Rh6AG474800

RNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0016143
Physical Location & Seq
Reverse (-)
65616646 .. 65619062
2417 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG474800.1

Sequence Viewer

Length: 1128 bp
ATGGCAGATTCCAAATCAACAGATGCGTTCCCTCCCGGTTTCCGGTTCCACCCTTCGGAACAGCAGCTCCTCTCCTACTATCTCTCAAACAAGAAAGCCAACCCGGCCATACCCGGCGGCTACAATACGATCAGAGAGCTGTCAGACTTACGAGGGCGCGACCCGTCCGAGTTACAGAACTGGAGTTGCTATTCGTACGGTTACAAAGGGAGGAAGAGGCACTGGTACTTTTATACGGCTGGGGTTTCGGCGGAGGAGAAGAATACCAAGCAGGGATGTTGGAAGAGGAAAGGTAAGGTTAGGGACGTGTTCAGCCGCCAAGGGGTTGTTTTGGGCACCAGGACTAGCTTTGTCTATTACGACGGGTCGCCCGACACAGCCTCACCGACTGCTTGGGTACTCTATCAGTATGCTCTGGCTAATCATGTCGAGGGTTCTTTCGTTCTATGCCGAATATTTTCAAGATCAGATAGTGATTTCAATTCCTGCGCTAATAATGATGAACTACTCATGCCCAAGCCTGAGACTGTTTCTACAACAAGTAATGAACAGGCACGAGTTTCACAATCGAGGCCAGCTGCTGCCGCTACTCCTAGTCCCATCCAAGCATCTGTTCCACCTTCGAGTTTACAACAGTTTTTCGATTTAACAGGACCTTTGGTCATACTGCCGTCATGGCCTGCTCAAGGACCAAGGCCCAGAGGTGCTTCGATGCCATACTATGGTGGTCCAATGATCAGGCAAGGCCAGCAGCCGCCAGTGCCACCACCCCATAACATAGCTCCTGGAGTTTATCATCTTCCACCTGGTGGCAACATGCCAGAATTACTAGCTCCACTTCCCGGTTACTTTCTACCGCATGTTCCTCCTGTTCAGTCTTTGCCTACAGTTTTGACCACAGCCCTAGTGAATGCCACATCGGAAGAGAGAAGGAATATGCTTGGTGAGGAATTGTTTCCTCTCGTTGAAATGTGGGAGAAGGACAAGGCAGCTAAGGTGACAGGCATGCTTCTGGAGATGGACAATCCTGAGATATTACATTTGCTAGAGTCACCAGAGGCTTTACGGGCAAAAATTGCAGAGGCCATGGATGTCTTAGCGAAGGTACGTGCCGATGGGAAACAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko03015 ko03018 map03013 map03015 map03018
Pfam Domains
Protein Families
PABP

Protein Analysis

375

Amino Acids

41.45

Weight (kDa)

8.22

Isoelectric Point (pI)

