Rroxscaffold_7G00160290

RNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0016143
Physical Location & Seq
Forward (+)
3291575 .. 3294891
3317 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00160290.1

Sequence Viewer

Length: 1056 bp
ATGGCAGATTCCAAATCAACGGATGCGTTCCCTCCGGTTTCGGTTCCACCCTTCGGAACAGCAGCTCCTCTCCTACTATCTCTCAAACAAGAAAGCCAACCCGGCCGTGCCGGAGGCTACAATACGATCGAGAGAGCCGTACGACTTACGAGGGCGCGAACCGTCCGAGTTACGAACCGGAGTTGCTATTCGTACGGTTACAAGGGGAGGAAGAGGCACCGGTACTTTTATACGGTTGGGGTTTCGGCGGAGGTGAAGAATACCAAGCGAGGGATGTTGGAAGAGGAAAGGGTTCTTTCGTTCTATGCCGAATATTTTCAAGATCAGATAGTGATTTCAATTCCTGCGCTAATAATGATGAAGTACTCATGCCCAAGCCTGAGACTGTTTCTACAACAAGTAATGAACAGTCCTCATGTTCATCTGATCGAAGTGCTGCAGTACACGAGTTTTCACAACTTTTCACGGGCACGAGTTTCACAATCGAGGCCAGCTGCTGCCGCTACTCCTAGTCCCATCCAAGCATCTGTTCCATCTTCAAGTTTACAACAGTTTTTCGATTTAACAGGACCTTTGGTCATACTGCCGTCATGGCCTGCTGAAGGACCAAGGCCCAGAGGTGCTTCGATGCCATACTATGGTGGTCCAATGATCAGGCAAGGCCAGCAGCCGCCAGTGCCACCACCCCATAACATTGCTCCTGGAGTTTATCATCTTCCACCTGGTGGCAACATGCCAGAATTACTAGCTCCACTTCCCGGTTACTTTCTACCGCCTGTTCCTCCTGTTCAGTCTTTGCCTAGGTCTGTGCCTACAGTTTTGACCACAGCCCTAGTGAATGCCACACCGGAAGAGAGAAGGAATATGCTTGGTGAGGAATTGTTTCCTCTCGTTGAAATGTGGGAGAAGGACAAGCCAGCTAAGGTGACAGGCATGCTTCTGGAGATGGACAATCCTGTGATATTACATTTGCTAGAGTCACCAGAGGCTTTAAGGGCTAAAATTGCAGAGGCCATGGATGTCTTGGCGAAGGTAGCTGCCGATGGGAAACAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko03015 ko03018 map03013 map03015 map03018
Pfam Domains
Protein Families
PABP

Protein Analysis

351

Amino Acids

38.74

Weight (kDa)

9.41

Isoelectric Point (pI)

