Rmu_ssc0000355.1_g000010

RNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000355.1
OG0016143
Physical Location & Seq
Reverse (-)
33604 .. 36020
2417 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000355.1_g000010.1.cds

Sequence Viewer

Length: 1014 bp
atggcagattccaaatcaacagatgcgttccctcccggtttccggttccacccttcggaacagaagctcctctcctactatctctcaaacaagaaagccaacccggccatgcccggtggctacaatacgatcagagagctgtcagacttacgagggcgcgaaccgtccgagttacagaactggagttgctattcgtacggttacaaagggaggaagaggcactggtacttttatacggctggggtttcggcggaggagaagaataccaagcagggatgttggaagaggaaaggtaaggttagggacgtgttcagcctccaaggggttgtgttgggcgccaggactagctttgtctattactacgggtcgcccgacgcagcctcaccgactgcttgggtactctatcagtatgctctggctaatcatgtggaggcacgagtttcacaatcgaggccagctgctgccgctactcctagtcccatcgaagcatctgttccaccttcgagtttactgcagtttttcgatttaacaggacctttgctgccgtcatgtcctgctcaaggaccaaggcccagaggtgcttcgatgccatactatggtggtccaatgatcaggcaaggccagcagctgccagtgcgaccaccccataacattgctccaggagtttatcatcttccacctggtggcaacatgccagaattactagctccacttcccggttactttctaccgcatgttcctcctgttcagtctttgcctaggtctgtgcctacagttttgaccacagccctagtgaatgccacaccggaagagagaaggaatatgcttggtgaggaattgtttcctctcgttgaaatgtgggagaaggacaaggcagctaaggtgacaggaatgcttctggagagggacaatcctgagatattacatttgctagagtcaccagaggctttaagggcaaaaattgcagaggccatggatgtcttagcaaaggtagctgccgatgggaaacagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko03015 ko03018 map03013 map03015 map03018
Pfam Domains
Protein Families
PABP

Protein Analysis

337

Amino Acids

37.16

Weight (kDa)

9.15

Isoelectric Point (pI)

