Rh6DG476900

RNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0016143
Physical Location & Seq
Reverse (-)
64219515 .. 64224262
4748 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG476900.1

Sequence Viewer

Length: 681 bp
ATGGATCTCCAAGAAGGTAACATGTCCAAGGCTTTAGTTGCGTTGAATCCAGAAGCTGCTTCTCTGCCTATTCCCAAGCTCAAGAATGTCAGTCGACTACGAACAGAGCACCAAGTACGGGAACGTGATGATCCAAGCCCATACCTTCTTGCAATATGGACGCCAGCTCAAAGAGAGGAGATAAGTGAAGCTAATCAAGATAGTGATTTCAATTCCTGCGCTAATAATGATGAAGTACTCATGCCCAAGCCTGAGACTGTTTCTACAACAAGTAATGAACAGCTGCCGTCAAGGCCTGCTCAAGGACCAAGGCCCAGAGGTGCTTCGATGCCATACTATGGTGGTCCAATGATCAGGCAAGGCCAGCAGCCGCCAGTGCCACCACCCCATGTCAGTCCAAAACAAAGAACGTACTTTCAGTCTTTCATCCCCATGTCAGCGCAAATATTTCACCTCAGTGATACTGATATTCTCTTAATGGGTGCGCAGATGCTTGGTGAGGAATTGTTTCCTCTCGTTGAAATGTGGGAGAAGGACAAGGCAGCTAAGGTGACAGGCATGCTTCTGGAGATGGACAATCCTGAGATATTACATTTGCTAGAGTCACCAGAGGCTTTAAGGGCAAAAATTGTAGAGGCCATGGATGTCTTAGCGAAGGTAGCTGCCGATGGGAAACAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko03015 ko03018 map03013 map03015 map03018
Pfam Domains
Protein Families
PABP

Protein Analysis

226

Amino Acids

25.12

Weight (kDa)

5.0

Isoelectric Point (pI)