61.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 11 - 139 1.1e-20 No apical meristem (NAM) protein
MLLE PF00658 302 - 366 1.5e-26 MLLE domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016143)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G19350
fragaria_vesca FvH4_2g34070
rosa_chinensis RchiOBHm_Chr6g0308281
rosa_laevigata RLG00000010651
rosa_multiflora Rmu_sc0005523.1_g000005 Rmu_sc0013917.1_g000002 Rmu_ssc0000355.1_g000010 Rmu_ssc0000355.1_g000012
rosa_roxburghii Rroxscaffold_7G00160290
rosa_samantha Rh6AG474800 Rh6BG485400 Rh6CG490500 Rh6DG476900 Rh6DG477100
rosa_wichuraiana Rw6G041410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 335
AccB7I CCANNNNNTGG 2 cut(s) 722, 809
AccII CGCG 1 cut(s) 159
AciI CCGC 6 cut(s) 117, 251, 316, 585, 755, 857
AcoI YGGCCR 1 cut(s) 105
AdeI CACNNNGTG 1 cut(s) 809
AfaI GTAC 4 cut(s) 197, 227, 399, 1107
AfiI CCNNNNNNNGG 7 cut(s) 42, 55, 322, 686, 722, 809, 842
AflIII ACRYGT 1 cut(s) 306
AgsI TTSAA 3 cut(s) 462, 481, 968
AhdI GACNNNNNGTC 1 cut(s) 659
AjiI CACGTC 1 cut(s) 307
AjnI CCWGG 3 cut(s) 338, 784, 805
AjuI GAANNNNNNNTTGG 2 cut(s) 597, 629
AloI GAACNNNNNNTCC 2 cut(s) 51, 83
AluBI AGCT 7 cut(s) 67, 139, 348, 578, 782, 833, 992
AluI AGCT 7 cut(s) 67, 139, 348, 578, 782, 833, 992
Alw26I GTCTC 1 cut(s) 518
AlwNI CAGNNNCTG 1 cut(s) 581
AoxI GGCC 6 cut(s) 105, 572, 677, 695, 745, 1083
ApeKI GCWGC 5 cut(s) 64, 578, 581, 751, 989
Asp700I GAANNNNTTC 2 cut(s) 457, 954
AspLEI GCGC 2 cut(s) 159, 491
AspS9I GGNCC 4 cut(s) 653, 689, 696, 728
AsuC2I CCSGG 4 cut(s) 36, 104, 114, 843
AsuHPI GGTGA 4 cut(s) 375, 956, 1009, 1044
AvaII GGWCC 3 cut(s) 653, 689, 728
BaeGI GKGCMC 1 cut(s) 338
BanI GGYRCC 1 cut(s) 335
BauI CACGAG 1 cut(s) 555
BbvI GCAGC 5 cut(s) 76, 565, 568, 763, 1001
BccI CCATC 3 cut(s) 608, 1012, 1109
BceAI ACGGC 2 cut(s) 252, 655
BciT130I CCWGG 3 cut(s) 340, 786, 807
BclI TGATCA 1 cut(s) 735
BcnI CCSGG 4 cut(s) 36, 104, 114, 843
BcoDI GTCTC 1 cut(s) 518
BfaI CTAG 5 cut(s) 345, 594, 830, 905, 1046
BfmI CTRYAG 1 cut(s) 885
BglI GCCNNNNNGGC 2 cut(s) 104, 676
BisI GCNGC 9 cut(s) 65, 118, 316, 579, 582, 585, 752, 755, 990
BlsI GCNGC 9 cut(s) 66, 119, 317, 580, 583, 586, 753, 756, 991
Bme1390I CCNGG 7 cut(s) 36, 104, 114, 340, 786, 807, 843
Bme18I GGWCC 3 cut(s) 653, 689, 728
BmeRI GACNNNNNGTC 1 cut(s) 659
BmgBI CACGTC 1 cut(s) 307
BmgT120I GGNCC 4 cut(s) 653, 689, 696, 728
BmiI GGNNCC 2 cut(s) 47, 337