65.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016143)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G19350
fragaria_vesca FvH4_2g34070
rosa_chinensis RchiOBHm_Chr6g0308281
rosa_laevigata RLG00000010651
rosa_multiflora Rmu_sc0005523.1_g000005 Rmu_sc0013917.1_g000002 Rmu_ssc0000355.1_g000010 Rmu_ssc0000355.1_g000012
rosa_roxburghii Rroxscaffold_7G00160290
rosa_samantha Rh6AG474800 Rh6BG485400 Rh6CG490500 Rh6DG476900 Rh6DG477100
rosa_wichuraiana Rw6G041410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 335
AccB7I CCANNNNNTGG 2 cut(s) 596, 683
AccII CGCG 1 cut(s) 159
AciI CCGC 3 cut(s) 251, 465, 731
AcoI YGGCCR 1 cut(s) 105
AcyI GRCGYC 1 cut(s) 336
AdeI CACNNNGTG 1 cut(s) 683
AfaI GTAC 3 cut(s) 197, 227, 399
AfiI CCNNNNNNNGG 7 cut(s) 42, 55, 322, 560, 596, 683, 716
AflIII ACRYGT 1 cut(s) 306
AgsI TTSAA 1 cut(s) 854
AjiI CACGTC 1 cut(s) 307
AjnI CCWGG 3 cut(s) 338, 658, 679
AloI GAACNNNNNNTCC 2 cut(s) 51, 83
AluBI AGCT 8 cut(s) 67, 139, 348, 458, 628, 707, 878, 995
AluI AGCT 8 cut(s) 67, 139, 348, 458, 628, 707, 878, 995
AlwNI CAGNNNCTG 2 cut(s) 461, 628
AoxI GGCC 5 cut(s) 105, 452, 569, 619, 969
ApeKI GCWGC 8 cut(s) 377, 458, 461, 541, 625, 628, 875, 995
Asp700I GAANNNNTTC 1 cut(s) 840
AspA2I CCTAGG 1 cut(s) 758
AspLEI GCGC 2 cut(s) 159, 338
AspS9I GGNCC 4 cut(s) 533, 563, 570, 602
AsuC2I CCSGG 4 cut(s) 36, 104, 114, 717
AsuHPI GGTGA 4 cut(s) 375, 842, 895, 930
AvaII GGWCC 3 cut(s) 533, 563, 602
AvrII CCTAGG 1 cut(s) 758
BanI GGYRCC 1 cut(s) 335
BauI CACGAG 1 cut(s) 435
BbvI GCAGC 8 cut(s) 389, 445, 448, 528, 615, 637, 887, 982
BccI CCATC 2 cut(s) 488, 995
BceAI ACGGC 2 cut(s) 252, 529
BcgI CGANNNNNNTGC 2 cut(s) 493, 527
BciT130I CCWGG 3 cut(s) 340, 660, 681
BclI TGATCA 1 cut(s) 609
BcnI CCSGG 4 cut(s) 36, 104, 114, 717
BfaI CTAG 6 cut(s) 345, 474, 704, 759, 791, 932
BfmI CTRYAG 2 cut(s) 512, 771
BfoI RGCGCY 1 cut(s) 339
BglI GCCNNNNNGGC 1 cut(s) 104
BisI GCNGC 9 cut(s) 378, 459, 462, 465, 542, 626, 629, 876, 996
BlnI CCTAGG 1 cut(s) 758
BlsI GCNGC 9 cut(s) 379, 460, 463, 466, 543, 627, 630, 877, 997
Bme1390I CCNGG 7 cut(s) 36, 104, 114, 340, 660, 681, 717
Bme18I GGWCC 3 cut(s) 533, 563, 602
BmgBI CACGTC 1 cut(s) 307
BmgT120I GGNCC 4 cut(s) 533, 563, 570, 602
BmiI GGNNCC 2 cut(s) 47, 337
BmrFI CCNGG 7 cut(s) 36, 104, 114, 340, 660, 681, 717
BmsI GCATC 3 cut(s) 13, 497, 576
BpmI CTGGAG 3 cut(s) 202, 642, 920
Bpu10I CCTNAGC 1 cut(s) 879
BpuEI CTTGAG 1 cut(s) 543
BpuMI CCSGG 4 cut(s) 36, 104, 114, 717
BsaHI GRCGYC 1 cut(s) 336
BsaJI CCNNGG 4 cut(s) 319, 566, 758, 972
BsaWI WCCGGW 2 cut(s) 42, 805
BsaXI ACNNNNNCTCC 2 cut(s) 51, 81
Bsc4I CCNNNNNNNGG 7 cut(s) 42, 55, 322, 560, 596, 683, 716
