGTCCGCCGTTGGATTCAATCGGATCATCCGCTAGCTTCTCAGGATAGGTTCACGGTTGCTTCGTACAATATTTTGGGAGATAGAAATGCTTTTCGGCATAGAGACCTGTACGGGAATGTGCCTTTTATGTATCTGAAATGGGACCGCCGGAAAAGGGTCATCTGCGATGAACTTGCGGCGTGGAATTCTGATATAGTTTGCTTGCAAGAGGTAGACAAGTATTTGGAGCTCGCTGATATTTTGGCAAAACTGGGATATGCTGGTTCTTATAAGAGACGCACAGGAGATACCGTTGATGGTTGCGCTACTTTCTGGAAATCTCATAATTTTCGGTTGTTAGAGGAAGAGAGCATTGAATTCAAGGGATACGGACTTCGTGACAATGTTGCTCAACTCTCGGTTTTTGAGATGCATAAAGACAAATCAAGAAAGTTAGTGATTGGTAACATCCATGTGCTTTACCGGCCAAGCCGAGGAGAAGTTAAATTGGGTCAGATTCGTTTTCTCATATCAAGGGCGCAGACCCTCTCGGAGAAATGGGGTAATGCCCCTGTTGTCCTTTGTGGTGATTTCAATTGCACTCCTCAGAGTGCAATATACAAGTTCTTGTCAACATCTGAGCTAAATATCATGTCATATGACAGAACAGAGTTATCTGGGCAGAGGAGCTGTCATCCTGCTCAAGTCTTAGGTGTCAAACAACGAATGAGCAGTCCATTGAGCTTGATAGATGGATTGTTGAAACATAACTGGACAGATGAAGAGGTTAGAGTTGCAAATGGTAATTCTGGCAGCCATTCAGTTGTGCATCCCTTGAAGCTTAACAGTGCTTATGCTACGGTTCAGGGTTCTACAGCAACACGGGGATCCAGTGGTGAGCCTTTAGCTACTTCCTACCACTCAAAGTTTCTTGGAACCGTTGACTACTTATGGTACTCGGATGGTCTTGTGCCGACAGGAGTTATGGATACAGTTCCACTTGACACTCTCCAGAGGATTGGTAGCCTCCCTTGCAAGAAAGTGGGCAGCGATCACCTGGCTTTAGTTTCTGAGTTTGCCTTCACACCAGGCACGAAGGAAGGCAACAACACAACTGCATCCACAACTGAAAATTCTTTACCAGCATTGTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exo_endo_phos

Protein Analysis

436

Amino Acids

48.45

Weight (kDa)

8.82

Isoelectric Point (pI)

51.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exo_endo_phos PF03372 79 - 404 4.4e-18 Endonuclease/Exonuclease/phosphatase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012263)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18500 AT3G18500 AT3G18500 AT3G18500
fragaria_vesca FvH4_5g12590
malus_domestica MD06G1212300.v1.1
prunus_persica Prupe.5G218400_v2.0.a1
pyrus_communis pycom06g18950
rosa_chinensis RchiOBHm_Chr7g0184741
rosa_laevigata RLG00000004954
rosa_multiflora Rmu_co8486587.1_g000001 Rmu_ssc0000289.1_g000017
rosa_roxburghii Rroxscaffold_3G00269380
rosa_rugosa Rorug06G0464900
rosa_samantha Rh7AG078000 Rh7BG069300 Rh7CG070100 Rh7DG069500
rosa_wichuraiana Rw7G005740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 447
AccI GTMKAC 1 cut(s) 390
AccIII TCCGGA 1 cut(s) 169
AciI CCGC 8 cut(s) 33, 37, 57, 142, 181, 206, 322, 353
AclWI GGATC 3 cut(s) 207, 1038, 1051
AcoI YGGCCR 2 cut(s) 34, 641
AcsI RAATTY 3 cut(s) 361, 533, 1288
AfaI GTAC 3 cut(s) 242, 287, 1112
AfiI CCNNNNNNNGG 3 cut(s) 71, 331, 650