BmrFI CCNGG 7 cut(s) 36, 104, 114, 340, 786, 807, 843
BmsI GCATC 3 cut(s) 13, 617, 702
BpmI CTGGAG 3 cut(s) 202, 807, 1034
Bpu10I CCTNAGC 1 cut(s) 993
BpuEI CTTGAG 1 cut(s) 669
BpuMI CCSGG 4 cut(s) 36, 104, 114, 843
BsaAI YACGTR 1 cut(s) 1109
BsaJI CCNNGG 3 cut(s) 319, 692, 1086
BsaWI WCCGGW 1 cut(s) 42
BsaXI ACNNNNNCTCC 2 cut(s) 51, 81
Bsc4I CCNNNNNNNGG 7 cut(s) 42, 55, 322, 686, 722, 809, 842
Bse1I ACTGG 3 cut(s) 185, 227, 758
BseBI CCWGG 3 cut(s) 340, 786, 807
BseDI CCNNGG 3 cut(s) 319, 692, 1086
BseGI GGATG 3 cut(s) 281, 600, 1096
BseLI CCNNNNNNNGG 7 cut(s) 42, 55, 322, 686, 722, 809, 842
BseMII CTCAG 2 cut(s) 513, 1020
BseNI ACTGG 3 cut(s) 185, 227, 758
BseRI GAGGAG 2 cut(s) 59, 269
BseSI GKGCMC 1 cut(s) 338
BseXI GCAGC 5 cut(s) 76, 565, 568, 763, 1001
BseYI CCCAGC 1 cut(s) 239
Bsh1236I CGCG 1 cut(s) 159
BshFI GGCC 6 cut(s) 107, 574, 679, 697, 747, 1085
BshNI GGYRCC 1 cut(s) 335
BsiSI CCGG 5 cut(s) 36, 43, 104, 114, 843
BsiWI CGTACG 1 cut(s) 195
BslFI GGGAC 2 cut(s) 317, 582
BslI CCNNNNNNNGG 7 cut(s) 42, 55, 322, 686, 722, 809, 842
BsmAI GTCTC 1 cut(s) 518
BsmFI GGGAC 2 cut(s) 317, 582
BsmI GAATGC 1 cut(s) 916
BsnI GGCC 6 cut(s) 107, 574, 679, 697, 747, 1085
Bsp1286I GDGCHC 1 cut(s) 338
Bsp143I GATC 3 cut(s) 129, 464, 735
Bsp19I CCATGG 1 cut(s) 1086
BspACI CCGC 6 cut(s) 117, 251, 316, 585, 755, 857
BspANI GGCC 6 cut(s) 107, 574, 679, 697, 747, 1085
BspCNI CTCAG 2 cut(s) 514, 1021
BspFNI CGCG 1 cut(s) 159
BspLI GGNNCC 2 cut(s) 47, 337
BspT107I GGYRCC 1 cut(s) 335
BsrI ACTGG 3 cut(s) 185, 227, 758
BssECI CCNNGG 3 cut(s) 319, 692, 1086
BssMI GATC 3 cut(s) 129, 464, 735
BssSI CACGAG 1 cut(s) 555
BssT1I CCWWGG 3 cut(s) 319, 692, 1086
Bst2BI CACGAG 1 cut(s) 555
Bst2UI CCWGG 3 cut(s) 340, 786, 807
Bst4CI ACNGT 5 cut(s) 200, 529, 636, 889, 1125
Bst6I CTCTTC 3 cut(s) 209, 278, 918
BstAPI GCANNNNNTGC 1 cut(s) 1076
BstBAI YACGTR 1 cut(s) 1109
BstC8I GCNNGC 4 cut(s) 576, 681, 749, 1007
BstDEI CTNAG 4 cut(s) 522, 993, 1029, 1096
BstDSI CCRYGG 1 cut(s) 1086
BstENI CCTNNNNNAGG 1 cut(s) 684
BstF5I GGATG 3 cut(s) 281, 600, 1096
BstFNI CGCG 1 cut(s) 159
BstHHI GCGC 2 cut(s) 159, 491
BstKTI GATC 3 cut(s) 132, 467, 738
BstMAI GTCTC 1 cut(s) 518
BstMBI GATC 3 cut(s) 129, 464, 735
BstMWI GCNNNNNNNGC 7 cut(s) 104, 584, 676, 748, 760, 1067, 1076
BstNI CCWGG 3 cut(s) 340, 786, 807
BstNSI RCATGY 3 cut(s) 820, 863, 1009
BstSCI CCNGG 7 cut(s) 34, 102, 112, 338, 784, 805, 841