Bse1I ACTGG 3 cut(s) 185, 227, 632
Bse3DI GCAATG 1 cut(s) 651
BseBI CCWGG 3 cut(s) 340, 660, 681
BseDI CCNNGG 4 cut(s) 319, 566, 758, 972
BseGI GGATG 2 cut(s) 281, 982
BseLI CCNNNNNNNGG 7 cut(s) 42, 55, 322, 560, 596, 683, 716
BseMI GCAATG 1 cut(s) 651
BseMII CTCAG 1 cut(s) 906
BseNI ACTGG 3 cut(s) 185, 227, 632
BseRI GAGGAG 2 cut(s) 59, 269
BseXI GCAGC 8 cut(s) 389, 445, 448, 528, 615, 637, 887, 982
BseYI CCCAGC 1 cut(s) 239
Bsh1236I CGCG 1 cut(s) 159
BshFI GGCC 5 cut(s) 107, 454, 571, 621, 971
BshNI GGYRCC 1 cut(s) 335
BsiSI CCGG 6 cut(s) 36, 43, 104, 114, 717, 806
BsiWI CGTACG 1 cut(s) 195
BslFI GGGAC 3 cut(s) 317, 462, 920
BslI CCNNNNNNNGG 7 cut(s) 42, 55, 322, 560, 596, 683, 716
BsmFI GGGAC 3 cut(s) 317, 462, 920
BsmI GAATGC 2 cut(s) 802, 897
BsnI GGCC 5 cut(s) 107, 454, 571, 621, 971
Bsp143I GATC 2 cut(s) 129, 609
Bsp19I CCATGG 1 cut(s) 972
BspACI CCGC 3 cut(s) 251, 465, 731
BspANI GGCC 5 cut(s) 107, 454, 571, 621, 971
BspCNI CTCAG 1 cut(s) 907
BspFNI CGCG 1 cut(s) 159
BspLI GGNNCC 2 cut(s) 47, 337
BspMAI CTGCAG 1 cut(s) 516
BspT107I GGYRCC 1 cut(s) 335
BsrDI GCAATG 1 cut(s) 651
BsrI ACTGG 3 cut(s) 185, 227, 632
BssECI CCNNGG 4 cut(s) 319, 566, 758, 972
BssMI GATC 2 cut(s) 129, 609
BssNI GRCGYC 1 cut(s) 336
BssSI CACGAG 1 cut(s) 435
BssT1I CCWWGG 4 cut(s) 319, 566, 758, 972
Bst2BI CACGAG 1 cut(s) 435
Bst2UI CCWGG 3 cut(s) 340, 660, 681
Bst4CI ACNGT 4 cut(s) 165, 200, 775, 1011
Bst6I CTCTTC 3 cut(s) 209, 278, 804
BstACI GRCGYC 1 cut(s) 336
BstAPI GCANNNNNTGC 1 cut(s) 962
BstC8I GCNNGC 2 cut(s) 456, 623
BstDEI CTNAG 3 cut(s) 879, 915, 982
BstDSI CCRYGG 1 cut(s) 972
BstENI CCTNNNNNAGG 1 cut(s) 558
BstF5I GGATG 2 cut(s) 281, 982
BstFNI CGCG 1 cut(s) 159
BstH2I RGCGCY 1 cut(s) 339
BstHHI GCGC 2 cut(s) 159, 338
BstKTI GATC 2 cut(s) 132, 612
BstMBI GATC 2 cut(s) 129, 609
BstMWI GCNNNNNNNGC 7 cut(s) 104, 464, 622, 634, 953, 962, 992
BstNI CCWGG 3 cut(s) 340, 660, 681
BstNSI RCATGY 2 cut(s) 694, 737
BstSCI CCNGG 7 cut(s) 34, 102, 112, 338, 658, 679, 715
BstSFI CTRYAG 2 cut(s) 512, 771
BstUI CGCG 1 cut(s) 159
BstV1I GCAGC 8 cut(s) 389, 445, 448, 528, 615, 637, 887, 982
BsuRI GGCC 5 cut(s) 107, 454, 571, 621, 971
BtgI CCRYGG 1 cut(s) 972
BtrI CACGTC 1 cut(s) 307
BtsCI GGATG 2 cut(s) 281, 982
BtsIMutI CAGTG 2 cut(s) 220, 639
Cac8I GCNNGC 2 cut(s) 456, 623
CaiI CAGNNNCTG 2 cut(s) 461, 628
CfoI GCGC 2 cut(s) 159, 338
Cfr13I GGNCC 4 cut(s) 533, 563, 570, 602
CseI GACGC 1 cut(s) 383
CsiI ACCWGGT 1 cut(s) 679
Csp6I GTAC 3 cut(s) 196, 226, 398
CviAII CATG 6 cut(s) 109, 425, 549, 691, 734, 973
CviQI GTAC 3 cut(s) 196, 226, 398
DdeI CTNAG 3 cut(s) 879, 915, 982
DinI GGCGCC 1 cut(s) 337
DpnI GATC 2 cut(s) 131, 611