53.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MLLE PF00658 163 - 217 1e-23 MLLE domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016143)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G19350
fragaria_vesca FvH4_2g34070
rosa_chinensis RchiOBHm_Chr6g0308281
rosa_laevigata RLG00000010651
rosa_multiflora Rmu_sc0005523.1_g000005 Rmu_sc0013917.1_g000002 Rmu_ssc0000355.1_g000010 Rmu_ssc0000355.1_g000012
rosa_roxburghii Rroxscaffold_7G00160290
rosa_samantha Rh6AG474800 Rh6BG485400 Rh6CG490500 Rh6DG476900 Rh6DG477100
rosa_wichuraiana Rw6G041410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 486
AccB7I CCANNNNNTGG 1 cut(s) 338
AccI GTMKAC 1 cut(s) 94
AciI CCGC 1 cut(s) 371
AclWI GGATC 2 cut(s) 12, 125
AcyI GRCGYC 1 cut(s) 161
AfaI GTAC 3 cut(s) 117, 237, 413
AfiI CCNNNNNNNGG 3 cut(s) 118, 302, 338
AflIII ACRYGT 1 cut(s) 21
AgsI TTSAA 3 cut(s) 46, 211, 521
AleI CACNNNNGTG 1 cut(s) 456
AluBI AGCT 7 cut(s) 56, 79, 167, 191, 283, 545, 662
AluI AGCT 7 cut(s) 56, 79, 167, 191, 283, 545, 662
Alw21I GWGCWC 1 cut(s) 111
Alw26I GTCTC 1 cut(s) 248
AlwI GGATC 2 cut(s) 12, 125
AlwNI CAGNNNCTG 1 cut(s) 56
AoxI GGCC 4 cut(s) 293, 311, 361, 636
ApeKI GCWGC 5 cut(s) 56, 283, 367, 542, 662
Asp700I GAANNNNTTC 1 cut(s) 507
AspLEI GCGC 3 cut(s) 221, 442, 487
AspS9I GGNCC 3 cut(s) 305, 312, 344
AsuHPI GGTGA 4 cut(s) 443, 509, 562, 597
AvaII GGWCC 2 cut(s) 305, 344
Bbv12I GWGCWC 1 cut(s) 111
BbvI GCAGC 5 cut(s) 43, 270, 379, 554, 649
BccI CCATC 2 cut(s) 565, 662
BceAI ACGGC 1 cut(s) 271
BclI TGATCA 1 cut(s) 351
BcoDI GTCTC 1 cut(s) 248
BfaI CTAG 1 cut(s) 599
BglI GCCNNNNNGGC 1 cut(s) 292
BisI GCNGC 6 cut(s) 57, 284, 368, 371, 543, 663
BlsI GCNGC 6 cut(s) 58, 285, 369, 372, 544, 664
BmcAI AGTACT 1 cut(s) 237
Bme18I GGWCC 2 cut(s) 305, 344
BmgT120I GGNCC 3 cut(s) 305, 312, 344
BmsI GCATC 2 cut(s) 318, 480
BpmI CTGGAG 1 cut(s) 587
Bpu10I CCTNAGC 1 cut(s) 546
BpuEI CTTGAG 2 cut(s) 65, 285
BsaHI GRCGYC 1 cut(s) 161
BsaJI CCNNGG 3 cut(s) 27, 308, 639
Bsc4I CCNNNNNNNGG 3 cut(s) 118, 302, 338
Bse1I ACTGG 1 cut(s) 374
BseDI CCNNGG 3 cut(s) 27, 308, 639
BseGI GGATG 2 cut(s) 426, 649
BseLI CCNNNNNNNGG 3 cut(s) 118, 302, 338
BseMII CTCAG 3 cut(s) 243, 469, 573
BseNI ACTGG 1 cut(s) 374
BseRI GAGGAG 1 cut(s) 191
BseXI GCAGC 5 cut(s) 43, 270, 379, 554, 649
BshFI GGCC 4 cut(s) 295, 313, 363, 638
BsiHKAI GWGCWC 1 cut(s) 111
BslI CCNNNNNNNGG 3 cut(s) 118, 302, 338
BsmAI GTCTC 1 cut(s) 248
BsnI GGCC 4 cut(s) 295, 313, 363, 638
Bsp1286I GDGCHC 1 cut(s) 111
Bsp143I GATC 3 cut(s) 4, 130, 351
Bsp19I CCATGG 1 cut(s) 639
BspACI CCGC 1 cut(s) 371
BspANI GGCC 4 cut(s) 295, 313, 363, 638
BspCNI CTCAG 3 cut(s) 244, 468, 574
BspPI GGATC 2 cut(s) 12, 125