BstSFI CTRYAG 1 cut(s) 885
BstSLI GKGCMC 1 cut(s) 338
BstUI CGCG 1 cut(s) 159
BstV1I GCAGC 5 cut(s) 76, 565, 568, 763, 1001
BsuRI GGCC 6 cut(s) 107, 574, 679, 697, 747, 1085
BtgI CCRYGG 1 cut(s) 1086
BtrI CACGTC 1 cut(s) 307
BtsCI GGATG 3 cut(s) 281, 600, 1096
BtsIMutI CAGTG 2 cut(s) 220, 765
Cac8I GCNNGC 4 cut(s) 576, 681, 749, 1007
CaiI CAGNNNCTG 1 cut(s) 581
CfoI GCGC 2 cut(s) 159, 491
Cfr13I GGNCC 4 cut(s) 653, 689, 696, 728
CsiI ACCWGGT 1 cut(s) 805
Csp6I GTAC 4 cut(s) 196, 226, 398, 1106
CviAII CATG 7 cut(s) 425, 511, 675, 817, 860, 1006, 1087
CviQI GTAC 4 cut(s) 196, 226, 398, 1106
DdeI CTNAG 4 cut(s) 522, 993, 1029, 1096
DpnI GATC 3 cut(s) 131, 466, 737
DpnII GATC 3 cut(s) 129, 464, 735
DraIII CACNNNGTG 1 cut(s) 809
DriI GACNNNNNGTC 1 cut(s) 659
EaeI YGGCCR 1 cut(s) 105
Eam1104I CTCTTC 3 cut(s) 209, 278, 918
Eam1105I GACNNNNNGTC 1 cut(s) 659
EarI CTCTTC 3 cut(s) 209, 278, 918
EciI GGCGGA 1 cut(s) 266
Eco130I CCWWGG 3 cut(s) 319, 692, 1086
Eco47I GGWCC 3 cut(s) 653, 689, 728
EcoNI CCTNNNNNAGG 1 cut(s) 684
EcoO109I RGGNCCY 1 cut(s) 653
EcoRII CCWGG 3 cut(s) 338, 784, 805
EcoT14I CCWWGG 3 cut(s) 319, 692, 1086
ErhI CCWWGG 3 cut(s) 319, 692, 1086
FaeI CATG 7 cut(s) 428, 514, 678, 820, 863, 1009, 1090
FaqI GGGAC 2 cut(s) 317, 582
FatI CATG 7 cut(s) 424, 510, 674, 816, 859, 1005, 1086
FbaI TGATCA 1 cut(s) 735
Fnu4HI GCNGC 9 cut(s) 65, 118, 316, 579, 582, 585, 752, 755, 990
FokI GGATG 3 cut(s) 288, 587, 1103
Fsp4HI GCNGC 9 cut(s) 65, 118, 316, 579, 582, 585, 752, 755, 990
FspBI CTAG 5 cut(s) 345, 594, 830, 905, 1046
GlaI GCGC 2 cut(s) 158, 490
GluI GCNGC 9 cut(s) 65, 118, 316, 579, 582, 585, 752, 755, 990
GsaI CCCAGC 1 cut(s) 243
GsuI CTGGAG 3 cut(s) 202, 807, 1034
HaeIII GGCC 6 cut(s) 107, 574, 679, 697, 747, 1085
HapII CCGG 5 cut(s) 36, 43, 104, 114, 843
HhaI GCGC 2 cut(s) 159, 491
Hin1II CATG 7 cut(s) 428, 514, 678, 820, 863, 1009, 1090
Hin6I GCGC 2 cut(s) 157, 489
HinP1I GCGC 2 cut(s) 157, 489
HinfI GANTC 2 cut(s) 8, 1049
HpaII CCGG 5 cut(s) 36, 43, 104, 114, 843
HphI GGTGA 4 cut(s) 375, 956, 1009, 1044
Hpy166II GTNNAC 1 cut(s) 629
Hpy188I TCNGA 6 cut(s) 58, 134, 145, 169, 469, 922
Hpy188III TCNNGA 3 cut(s) 462, 1013, 1028
Hpy8I GTNNAC 1 cut(s) 629
Hpy99I CGWCG 1 cut(s) 365
HpyAV CCTTC 5 cut(s) 63, 630, 924, 973, 1096
HpyCH4III ACNGT 5 cut(s) 200, 529, 636, 889, 1125
HpyCH4IV ACGT 2 cut(s) 306, 1108
HpyCH4V TGCA 1 cut(s) 1079
HpyF10VI GCNNNNNNNGC 7 cut(s) 104, 584, 676, 748, 760, 1067, 1076