DpnII GATC 2 cut(s) 129, 609
DraIII CACNNNGTG 1 cut(s) 683
EaeI YGGCCR 1 cut(s) 105
Eam1104I CTCTTC 3 cut(s) 209, 278, 804
EarI CTCTTC 3 cut(s) 209, 278, 804
EciI GGCGGA 1 cut(s) 266
Eco130I CCWWGG 4 cut(s) 319, 566, 758, 972
Eco47I GGWCC 3 cut(s) 533, 563, 602
EcoNI CCTNNNNNAGG 1 cut(s) 558
EcoO109I RGGNCCY 1 cut(s) 533
EcoRII CCWGG 3 cut(s) 338, 658, 679
EcoT14I CCWWGG 4 cut(s) 319, 566, 758, 972
EgeI GGCGCC 1 cut(s) 337
EheI GGCGCC 1 cut(s) 337
ErhI CCWWGG 4 cut(s) 319, 566, 758, 972
FaeI CATG 6 cut(s) 112, 428, 552, 694, 737, 976
FaqI GGGAC 3 cut(s) 317, 462, 920
FatI CATG 6 cut(s) 108, 424, 548, 690, 733, 972
FbaI TGATCA 1 cut(s) 609
Fnu4HI GCNGC 9 cut(s) 378, 459, 462, 465, 542, 626, 629, 876, 996
FokI GGATG 2 cut(s) 288, 989
Fsp4HI GCNGC 9 cut(s) 378, 459, 462, 465, 542, 626, 629, 876, 996
FspBI CTAG 6 cut(s) 345, 474, 704, 759, 791, 932
GlaI GCGC 2 cut(s) 158, 337
GluI GCNGC 9 cut(s) 378, 459, 462, 465, 542, 626, 629, 876, 996
GsaI CCCAGC 1 cut(s) 243
GsuI CTGGAG 3 cut(s) 202, 642, 920
HaeII RGCGCY 1 cut(s) 339
HaeIII GGCC 5 cut(s) 107, 454, 571, 621, 971
HapII CCGG 6 cut(s) 36, 43, 104, 114, 717, 806
HgaI GACGC 1 cut(s) 383
HhaI GCGC 2 cut(s) 159, 338
Hin1I GRCGYC 1 cut(s) 336
Hin1II CATG 6 cut(s) 112, 428, 552, 694, 737, 976
Hin6I GCGC 2 cut(s) 157, 336
HinP1I GCGC 2 cut(s) 157, 336
HinfI GANTC 2 cut(s) 8, 935
HpaII CCGG 6 cut(s) 36, 43, 104, 114, 717, 806
HphI GGTGA 4 cut(s) 375, 842, 895, 930
Hpy166II GTNNAC 1 cut(s) 509
Hpy188I TCNGA 4 cut(s) 58, 134, 145, 169
Hpy188III TCNNGA 2 cut(s) 899, 914
Hpy8I GTNNAC 1 cut(s) 509
Hpy99I CGWCG 1 cut(s) 377
HpyAV CCTTC 4 cut(s) 63, 510, 810, 859
HpyCH4III ACNGT 4 cut(s) 165, 200, 775, 1011
HpyCH4IV ACGT 1 cut(s) 306
HpyCH4V TGCA 2 cut(s) 514, 965
HpyF10VI GCNNNNNNNGC 7 cut(s) 104, 464, 622, 634, 953, 962, 992
HpyF3I CTNAG 3 cut(s) 879, 915, 982
HpySE526I ACGT 1 cut(s) 306
Hsp92I GRCGYC 1 cut(s) 336
Hsp92II CATG 6 cut(s) 112, 428, 552, 694, 737, 976
HspAI GCGC 2 cut(s) 157, 336
KasI GGCGCC 1 cut(s) 335
Ksp22I TGATCA 1 cut(s) 609
Kzo9I GATC 2 cut(s) 129, 609
LmnI GCTCC 3 cut(s) 72, 661, 712
Lsp1109I GCAGC 8 cut(s) 389, 445, 448, 528, 615, 637, 887, 982
LweI GCATC 3 cut(s) 13, 497, 576
MabI ACCWGGT 1 cut(s) 679
MaeI CTAG 6 cut(s) 345, 474, 704, 759, 791, 932
MaeII ACGT 1 cut(s) 306
MaeIII GTNAC 5 cut(s) 171, 200, 719, 883, 936
MalI GATC 2 cut(s) 131, 611
MboI GATC 2 cut(s) 129, 609
MboII GAAGA 5 cut(s) 226, 271, 295, 665, 821
MluCI AATT 3 cut(s) 698, 836, 960
Mly113I GGCGCC 1 cut(s) 336
MlyI GAGTC 1 cut(s) 944
MmeI TCCRAC 1 cut(s) 260
MroXI GAANNNNTTC 1 cut(s) 840
MseI TTAA 2 cut(s) 527, 950
MspA1I CMGCKG 2 cut(s) 458, 628
MspI CCGG 6 cut(s) 36, 43, 104, 114, 717, 806