69.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MLLE PF00658 278 - 342 3.9e-25 MLLE domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016143)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G19350
fragaria_vesca FvH4_2g34070
rosa_chinensis RchiOBHm_Chr6g0308281
rosa_laevigata RLG00000010651
rosa_multiflora Rmu_sc0005523.1_g000005 Rmu_sc0013917.1_g000002 Rmu_ssc0000355.1_g000010 Rmu_ssc0000355.1_g000012
rosa_roxburghii Rroxscaffold_7G00160290
rosa_samantha Rh6AG474800 Rh6BG485400 Rh6CG490500 Rh6DG476900 Rh6DG477100
rosa_wichuraiana Rw6G041410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 216
AccB7I CCANNNNNTGG 2 cut(s) 638, 725
AccII CGCG 1 cut(s) 157
AciI CCGC 4 cut(s) 248, 501, 671, 773
AcoI YGGCCR 1 cut(s) 103
AcuI CTGAAG 1 cut(s) 621
AdeI CACNNNGTG 1 cut(s) 725
AfaI GTAC 5 cut(s) 141, 194, 224, 365, 443
AfiI CCNNNNNNNGG 6 cut(s) 53, 270, 602, 638, 725, 758
AgeI ACCGGT 1 cut(s) 219
AgsI TTSAA 4 cut(s) 320, 339, 540, 896
AhdI GACNNNNNGTC 1 cut(s) 575
AjnI CCWGG 2 cut(s) 700, 721
AjuI GAANNNNNNNTTGG 2 cut(s) 513, 545
AloI GAACNNNNNNTCC 2 cut(s) 49, 81
AluBI AGCT 5 cut(s) 65, 494, 749, 920, 1037
AluI AGCT 5 cut(s) 65, 494, 749, 920, 1037
Alw26I GTCTC 1 cut(s) 376
AlwNI CAGNNNCTG 1 cut(s) 497
AoxI GGCC 6 cut(s) 103, 488, 593, 611, 661, 1011
ApeKI GCWGC 6 cut(s) 62, 436, 494, 497, 667, 1037
AsiGI ACCGGT 1 cut(s) 219
Asp700I GAANNNNTTC 3 cut(s) 291, 315, 882
AspA2I CCTAGG 1 cut(s) 800
AspLEI GCGC 2 cut(s) 157, 349
AspS9I GGNCC 4 cut(s) 569, 605, 612, 644
AsuC2I CCSGG 2 cut(s) 102, 759
AsuHPI GGTGA 4 cut(s) 265, 884, 937, 972
AvaII GGWCC 3 cut(s) 569, 605, 644
AvrII CCTAGG 1 cut(s) 800
BaeGI GKGCMC 1 cut(s) 472
BanI GGYRCC 1 cut(s) 216
BauI CACGAG 2 cut(s) 445, 471
BbvI GCAGC 6 cut(s) 74, 423, 481, 484, 679, 1024
BccI CCATC 4 cut(s) 524, 541, 940, 1037
BceAI ACGGC 3 cut(s) 90, 122, 571
BciT130I CCWGG 2 cut(s) 702, 723
BclI TGATCA 1 cut(s) 651
BcnI CCSGG 2 cut(s) 102, 759
BcoDI GTCTC 1 cut(s) 376
BfaI CTAG 5 cut(s) 510, 746, 801, 833, 974
BfmI CTRYAG 2 cut(s) 437, 813
BglI GCCNNNNNGGC 2 cut(s) 102, 592
BisI GCNGC 8 cut(s) 63, 437, 495, 498, 501, 668, 671, 1038
BlnI CCTAGG 1 cut(s) 800
BlsI GCNGC 8 cut(s) 64, 438, 496, 499, 502, 669, 672, 1039