BsrI ACTGG 1 cut(s) 374
BssECI CCNNGG 3 cut(s) 27, 308, 639
BssMI GATC 3 cut(s) 4, 130, 351
BssNI GRCGYC 1 cut(s) 161
BssT1I CCWWGG 3 cut(s) 27, 308, 639
Bst4CI ACNGT 2 cut(s) 259, 678
BstACI GRCGYC 1 cut(s) 161
BstC8I GCNNGC 4 cut(s) 165, 297, 365, 560
BstDEI CTNAG 5 cut(s) 252, 455, 546, 582, 649
BstDSI CCRYGG 1 cut(s) 639
BstENI CCTNNNNNAGG 1 cut(s) 300
BstF5I GGATG 2 cut(s) 426, 649
BstHHI GCGC 3 cut(s) 221, 442, 487
BstKTI GATC 3 cut(s) 7, 133, 354
BstMAI GTCTC 1 cut(s) 248
BstMBI GATC 3 cut(s) 4, 130, 351
BstMWI GCNNNNNNNGC 6 cut(s) 38, 292, 364, 376, 620, 659
BstNSI RCATGY 2 cut(s) 25, 562
BstV1I GCAGC 5 cut(s) 43, 270, 379, 554, 649
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BsuRI GGCC 4 cut(s) 295, 313, 363, 638
BtgI CCRYGG 1 cut(s) 639
BtsCI GGATG 2 cut(s) 426, 649
BtsIMutI CAGTG 2 cut(s) 381, 463
Cac8I GCNNGC 4 cut(s) 165, 297, 365, 560
CaiI CAGNNNCTG 1 cut(s) 56
CfoI GCGC 3 cut(s) 221, 442, 487
Cfr13I GGNCC 3 cut(s) 305, 312, 344
CseI GACGC 1 cut(s) 169
Csp6I GTAC 3 cut(s) 116, 236, 412
CviAII CATG 6 cut(s) 22, 241, 389, 433, 559, 640
CviQI GTAC 3 cut(s) 116, 236, 412
DdeI CTNAG 5 cut(s) 252, 455, 546, 582, 649
DpnI GATC 3 cut(s) 6, 132, 353
DpnII GATC 3 cut(s) 4, 130, 351
Eco130I CCWWGG 3 cut(s) 27, 308, 639
Eco147I AGGCCT 1 cut(s) 295
Eco47I GGWCC 2 cut(s) 305, 344
EcoNI CCTNNNNNAGG 1 cut(s) 300
EcoT14I CCWWGG 3 cut(s) 27, 308, 639
ErhI CCWWGG 3 cut(s) 27, 308, 639
FaeI CATG 6 cut(s) 25, 244, 392, 436, 562, 643
FatI CATG 6 cut(s) 21, 240, 388, 432, 558, 639
FbaI TGATCA 1 cut(s) 351
FblI GTMKAC 1 cut(s) 94
Fnu4HI GCNGC 6 cut(s) 57, 284, 368, 371, 543, 663
FokI GGATG 2 cut(s) 413, 656
Fsp4HI GCNGC 6 cut(s) 57, 284, 368, 371, 543, 663
FspBI CTAG 1 cut(s) 599
FspI TGCGCA 1 cut(s) 486
GlaI GCGC 3 cut(s) 220, 441, 486
GluI GCNGC 6 cut(s) 57, 284, 368, 371, 543, 663
GsuI CTGGAG 1 cut(s) 587
HaeIII GGCC 4 cut(s) 295, 313, 363, 638
HgaI GACGC 1 cut(s) 169
HhaI GCGC 3 cut(s) 221, 442, 487
Hin1I GRCGYC 1 cut(s) 161
Hin1II CATG 6 cut(s) 25, 244, 392, 436, 562, 643
Hin6I GCGC 3 cut(s) 219, 440, 485
HinP1I GCGC 3 cut(s) 219, 440, 485
HincII GTYRAC 1 cut(s) 95
HindII GTYRAC 1 cut(s) 95
HinfI GANTC 2 cut(s) 46, 602
HphI GGTGA 4 cut(s) 443, 509, 562, 597
Hpy166II GTNNAC 1 cut(s) 95
Hpy188III TCNNGA 5 cut(s) 50, 82, 197, 566, 581
Hpy8I GTNNAC 1 cut(s) 95
HpyAV CCTTC 4 cut(s) 8, 155, 526, 649
HpyCH4III ACNGT 2 cut(s) 259, 678
HpyCH4IV ACGT 2 cut(s) 124, 410
HpyCH4V TGCA 1 cut(s) 152
HpyF10VI GCNNNNNNNGC 6 cut(s) 38, 292, 364, 376, 620, 659
HpyF3I CTNAG 5 cut(s) 252, 455, 546, 582, 649
HpySE526I ACGT 2 cut(s) 124, 410
Hsp92I GRCGYC 1 cut(s) 161
Hsp92II CATG 6 cut(s) 25, 244, 392, 436, 562, 643
HspAI GCGC 3 cut(s) 219, 440, 485
