AT3G19350

RNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0016143
Physical Location & Seq
Forward (+)
6705474 .. 6706127
654 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G19350.1

Sequence Viewer

Length: 312 bp
ATGAATCGTTTATGCTTTTTTAACAAAGTTGTAAAAGTTGCCCGTGGTGATTCACCTCCTTTTGATCTTGCTTCTTTACCTCCCAAAGAACAACGAGATTTGATTGGTGAAACTTTGTTCTTTATGGTGGAAGAACTTGAGCCACAGTTTGCACCAAAAATCACAGGAATGATTCTTGAATTGGACCAAGACAAGGTCCTTCATCTGCTGGTAACACCTAAAGCCTTCAAAGAAATGGTCAAAGAGGCAATGGAGGTCCTAGCGCACTCCTTTCTGCAACAGATGAAAATTGCTAGGGGAAAAAGATGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000288 GO:0000289 GO:0000956 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0003743 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006401 GO:0006402 GO:0006412 GO:0006413 GO:0006417 GO:0006446 GO:0006518 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0007275 GO:0008135 GO:0008143 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009628 GO:0009651 GO:0009653 GO:0009791 GO:0009889 GO:0009892 GO:0009894 GO:0009987 GO:0010035 GO:0010038 GO:0010154 GO:0010467 GO:0010468 GO:0010556 GO:0010605 GO:0010608 GO:0010629 GO:0016070 GO:0016071 GO:0019219 GO:0019222 GO:0019439 GO:0019538 GO:0022414 GO:0031323 GO:0031326 GO:0031329 GO:0032268 GO:0032501 GO:0032502 GO:0034248 GO:0034641 GO:0034645 GO:0034655 GO:0042221 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046686 GO:0046700 GO:0048316 GO:0048317 GO:0048519 GO:0048580 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051246 GO:0051252 GO:0060211 GO:0060255 GO:0061013 GO:0061458 GO:0065007 GO:0070717 GO:0071704 GO:0080050 GO:0080090 GO:0090304 GO:0090698 GO:0097159 GO:1900151 GO:1901360 GO:1901361 GO:1901363 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1903311 GO:2000014 GO:2000026 GO:2000112 GO:2000241
KEGG Pathways
Metabolic & Signaling
ko03013 ko03015 ko03018 map03013 map03015 map03018
Pfam Domains
Protein Families
PABP RRM_1

Protein Analysis

103

Amino Acids

11.82

Weight (kDa)

7.79

Isoelectric Point (pI)