AgsI TTSAA 6 cut(s) 194, 533, 538, 751, 919, 994
AhdI GACNNNNNGTC 1 cut(s) 104
AjiI CACGTC 1 cut(s) 43
AjnI CCWGG 2 cut(s) 1212, 1243
AluBI AGCT 7 cut(s) 212, 406, 799, 846, 900, 997, 1064
AluI AGCT 7 cut(s) 212, 406, 799, 846, 900, 997, 1064
Alw21I GWGCWC 1 cut(s) 408
Alw26I GTCTC 4 cut(s) 55, 112, 273, 445
AlwI GGATC 3 cut(s) 207, 1038, 1051
Aor13HI TCCGGA 1 cut(s) 169
AoxI GGCC 2 cut(s) 34, 641
ApeKI GCWGC 5 cut(s) 6, 14, 114, 969, 1203
ApoI RAATTY 3 cut(s) 361, 533, 1288
ArsI GACNNNNNNTTYG 2 cut(s) 874, 906
AspLEI GCGC 3 cut(s) 6, 482, 697
AspS9I GGNCC 1 cut(s) 319
AsuHPI GGTGA 4 cut(s) 37, 755, 1064, 1202
AsuNHI GCTAGC 1 cut(s) 208
AvaII GGWCC 1 cut(s) 319
BaeI ACNNNNGTAYC 2 cut(s) 139, 172
BamHI GGATCC 1 cut(s) 1043
BanII GRGCYC 1 cut(s) 408
Bbv12I GWGCWC 1 cut(s) 408
BbvI GCAGC 3 cut(s) 101, 981, 1215
BccI CCATC 3 cut(s) 467, 902, 1112
BceAI ACGGC 1 cut(s) 168
BcgI CGANNNNNNTGC 2 cut(s) 332, 366
BciT130I CCWGG 2 cut(s) 1214, 1245
BciVI GTATCC 2 cut(s) 536, 1138
BcoDI GTCTC 4 cut(s) 55, 112, 273, 445
BfaI CTAG 2 cut(s) 209, 1309
BfmI CTRYAG 2 cut(s) 94, 1029
BfuI GTATCC 2 cut(s) 536, 1138
BisI GCNGC 9 cut(s) 7, 15, 34, 37, 115, 143, 354, 970, 1204
BlsI GCNGC 9 cut(s) 8, 16, 35, 38, 116, 144, 355, 971, 1205
Bme1390I CCNGG 2 cut(s) 1214, 1245
Bme18I GGWCC 1 cut(s) 319
BmeRI GACNNNNNGTC 1 cut(s) 104
BmgBI CACGTC 1 cut(s) 43
BmgT120I GGNCC 1 cut(s) 319
BmiI GGNNCC 4 cut(s) 76, 320, 1045, 1093
BmrFI CCNGG 2 cut(s) 1214, 1245
BmrI ACTGGG 1 cut(s) 437
BmsI GCATC 3 cut(s) 576, 994, 1283
BmtI GCTAGC 1 cut(s) 212
BmuI ACTGGG 1 cut(s) 437
BpmI CTGGAG 2 cut(s) 136, 1151
BpuEI CTTGAG 2 cut(s) 122, 843
BsaI GGTCTC 1 cut(s) 273
BsaJI CCNNGG 1 cut(s) 649
BsaWI WCCGGW 1 cut(s) 169
BsaXI ACNNNNNCTCC 4 cut(s) 109, 139, 453, 483
Bsc4I CCNNNNNNNGG 3 cut(s) 71, 331, 650
Bse118I RCCGGY 1 cut(s) 639
Bse1I ACTGG 4 cut(s) 153, 432, 932, 1047
BseAI TCCGGA 1 cut(s) 169
BseBI CCWGG 2 cut(s) 1214, 1245
BseDI CCNNGG 1 cut(s) 649
BseGI GGATG 6 cut(s) 202, 624, 850, 985, 1123, 1274
BseLI CCNNNNNNNGG 3 cut(s) 71, 331, 650
BseMII CTCAG 4 cut(s) 230, 776, 786, 1218
BseNI ACTGG 4 cut(s) 153, 432, 932, 1047
BseRI GAGGAG 4 cut(s) 70, 666, 750, 856
BseX3I CGGCCG 1 cut(s) 34
BseXI GCAGC 3 cut(s) 101, 981, 1215
BsgI GTGCAG 1 cut(s) 100
Bsh1285I CGRYCG 1 cut(s) 37
BshFI GGCC 2 cut(s) 36, 643
BsiEI CGRYCG 1 cut(s) 37
BsiHKAI GWGCWC 1 cut(s) 408