BmcAI AGTACT 1 cut(s) 365
Bme1390I CCNGG 4 cut(s) 102, 702, 723, 759
Bme18I GGWCC 3 cut(s) 569, 605, 644
BmeRI GACNNNNNGTC 1 cut(s) 575
BmgT120I GGNCC 4 cut(s) 569, 605, 612, 644
BmiI GGNNCC 2 cut(s) 45, 218
BmrFI CCNGG 4 cut(s) 102, 702, 723, 759
BmsI GCATC 3 cut(s) 13, 533, 618
BpmI CTGGAG 2 cut(s) 723, 962
Bpu10I CCTNAGC 1 cut(s) 921
BpuMI CCSGG 2 cut(s) 102, 759
BsaJI CCNNGG 3 cut(s) 608, 800, 1014
BsaWI WCCGGW 4 cut(s) 34, 177, 219, 847
BsaXI ACNNNNNCTCC 2 cut(s) 49, 79
Bsc4I CCNNNNNNNGG 6 cut(s) 53, 270, 602, 638, 725, 758
Bse118I RCCGGY 1 cut(s) 219
Bse1I ACTGG 1 cut(s) 674
Bse3DI GCAATG 1 cut(s) 693
BseBI CCWGG 2 cut(s) 702, 723
BseDI CCNNGG 3 cut(s) 608, 800, 1014
BseGI GGATG 4 cut(s) 28, 279, 516, 1024
BseLI CCNNNNNNNGG 6 cut(s) 53, 270, 602, 638, 725, 758
BseMI GCAATG 1 cut(s) 693
BseMII CTCAG 1 cut(s) 371
BseNI ACTGG 1 cut(s) 674
BseRI GAGGAG 1 cut(s) 57
BseSI GKGCMC 1 cut(s) 472
BseX3I CGGCCG 1 cut(s) 103
BseXI GCAGC 6 cut(s) 74, 423, 481, 484, 679, 1024
Bsh1236I CGCG 1 cut(s) 157
Bsh1285I CGRYCG 2 cut(s) 106, 129
BshFI GGCC 6 cut(s) 105, 490, 595, 613, 663, 1013
BshNI GGYRCC 1 cut(s) 216
BshTI ACCGGT 1 cut(s) 219
BsiEI CGRYCG 2 cut(s) 106, 129
BsiSI CCGG 7 cut(s) 35, 102, 111, 178, 220, 759, 848
BsiWI CGTACG 2 cut(s) 139, 192
BslFI GGGAC 1 cut(s) 498
BslI CCNNNNNNNGG 6 cut(s) 53, 270, 602, 638, 725, 758
BsmAI GTCTC 1 cut(s) 376
BsmFI GGGAC 1 cut(s) 498
BsmI GAATGC 1 cut(s) 844
BsnI GGCC 6 cut(s) 105, 490, 595, 613, 663, 1013
Bsp1286I GDGCHC 1 cut(s) 472
Bsp143I GATC 4 cut(s) 126, 322, 426, 651
Bsp19I CCATGG 1 cut(s) 1014
BspACI CCGC 4 cut(s) 248, 501, 671, 773
BspANI GGCC 6 cut(s) 105, 490, 595, 613, 663, 1013
BspCNI CTCAG 1 cut(s) 372
BspFNI CGCG 1 cut(s) 157
BspLI GGNNCC 2 cut(s) 45, 218
BspMAI CTGCAG 1 cut(s) 441
BspT107I GGYRCC 1 cut(s) 216
BsrDI GCAATG 1 cut(s) 693
BsrFI RCCGGY 1 cut(s) 219
BsrI ACTGG 1 cut(s) 674
BssAI RCCGGY 1 cut(s) 219
BssECI CCNNGG 3 cut(s) 608, 800, 1014
BssMI GATC 4 cut(s) 126, 322, 426, 651
BssSI CACGAG 2 cut(s) 445, 471
BssT1I CCWWGG 3 cut(s) 608, 800, 1014
Bst2BI CACGAG 2 cut(s) 445, 471
Bst2UI CCWGG 2 cut(s) 702, 723
Bst4CI ACNGT 8 cut(s) 163, 197, 235, 387, 410, 552, 817, 1053
Bst6I CTCTTC 3 cut(s) 206, 276, 846