36.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MLLE PF00658 22 - 87 3.7e-24 MLLE domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016143)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G19350
fragaria_vesca FvH4_2g34070
rosa_chinensis RchiOBHm_Chr6g0308281
rosa_laevigata RLG00000010651
rosa_multiflora Rmu_sc0005523.1_g000005 Rmu_sc0013917.1_g000002 Rmu_ssc0000355.1_g000010 Rmu_ssc0000355.1_g000012
rosa_roxburghii Rroxscaffold_7G00160290
rosa_samantha Rh6AG474800 Rh6BG485400 Rh6CG490500 Rh6DG476900 Rh6DG477100
rosa_wichuraiana Rw6G041410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 1 cut(s) 193
AgsI TTSAA 2 cut(s) 179, 229
ArsI GACNNNNNNTTYG 2 cut(s) 222, 254
AspLEI GCGC 1 cut(s) 265
AspS9I GGNCC 3 cut(s) 184, 196, 256
AsuHPI GGTGA 3 cut(s) 45, 59, 119
AvaII GGWCC 3 cut(s) 184, 196, 256
BfaI CTAG 2 cut(s) 260, 294
Bme18I GGWCC 3 cut(s) 184, 196, 256
BmgT120I GGNCC 3 cut(s) 184, 196, 256
BpuEI CTTGAG 1 cut(s) 158
BsaJI CCNNGG 1 cut(s) 43
Bsc4I CCNNNNNNNGG 1 cut(s) 193
Bse3DI GCAATG 1 cut(s) 255
BseDI CCNNGG 1 cut(s) 43
BseLI CCNNNNNNNGG 1 cut(s) 193
BseMI GCAATG 1 cut(s) 255
BslI CCNNNNNNNGG 1 cut(s) 193
Bsp143I GATC 1 cut(s) 64
BsrDI GCAATG 1 cut(s) 255
BssECI CCNNGG 1 cut(s) 43
BssMI GATC 1 cut(s) 64
Bst4CI ACNGT 1 cut(s) 147
BstDSI CCRYGG 1 cut(s) 43
BstHHI GCGC 1 cut(s) 265
BstKTI GATC 1 cut(s) 67
BstMBI GATC 1 cut(s) 64
BtgI CCRYGG 1 cut(s) 43
CfoI GCGC 1 cut(s) 265
Cfr13I GGNCC 3 cut(s) 184, 196, 256
CviJI RGCY 2 cut(s) 142, 224
CviKI_1 RGCY 2 cut(s) 142, 224
DpnI GATC 1 cut(s) 66
DpnII GATC 1 cut(s) 64
Eco47I GGWCC 3 cut(s) 184, 196, 256
EcoO109I RGGNCCY 2 cut(s) 196, 256
FaiI YATR 2 cut(s) 13, 125
FspBI CTAG 2 cut(s) 260, 294
GlaI GCGC 1 cut(s) 264
HhaI GCGC 1 cut(s) 265
Hin6I GCGC 1 cut(s) 263
HinP1I GCGC 1 cut(s) 263
HinfI GANTC 3 cut(s) 4, 50, 172
HphI GGTGA 3 cut(s) 45, 59, 119
Hpy188III TCNNGA 1 cut(s) 176
HpyAV CCTTC 2 cut(s) 209, 235
HpyCH4III ACNGT 1 cut(s) 147
HpyCH4V TGCA 2 cut(s) 152, 277
HspAI GCGC 1 cut(s) 263
Kzo9I GATC 1 cut(s) 64
LpnPI CCDG 2 cut(s) 150, 194
MaeI CTAG 2 cut(s) 260, 294
MaeIII GTNAC 1 cut(s) 211
MalI GATC 1 cut(s) 66
MboI GATC 1 cut(s) 64
MboII GAAGA 1 cut(s) 143
MluCI AATT 2 cut(s) 179, 288
MnlI CCTC 4 cut(s) 66, 90, 238, 247
MseI TTAA 1 cut(s) 21
MslI CAYNNNNRTG 1 cut(s) 167
NdeII GATC 1 cut(s) 64
PfeI GAWTC 3 cut(s) 4, 50, 172
PflFI GACNNNGTC 1 cut(s) 194
PpuMI RGGWCCY 2 cut(s) 196, 256
Psp5II RGGWCCY 2 cut(s) 196, 256
PspPI GGNCC 3 cut(s) 184, 196, 256
PspPPI RGGWCCY 2 cut(s) 196, 256
PsyI GACNNNGTC 1 cut(s) 194
RseI CAYNNNNRTG 1 cut(s) 167
SaqAI TTAA 1 cut(s) 21
Sau3AI GATC 1 cut(s) 64
Sau96I GGNCC 3 cut(s) 184, 196, 256
SetI ASST 5 cut(s) 58, 82, 198, 220, 258
SinI GGWCC 3 cut(s) 184, 196, 256
SmiMI CAYNNNNRTG 1 cut(s) 167
SmlI CTYRAG 1 cut(s) 137
SmoI CTYRAG 1 cut(s) 137
Sse9I AATT 2 cut(s) 179, 288
SspMI CTAG 2 cut(s) 260, 294
TaaI ACNGT 1 cut(s) 147
TasI AATT 2 cut(s) 179, 288
TfiI GAWTC 3 cut(s) 4, 50, 172
Tru1I TTAA 1 cut(s) 21
Tru9I TTAA 1 cut(s) 21
TspDTI ATGAA 3 cut(s) 17, 191, 299
Tth111I GACNNNGTC 1 cut(s) 194
VpaK11BI GGWCC 3 cut(s) 184, 196, 256
XspI CTAG 2 cut(s) 260, 294
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.