BsiSI CCGG 4 cut(s) 72, 170, 325, 640
BslFI GGGAC 1 cut(s) 332
BslI CCNNNNNNNGG 3 cut(s) 71, 331, 650
BsmAI GTCTC 4 cut(s) 55, 112, 273, 445
BsmBI CGTCTC 3 cut(s) 55, 112, 445
BsmFI GGGAC 1 cut(s) 332
BsnI GGCC 2 cut(s) 36, 643
Bso31I GGTCTC 1 cut(s) 273
Bsp1286I GDGCHC 1 cut(s) 408
Bsp13I TCCGGA 1 cut(s) 169
Bsp143I GATC 3 cut(s) 199, 1043, 1207
BspACI CCGC 8 cut(s) 33, 37, 57, 142, 181, 206, 322, 353
BspANI GGCC 2 cut(s) 36, 643
BspCNI CTCAG 4 cut(s) 229, 775, 787, 1219
BspEI TCCGGA 1 cut(s) 169
BspLI GGNNCC 4 cut(s) 76, 320, 1045, 1093
BspMAI CTGCAG 1 cut(s) 98
BspOI GCTAGC 1 cut(s) 212
BspPI GGATC 3 cut(s) 207, 1038, 1051
BspTNI GGTCTC 1 cut(s) 273
BsrFI RCCGGY 1 cut(s) 639
BsrI ACTGG 4 cut(s) 153, 432, 932, 1047
BssAI RCCGGY 1 cut(s) 639
BssECI CCNNGG 1 cut(s) 649
BssMI GATC 3 cut(s) 199, 1043, 1207
Bst2UI CCWGG 2 cut(s) 1214, 1245
Bst4CI ACNGT 8 cut(s) 49, 106, 232, 469, 1004, 1018, 1096, 1150
Bst6I CTCTTC 2 cut(s) 516, 933
BstC8I GCNNGC 3 cut(s) 210, 380, 408
BstDEI CTNAG 5 cut(s) 216, 762, 795, 865, 1227
BstF5I GGATG 6 cut(s) 202, 624, 850, 985, 1123, 1274
BstHHI GCGC 3 cut(s) 6, 482, 697
BstKTI GATC 3 cut(s) 202, 1046, 1210
BstMAI GTCTC 4 cut(s) 55, 112, 273, 445
BstMBI GATC 3 cut(s) 199, 1043, 1207
BstMCI CGRYCG 1 cut(s) 37
BstMWI GCNNNNNNNGC 2 cut(s) 640, 1188
BstNI CCWGG 2 cut(s) 1214, 1245
BstSCI CCNGG 2 cut(s) 1212, 1243
BstSFI CTRYAG 2 cut(s) 94, 1029
BstV1I GCAGC 3 cut(s) 101, 981, 1215
BstX2I RGATCY 1 cut(s) 1043
BstXI CCANNNNNNTGG 1 cut(s) 1175
BstYI RGATCY 1 cut(s) 1043
BstZI CGGCCG 1 cut(s) 34
BsuI GTATCC 2 cut(s) 536, 1138
BsuRI GGCC 2 cut(s) 36, 643
BtgZI GCGATG 1 cut(s) 357
BtrI CACGTC 1 cut(s) 43
BtsCI GGATG 6 cut(s) 202, 624, 850, 985, 1123, 1274
BtsIMutI CAGTG 2 cut(s) 1009, 1054
Cac8I GCNNGC 3 cut(s) 210, 380, 408
CciNI GCGGCCGC 1 cut(s) 34
CfoI GCGC 3 cut(s) 6, 482, 697
Cfr10I RCCGGY 1 cut(s) 639
Cfr13I GGNCC 1 cut(s) 319
CseI GACGC 2 cut(s) 20, 462
Csp6I GTAC 3 cut(s) 241, 286, 1111
CviAII CATG 4 cut(s) 61, 164, 629, 808
CviQI GTAC 3 cut(s) 241, 286, 1111
DdeI CTNAG 5 cut(s) 216, 762, 795, 865, 1227
DpnI GATC 3 cut(s) 201, 1045, 1209
DpnII GATC 3 cut(s) 199, 1043, 1207
DriI GACNNNNNGTC 1 cut(s) 104
EaeI YGGCCR 2 cut(s) 34, 641
EagI CGGCCG 1 cut(s) 34
Eam1104I CTCTTC 2 cut(s) 516, 933
Eam1105I GACNNNNNGTC 1 cut(s) 104
EarI CTCTTC 2 cut(s) 516, 933
EciI GGCGGA 1 cut(s) 170
Ecl136II GAGCTC 1 cut(s) 406