MspR9I CCNGG 7 cut(s) 36, 104, 114, 340, 660, 681, 717
Mva1269I GAATGC 2 cut(s) 802, 897
MvaI CCWGG 3 cut(s) 340, 660, 681
MvnI CGCG 1 cut(s) 159
MwoI GCNNNNNNNGC 7 cut(s) 104, 464, 622, 634, 953, 962, 992
NarI GGCGCC 1 cut(s) 336
NciI CCSGG 4 cut(s) 36, 104, 114, 717
NcoI CCATGG 1 cut(s) 972
NdeII GATC 2 cut(s) 129, 609
NlaIII CATG 6 cut(s) 112, 428, 552, 694, 737, 976
NlaIV GGNNCC 2 cut(s) 47, 337
NmuCI GTSAC 2 cut(s) 883, 936
NspI RCATGY 2 cut(s) 694, 737
PcsI WCGNNNNNNNCGW 1 cut(s) 369
PctI GAATGC 2 cut(s) 802, 897
PdmI GAANNNNTTC 1 cut(s) 840
PfeI GAWTC 1 cut(s) 8
Pfl23II CGTACG 1 cut(s) 195
PflMI CCANNNNNTGG 2 cut(s) 596, 683
PfoI TCCNGGA 1 cut(s) 658
PkrI GCNGC 9 cut(s) 379, 460, 463, 466, 543, 627, 630, 877, 997
PleI GAGTC 1 cut(s) 943
PluTI GGCGCC 1 cut(s) 339
PpsI GAGTC 1 cut(s) 943
PpuMI RGGWCCY 1 cut(s) 533
Psp5II RGGWCCY 1 cut(s) 533
Psp6I CCWGG 3 cut(s) 338, 658, 679
PspFI CCCAGC 1 cut(s) 239
PspGI CCWGG 3 cut(s) 338, 658, 679
PspLI CGTACG 1 cut(s) 195
PspN4I GGNNCC 2 cut(s) 47, 337
PspPI GGNCC 4 cut(s) 533, 563, 570, 602
PspPPI RGGWCCY 1 cut(s) 533
PstI CTGCAG 1 cut(s) 516
PstNI CAGNNNCTG 2 cut(s) 461, 628
PvuII CAGCTG 2 cut(s) 458, 628
RsaI GTAC 3 cut(s) 197, 227, 399
RsaNI GTAC 3 cut(s) 196, 226, 398
SaqAI TTAA 2 cut(s) 527, 950
SatI GCNGC 9 cut(s) 378, 459, 462, 465, 542, 626, 629, 876, 996
Sau3AI GATC 2 cut(s) 129, 609
Sau96I GGNCC 4 cut(s) 533, 563, 570, 602
SchI GAGTC 1 cut(s) 944
ScrFI CCNGG 7 cut(s) 36, 104, 114, 340, 660, 681, 717
SexAI ACCWGGT 1 cut(s) 679
SfaNI GCATC 3 cut(s) 13, 497, 576
SfcI CTRYAG 2 cut(s) 512, 771
SfoI GGCGCC 1 cut(s) 337
SinI GGWCC 3 cut(s) 533, 563, 602
SmlI CTYRAG 1 cut(s) 558
SmoI CTYRAG 1 cut(s) 558
Sse9I AATT 3 cut(s) 698, 836, 960
SsiI CCGC 3 cut(s) 251, 465, 731
SspDI GGCGCC 1 cut(s) 335
SspMI CTAG 6 cut(s) 345, 474, 704, 759, 791, 932
StyD4I CCNGG 7 cut(s) 34, 102, 112, 338, 658, 679, 715
StyI CCWWGG 4 cut(s) 319, 566, 758, 972
TaaI ACNGT 4 cut(s) 165, 200, 775, 1011
TaiI ACGT 1 cut(s) 309
TaqI TCGA 5 cut(s) 449, 483, 503, 522, 584
TasI AATT 3 cut(s) 698, 836, 960
TauI GCSGC 1 cut(s) 467
TfiI GAWTC 1 cut(s) 8
Tru1I TTAA 2 cut(s) 527, 950
Tru9I TTAA 2 cut(s) 527, 950
TscAI CASTG 2 cut(s) 227, 639
TseFI GTSAC 2 cut(s) 883, 936
TseI GCWGC 8 cut(s) 377, 458, 461, 541, 625, 628, 875, 995
Tsp45I GTSAC 2 cut(s) 883, 936
TspRI CASTG 2 cut(s) 227, 639
Van91I CCANNNNNTGG 2 cut(s) 596, 683
VpaK11BI GGWCC 3 cut(s) 533, 563, 602
XagI CCTNNNNNAGG 1 cut(s) 558
XceI RCATGY 2 cut(s) 694, 737
XmaJI CCTAGG 1 cut(s) 758
XmnI GAANNNNTTC 1 cut(s) 840
XspI CTAG 6 cut(s) 345, 474, 704, 759, 791, 932
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.