BstC8I GCNNGC 5 cut(s) 492, 597, 665, 918, 935
BstDEI CTNAG 2 cut(s) 380, 921
BstDSI CCRYGG 1 cut(s) 1014
BstENI CCTNNNNNAGG 1 cut(s) 600
BstF5I GGATG 4 cut(s) 28, 279, 516, 1024
BstFNI CGCG 1 cut(s) 157
BstHHI GCGC 2 cut(s) 157, 349
BstKTI GATC 4 cut(s) 129, 325, 429, 654
BstMAI GTCTC 1 cut(s) 376
BstMBI GATC 4 cut(s) 126, 322, 426, 651
BstMCI CGRYCG 2 cut(s) 106, 129
BstMWI GCNNNNNNNGC 8 cut(s) 102, 500, 592, 664, 676, 995, 1004, 1034
BstNI CCWGG 2 cut(s) 702, 723
BstNSI RCATGY 2 cut(s) 736, 937
BstSCI CCNGG 4 cut(s) 100, 700, 721, 757
BstSFI CTRYAG 2 cut(s) 437, 813
BstSLI GKGCMC 1 cut(s) 472
BstUI CGCG 1 cut(s) 157
BstV1I GCAGC 6 cut(s) 74, 423, 481, 484, 679, 1024
BstZI CGGCCG 1 cut(s) 103
BsuRI GGCC 6 cut(s) 105, 490, 595, 613, 663, 1013
BtgI CCRYGG 1 cut(s) 1014
BtsCI GGATG 4 cut(s) 28, 279, 516, 1024
BtsIMutI CAGTG 1 cut(s) 681
Cac8I GCNNGC 5 cut(s) 492, 597, 665, 918, 935
CaiI CAGNNNCTG 1 cut(s) 497
CfoI GCGC 2 cut(s) 157, 349
Cfr10I RCCGGY 1 cut(s) 219
Cfr13I GGNCC 4 cut(s) 569, 605, 612, 644
CsiI ACCWGGT 1 cut(s) 721
Csp6I GTAC 5 cut(s) 140, 193, 223, 364, 442
CspAI ACCGGT 1 cut(s) 219
CviAII CATG 6 cut(s) 369, 416, 591, 733, 934, 1015
CviQI GTAC 5 cut(s) 140, 193, 223, 364, 442
DdeI CTNAG 2 cut(s) 380, 921
DpnI GATC 4 cut(s) 128, 324, 428, 653
DpnII GATC 4 cut(s) 126, 322, 426, 651
DraIII CACNNNGTG 1 cut(s) 725
DriI GACNNNNNGTC 1 cut(s) 575
EaeI YGGCCR 1 cut(s) 103
EagI CGGCCG 1 cut(s) 103
Eam1104I CTCTTC 3 cut(s) 206, 276, 846
Eam1105I GACNNNNNGTC 1 cut(s) 575
EarI CTCTTC 3 cut(s) 206, 276, 846
EciI GGCGGA 1 cut(s) 263
EclXI CGGCCG 1 cut(s) 103
Eco130I CCWWGG 3 cut(s) 608, 800, 1014
Eco47I GGWCC 3 cut(s) 569, 605, 644
Eco52I CGGCCG 1 cut(s) 103
Eco57I CTGAAG 1 cut(s) 621
EcoNI CCTNNNNNAGG 1 cut(s) 600
EcoO109I RGGNCCY 1 cut(s) 569
EcoRII CCWGG 2 cut(s) 700, 721
EcoT14I CCWWGG 3 cut(s) 608, 800, 1014
ErhI CCWWGG 3 cut(s) 608, 800, 1014
FaeI CATG 6 cut(s) 372, 419, 594, 736, 937, 1018
FaqI GGGAC 1 cut(s) 498
FatI CATG 6 cut(s) 368, 415, 590, 732, 933, 1014
FbaI TGATCA 1 cut(s) 651
Fnu4HI GCNGC 8 cut(s) 63, 437, 495, 498, 501, 668, 671, 1038
FokI GGATG 4 cut(s) 35, 286, 503, 1031
Fsp4HI GCNGC 8 cut(s) 63, 437, 495, 498, 501, 668, 671, 1038
FspBI CTAG 5 cut(s) 510, 746, 801, 833, 974