EclXI CGGCCG 1 cut(s) 34
Eco24I GRGCYC 1 cut(s) 408
Eco31I GGTCTC 1 cut(s) 273
Eco47I GGWCC 1 cut(s) 319
Eco52I CGGCCG 1 cut(s) 34
Eco53kI GAGCTC 1 cut(s) 406
EcoICRI GAGCTC 1 cut(s) 406
EcoRI GAATTC 2 cut(s) 361, 533
EcoRII CCWGG 2 cut(s) 1212, 1243
EcoT22I ATGCAT 1 cut(s) 591
EcoT38I GRGCYC 1 cut(s) 408
Esp3I CGTCTC 3 cut(s) 55, 112, 445
FaeI CATG 4 cut(s) 64, 167, 632, 811
FaqI GGGAC 1 cut(s) 332
FatI CATG 4 cut(s) 60, 163, 628, 807
FauNDI CATATG 1 cut(s) 814
FblI GTMKAC 1 cut(s) 390
Fnu4HI GCNGC 9 cut(s) 7, 15, 34, 37, 115, 143, 354, 970, 1204
FokI GGATG 6 cut(s) 189, 611, 837, 972, 1130, 1261
FriOI GRGCYC 1 cut(s) 408
Fsp4HI GCNGC 9 cut(s) 7, 15, 34, 37, 115, 143, 354, 970, 1204
FspBI CTAG 2 cut(s) 209, 1309
GlaI GCGC 3 cut(s) 5, 481, 696
GluI GCNGC 9 cut(s) 7, 15, 34, 37, 115, 143, 354, 970, 1204
GsuI CTGGAG 2 cut(s) 136, 1151
HaeIII GGCC 2 cut(s) 36, 643
HapII CCGG 4 cut(s) 72, 170, 325, 640
HgaI GACGC 2 cut(s) 20, 462
HhaI GCGC 3 cut(s) 6, 482, 697
Hin1II CATG 4 cut(s) 64, 167, 632, 811
Hin6I GCGC 3 cut(s) 4, 480, 695
HinP1I GCGC 3 cut(s) 4, 480, 695
HincII GTYRAC 2 cut(s) 789, 1099
HindII GTYRAC 2 cut(s) 789, 1099
HindIII AAGCTT 1 cut(s) 995
HinfI GANTC 2 cut(s) 190, 673
HpaII CCGG 4 cut(s) 72, 170, 325, 640
HphI GGTGA 4 cut(s) 37, 755, 1064, 1202
Hpy166II GTNNAC 4 cut(s) 228, 391, 789, 1099
Hpy188I TCNGA 9 cut(s) 199, 312, 367, 672, 709, 765, 796, 1117, 1228
Hpy188III TCNNGA 6 cut(s) 170, 218, 490, 554, 603, 1168
Hpy8I GTNNAC 4 cut(s) 228, 391, 789, 1099
Hpy99I CGWCG 1 cut(s) 14
HpyAV CCTTC 4 cut(s) 94, 1246, 1246, 1250
HpyCH4III ACNGT 8 cut(s) 49, 106, 232, 469, 1004, 1018, 1096, 1150
HpyCH4IV ACGT 1 cut(s) 42
HpyF10VI GCNNNNNNNGC 2 cut(s) 640, 1188
HpyF3I CTNAG 5 cut(s) 216, 762, 795, 865, 1227
HpySE526I ACGT 1 cut(s) 42
Hsp92II CATG 4 cut(s) 64, 167, 632, 811
HspAI GCGC 3 cut(s) 4, 480, 695
Kpn2I TCCGGA 1 cut(s) 169
Kzo9I GATC 3 cut(s) 199, 1043, 1207
LmnI GCTCC 3 cut(s) 172, 403, 843
Lsp1109I GCAGC 3 cut(s) 101, 981, 1215
LweI GCATC 3 cut(s) 576, 994, 1283
MaeI CTAG 2 cut(s) 209, 1309
MaeII ACGT 1 cut(s) 42
MaeIII GTNAC 3 cut(s) 43, 554, 620
MalI GATC 3 cut(s) 201, 1045, 1209
MboI GATC 3 cut(s) 199, 1043, 1207
MboII GAAGA 3 cut(s) 79, 533, 950
MfeI CAATTG 1 cut(s) 751
MflI RGATCY 1 cut(s) 1043
MhlI GDGCHC 1 cut(s) 408
MluCI AATT 7 cut(s) 361, 502, 533, 662, 751, 961, 1288