Ksp22I TGATCA 1 cut(s) 351
Kzo9I GATC 3 cut(s) 4, 130, 351
Lsp1109I GCAGC 5 cut(s) 43, 270, 379, 554, 649
LweI GCATC 2 cut(s) 318, 480
MaeI CTAG 1 cut(s) 599
MaeII ACGT 2 cut(s) 124, 410
MaeIII GTNAC 3 cut(s) 17, 550, 603
MalI GATC 3 cut(s) 6, 132, 353
MboI GATC 3 cut(s) 4, 130, 351
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 1 cut(s) 111
MluCI AATT 3 cut(s) 211, 503, 627
MlyI GAGTC 1 cut(s) 611
MnlI CCTC 7 cut(s) 169, 311, 464, 493, 522, 604, 628
MroXI GAANNNNTTC 1 cut(s) 507
MseI TTAA 2 cut(s) 476, 617
MslI CAYNNNNRTG 2 cut(s) 431, 456
MspA1I CMGCKG 1 cut(s) 283
MwoI GCNNNNNNNGC 6 cut(s) 38, 292, 364, 376, 620, 659
NcoI CCATGG 1 cut(s) 639
NdeII GATC 3 cut(s) 4, 130, 351
NlaIII CATG 6 cut(s) 25, 244, 392, 436, 562, 643
NmuCI GTSAC 2 cut(s) 550, 603
NsbI TGCGCA 1 cut(s) 486
NspI RCATGY 2 cut(s) 25, 562
OliI CACNNNNGTG 1 cut(s) 456
PaeI GCATGC 1 cut(s) 562
PceI AGGCCT 1 cut(s) 295
PciI ACATGT 1 cut(s) 21
PdmI GAANNNNTTC 1 cut(s) 507
PfeI GAWTC 1 cut(s) 46
PflMI CCANNNNNTGG 1 cut(s) 338
PkrI GCNGC 6 cut(s) 58, 285, 369, 372, 544, 664
PleI GAGTC 1 cut(s) 610
PpsI GAGTC 1 cut(s) 610
PscI ACATGT 1 cut(s) 21
PspPI GGNCC 3 cut(s) 305, 312, 344
PstNI CAGNNNCTG 1 cut(s) 56
PsuI RGATCY 1 cut(s) 4
PvuII CAGCTG 1 cut(s) 283
RsaI GTAC 3 cut(s) 117, 237, 413
RsaNI GTAC 3 cut(s) 116, 236, 412
RseI CAYNNNNRTG 2 cut(s) 431, 456
SalI GTCGAC 1 cut(s) 93
SaqAI TTAA 2 cut(s) 476, 617
SatI GCNGC 6 cut(s) 57, 284, 368, 371, 543, 663
Sau3AI GATC 3 cut(s) 4, 130, 351
Sau96I GGNCC 3 cut(s) 305, 312, 344
ScaI AGTACT 1 cut(s) 237
SchI GAGTC 1 cut(s) 611
SduI GDGCHC 1 cut(s) 111
SfaNI GCATC 2 cut(s) 318, 480
SinI GGWCC 2 cut(s) 305, 344
SmiMI CAYNNNNRTG 2 cut(s) 431, 456
SmlI CTYRAG 2 cut(s) 80, 300
SmoI CTYRAG 2 cut(s) 80, 300
SphI GCATGC 1 cut(s) 562
Sse9I AATT 3 cut(s) 211, 503, 627
SseBI AGGCCT 1 cut(s) 295
SsiI CCGC 1 cut(s) 371
SspI AATATT 1 cut(s) 447
SspMI CTAG 1 cut(s) 599
StuI AGGCCT 1 cut(s) 295
StyI CCWWGG 3 cut(s) 27, 308, 639
TaaI ACNGT 2 cut(s) 259, 678
TaiI ACGT 2 cut(s) 127, 413
TaqI TCGA 2 cut(s) 94, 326
TasI AATT 3 cut(s) 211, 503, 627
TatI WGTACW 1 cut(s) 235
TauI GCSGC 1 cut(s) 373
TfiI GAWTC 1 cut(s) 46
Tru1I TTAA 2 cut(s) 476, 617
Tru9I TTAA 2 cut(s) 476, 617
TscAI CASTG 2 cut(s) 381, 463
TseFI GTSAC 2 cut(s) 550, 603
TseI GCWGC 5 cut(s) 56, 283, 367, 542, 662
Tsp45I GTSAC 2 cut(s) 550, 603
TspDTI ATGAA 3 cut(s) 246, 291, 415
TspRI CASTG 2 cut(s) 381, 463
Van91I CCANNNNNTGG 1 cut(s) 338
VpaK11BI GGWCC 2 cut(s) 305, 344
XagI CCTNNNNNAGG 1 cut(s) 300
XceI RCATGY 2 cut(s) 25, 562
XmiI GTMKAC 1 cut(s) 94
XmnI GAANNNNTTC 1 cut(s) 507
XspI CTAG 1 cut(s) 599
ZrmI AGTACT 1 cut(s) 237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.