GlaI GCGC 2 cut(s) 156, 348
GluI GCNGC 8 cut(s) 63, 437, 495, 498, 501, 668, 671, 1038
GsuI CTGGAG 2 cut(s) 723, 962
HaeIII GGCC 6 cut(s) 105, 490, 595, 613, 663, 1013
HapII CCGG 7 cut(s) 35, 102, 111, 178, 220, 759, 848
HhaI GCGC 2 cut(s) 157, 349
Hin1II CATG 6 cut(s) 372, 419, 594, 736, 937, 1018
Hin6I GCGC 2 cut(s) 155, 347
HinP1I GCGC 2 cut(s) 155, 347
HinfI GANTC 2 cut(s) 8, 977
HpaII CCGG 7 cut(s) 35, 102, 111, 178, 220, 759, 848
HphI GGTGA 4 cut(s) 265, 884, 937, 972
Hpy166II GTNNAC 2 cut(s) 444, 545
Hpy188I TCNGA 4 cut(s) 56, 167, 327, 426
Hpy188III TCNNGA 3 cut(s) 130, 320, 941
Hpy8I GTNNAC 2 cut(s) 444, 545
HpyAV CCTTC 5 cut(s) 61, 596, 852, 901, 1024
HpyCH4III ACNGT 8 cut(s) 163, 197, 235, 387, 410, 552, 817, 1053
HpyCH4V TGCA 2 cut(s) 439, 1007
HpyF10VI GCNNNNNNNGC 8 cut(s) 102, 500, 592, 664, 676, 995, 1004, 1034
HpyF3I CTNAG 2 cut(s) 380, 921
Hsp92II CATG 6 cut(s) 372, 419, 594, 736, 937, 1018
HspAI GCGC 2 cut(s) 155, 347
Ksp22I TGATCA 1 cut(s) 651
Kzo9I GATC 4 cut(s) 126, 322, 426, 651
LmnI GCTCC 3 cut(s) 70, 703, 754
Lsp1109I GCAGC 6 cut(s) 74, 423, 481, 484, 679, 1024
LweI GCATC 3 cut(s) 13, 533, 618
MabI ACCWGGT 1 cut(s) 721
MaeI CTAG 5 cut(s) 510, 746, 801, 833, 974
MaeIII GTNAC 5 cut(s) 169, 197, 761, 925, 978
MalI GATC 4 cut(s) 128, 324, 428, 653
MboI GATC 4 cut(s) 126, 322, 426, 651
MboII GAAGA 6 cut(s) 223, 268, 293, 528, 707, 863
MhlI GDGCHC 1 cut(s) 472
MluCI AATT 4 cut(s) 339, 740, 878, 1002
MlyI GAGTC 1 cut(s) 986
MmeI TCCRAC 1 cut(s) 258
MroXI GAANNNNTTC 3 cut(s) 291, 315, 882
MseI TTAA 2 cut(s) 563, 992
MspA1I CMGCKG 1 cut(s) 494
MspI CCGG 7 cut(s) 35, 102, 111, 178, 220, 759, 848
MspR9I CCNGG 4 cut(s) 102, 702, 723, 759
Mva1269I GAATGC 1 cut(s) 844
MvaI CCWGG 2 cut(s) 702, 723
MvnI CGCG 1 cut(s) 157
MwoI GCNNNNNNNGC 8 cut(s) 102, 500, 592, 664, 676, 995, 1004, 1034
NciI CCSGG 2 cut(s) 102, 759
NcoI CCATGG 1 cut(s) 1014
NdeII GATC 4 cut(s) 126, 322, 426, 651
NlaIII CATG 6 cut(s) 372, 419, 594, 736, 937, 1018
NlaIV GGNNCC 2 cut(s) 45, 218
NmuCI GTSAC 2 cut(s) 925, 978
NspI RCATGY 2 cut(s) 736, 937
PaeI GCATGC 1 cut(s) 937
PcsI WCGNNNNNNNCGW 1 cut(s) 135
PctI GAATGC 1 cut(s) 844
PdmI GAANNNNTTC 3 cut(s) 291, 315, 882
PfeI GAWTC 1 cut(s) 8