MmeI TCCRAC 1 cut(s) 167
Mph1103I ATGCAT 1 cut(s) 591
MroI TCCGGA 1 cut(s) 169
MseI TTAA 2 cut(s) 660, 999
MslI CAYNNNNRTG 1 cut(s) 629
MspI CCGG 4 cut(s) 72, 170, 325, 640
MspR9I CCNGG 2 cut(s) 1214, 1245
MunI CAATTG 1 cut(s) 751
MvaI CCWGG 2 cut(s) 1214, 1245
MwoI GCNNNNNNNGC 2 cut(s) 640, 1188
NdeI CATATG 1 cut(s) 814
NdeII GATC 3 cut(s) 199, 1043, 1207
NheI GCTAGC 1 cut(s) 208
NlaIII CATG 4 cut(s) 64, 167, 632, 811
NlaIV GGNNCC 4 cut(s) 76, 320, 1045, 1093
NmeAIII GCCGAG 1 cut(s) 674
NmuCI GTSAC 2 cut(s) 43, 554
NotI GCGGCCGC 1 cut(s) 34
NsiI ATGCAT 1 cut(s) 591
PcsI WCGNNNNNNNCGW 1 cut(s) 236
PfeI GAWTC 2 cut(s) 190, 673
PkrI GCNGC 9 cut(s) 8, 16, 35, 38, 116, 144, 355, 971, 1205
PsiI TTATAA 1 cut(s) 447
Psp124BI GAGCTC 1 cut(s) 408
Psp6I CCWGG 2 cut(s) 1212, 1243
PspGI CCWGG 2 cut(s) 1212, 1243
PspN4I GGNNCC 4 cut(s) 76, 320, 1045, 1093
PspPI GGNCC 1 cut(s) 319
PstI CTGCAG 1 cut(s) 98
PsuI RGATCY 1 cut(s) 1043
RsaI GTAC 3 cut(s) 242, 287, 1112
RsaNI GTAC 3 cut(s) 241, 286, 1111
RseI CAYNNNNRTG 1 cut(s) 629
SacI GAGCTC 1 cut(s) 408
SaqAI TTAA 2 cut(s) 660, 999
SatI GCNGC 9 cut(s) 7, 15, 34, 37, 115, 143, 354, 970, 1204
Sau3AI GATC 3 cut(s) 199, 1043, 1207
Sau96I GGNCC 1 cut(s) 319
ScrFI CCNGG 2 cut(s) 1214, 1245
SduI GDGCHC 1 cut(s) 408
SfaNI GCATC 3 cut(s) 576, 994, 1283
SfcI CTRYAG 2 cut(s) 94, 1029
SinI GGWCC 1 cut(s) 319
SmiMI CAYNNNNRTG 1 cut(s) 629
SmlI CTYRAG 2 cut(s) 137, 858
SmoI CTYRAG 2 cut(s) 137, 858
Sse9I AATT 7 cut(s) 361, 502, 533, 662, 751, 961, 1288
SsiI CCGC 8 cut(s) 33, 37, 57, 142, 181, 206, 322, 353
SspI AATATT 1 cut(s) 247
SspMI CTAG 2 cut(s) 209, 1309
SstI GAGCTC 1 cut(s) 408
StyD4I CCNGG 2 cut(s) 1212, 1243
TaaI ACNGT 8 cut(s) 49, 106, 232, 469, 1004, 1018, 1096, 1150
TaiI ACGT 1 cut(s) 45
TasI AATT 7 cut(s) 361, 502, 533, 662, 751, 961, 1288
TauI GCSGC 4 cut(s) 36, 39, 145, 356
TfiI GAWTC 2 cut(s) 190, 673
Tru1I TTAA 2 cut(s) 660, 999
Tru9I TTAA 2 cut(s) 660, 999
TscAI CASTG 2 cut(s) 1009, 1054
TseFI GTSAC 2 cut(s) 43, 554
TseI GCWGC 5 cut(s) 6, 14, 114, 969, 1203
Tsp45I GTSAC 2 cut(s) 43, 554
TspDTI ATGAA 2 cut(s) 360, 951
TspGWI ACGGA 1 cut(s) 561
TspRI CASTG 2 cut(s) 1009, 1054
VpaK11BI GGWCC 1 cut(s) 319
XapI RAATTY 3 cut(s) 361, 533, 1288
XmiI GTMKAC 1 cut(s) 390
XspI CTAG 2 cut(s) 209, 1309
Zsp2I ATGCAT 1 cut(s) 591
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.