Pfl23II CGTACG 2 cut(s) 139, 192
PflMI CCANNNNNTGG 2 cut(s) 638, 725
PfoI TCCNGGA 1 cut(s) 700
PinAI ACCGGT 1 cut(s) 219
PkrI GCNGC 8 cut(s) 64, 438, 496, 499, 502, 669, 672, 1039
Ple19I CGATCG 1 cut(s) 129
PleI GAGTC 1 cut(s) 985
PpsI GAGTC 1 cut(s) 985
PpuMI RGGWCCY 1 cut(s) 569
Psp5II RGGWCCY 1 cut(s) 569
Psp6I CCWGG 2 cut(s) 700, 721
PspGI CCWGG 2 cut(s) 700, 721
PspLI CGTACG 2 cut(s) 139, 192
PspN4I GGNNCC 2 cut(s) 45, 218
PspPI GGNCC 4 cut(s) 569, 605, 612, 644
PspPPI RGGWCCY 1 cut(s) 569
PstI CTGCAG 1 cut(s) 441
PstNI CAGNNNCTG 1 cut(s) 497
PvuI CGATCG 1 cut(s) 129
PvuII CAGCTG 1 cut(s) 494
RsaI GTAC 5 cut(s) 141, 194, 224, 365, 443
RsaNI GTAC 5 cut(s) 140, 193, 223, 364, 442
SaqAI TTAA 2 cut(s) 563, 992
SatI GCNGC 8 cut(s) 63, 437, 495, 498, 501, 668, 671, 1038
Sau3AI GATC 4 cut(s) 126, 322, 426, 651
Sau96I GGNCC 4 cut(s) 569, 605, 612, 644
ScaI AGTACT 1 cut(s) 365
SchI GAGTC 1 cut(s) 986
ScrFI CCNGG 4 cut(s) 102, 702, 723, 759
SduI GDGCHC 1 cut(s) 472
SexAI ACCWGGT 1 cut(s) 721
SfaNI GCATC 3 cut(s) 13, 533, 618
SfcI CTRYAG 2 cut(s) 437, 813
SinI GGWCC 3 cut(s) 569, 605, 644
SphI GCATGC 1 cut(s) 937
Sse9I AATT 4 cut(s) 339, 740, 878, 1002
SsiI CCGC 4 cut(s) 248, 501, 671, 773
SspI AATATT 1 cut(s) 314
SspMI CTAG 5 cut(s) 510, 746, 801, 833, 974
StyD4I CCNGG 4 cut(s) 100, 700, 721, 757
StyI CCWWGG 3 cut(s) 608, 800, 1014
TaaI ACNGT 8 cut(s) 163, 197, 235, 387, 410, 552, 817, 1053
TaqI TCGA 5 cut(s) 129, 429, 485, 558, 626
TasI AATT 4 cut(s) 339, 740, 878, 1002
TatI WGTACW 2 cut(s) 363, 441
TauI GCSGC 2 cut(s) 503, 673
TfiI GAWTC 1 cut(s) 8
Tru1I TTAA 2 cut(s) 563, 992
Tru9I TTAA 2 cut(s) 563, 992
TscAI CASTG 1 cut(s) 681
TseFI GTSAC 2 cut(s) 925, 978
TseI GCWGC 6 cut(s) 62, 436, 494, 497, 667, 1037
Tsp45I GTSAC 2 cut(s) 925, 978
TspDTI ATGAA 3 cut(s) 374, 410, 419
TspGWI ACGGA 1 cut(s) 35
TspRI CASTG 1 cut(s) 681
Van91I CCANNNNNTGG 2 cut(s) 638, 725
VpaK11BI GGWCC 3 cut(s) 569, 605, 644
XagI CCTNNNNNAGG 1 cut(s) 600
XceI RCATGY 2 cut(s) 736, 937
XcmI CCANNNNNNNNNTGG 1 cut(s) 1021
XmaJI CCTAGG 1 cut(s) 800
XmnI GAANNNNTTC 3 cut(s) 291, 315, 882
XspI CTAG 5 cut(s) 510, 746, 801, 833, 974
ZrmI AGTACT 1 cut(s) 365
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.