HpyF3I CTNAG 4 cut(s) 522, 993, 1029, 1096
HpySE526I ACGT 2 cut(s) 306, 1108
Hsp92II CATG 7 cut(s) 428, 514, 678, 820, 863, 1009, 1090
HspAI GCGC 2 cut(s) 157, 489
Ksp22I TGATCA 1 cut(s) 735
Kzo9I GATC 3 cut(s) 129, 464, 735
LmnI GCTCC 3 cut(s) 72, 787, 838
Lsp1109I GCAGC 5 cut(s) 76, 565, 568, 763, 1001
LweI GCATC 3 cut(s) 13, 617, 702
MabI ACCWGGT 1 cut(s) 805
MaeI CTAG 5 cut(s) 345, 594, 830, 905, 1046
MaeII ACGT 2 cut(s) 306, 1108
MaeIII GTNAC 5 cut(s) 171, 200, 845, 997, 1050
MalI GATC 3 cut(s) 131, 466, 737
MboI GATC 3 cut(s) 129, 464, 735
MboII GAAGA 5 cut(s) 226, 271, 295, 791, 935
MhlI GDGCHC 1 cut(s) 338
MluCI AATT 4 cut(s) 481, 824, 950, 1074
MlyI GAGTC 1 cut(s) 1058
MmeI TCCRAC 1 cut(s) 260
MroXI GAANNNNTTC 2 cut(s) 457, 954
MseI TTAA 1 cut(s) 647
MspA1I CMGCKG 1 cut(s) 578
MspI CCGG 5 cut(s) 36, 43, 104, 114, 843
MspR9I CCNGG 7 cut(s) 36, 104, 114, 340, 786, 807, 843
Mva1269I GAATGC 1 cut(s) 916
MvaI CCWGG 3 cut(s) 340, 786, 807
MvnI CGCG 1 cut(s) 159
MwoI GCNNNNNNNGC 7 cut(s) 104, 584, 676, 748, 760, 1067, 1076
NciI CCSGG 4 cut(s) 36, 104, 114, 843
NcoI CCATGG 1 cut(s) 1086
NdeII GATC 3 cut(s) 129, 464, 735
NlaIII CATG 7 cut(s) 428, 514, 678, 820, 863, 1009, 1090
NlaIV GGNNCC 2 cut(s) 47, 337
NmuCI GTSAC 2 cut(s) 997, 1050
NspI RCATGY 3 cut(s) 820, 863, 1009
PaeI GCATGC 1 cut(s) 1009
PcsI WCGNNNNNNNCGW 1 cut(s) 369
PctI GAATGC 1 cut(s) 916
PdmI GAANNNNTTC 2 cut(s) 457, 954
PfeI GAWTC 1 cut(s) 8
Pfl23II CGTACG 1 cut(s) 195
PflMI CCANNNNNTGG 2 cut(s) 722, 809
PfoI TCCNGGA 1 cut(s) 784
PkrI GCNGC 9 cut(s) 66, 119, 317, 580, 583, 586, 753, 756, 991
PleI GAGTC 1 cut(s) 1057
PpsI GAGTC 1 cut(s) 1057
Ppu21I YACGTR 1 cut(s) 1109
PpuMI RGGWCCY 1 cut(s) 653
Psp5II RGGWCCY 1 cut(s) 653
Psp6I CCWGG 3 cut(s) 338, 784, 805
PspFI CCCAGC 1 cut(s) 239
PspGI CCWGG 3 cut(s) 338, 784, 805
PspLI CGTACG 1 cut(s) 195
PspN4I GGNNCC 2 cut(s) 47, 337
PspPI GGNCC 4 cut(s) 653, 689, 696, 728
PspPPI RGGWCCY 1 cut(s) 653
PstNI CAGNNNCTG 1 cut(s) 581
PvuII CAGCTG 1 cut(s) 578
RsaI GTAC 4 cut(s) 197, 227, 399, 1107
RsaNI GTAC 4 cut(s) 196, 226, 398, 1106
SaqAI TTAA 1 cut(s) 647
SatI GCNGC 9 cut(s) 65, 118, 316, 579, 582, 585, 752, 755, 990
Sau3AI GATC 3 cut(s) 129, 464, 735
Sau96I GGNCC 4 cut(s) 653, 689, 696, 728
SchI GAGTC 1 cut(s) 1058
ScrFI CCNGG 7 cut(s) 36, 104, 114, 340, 786, 807, 843
SduI GDGCHC 1 cut(s) 338
SexAI ACCWGGT 1 cut(s) 805
SfaNI GCATC 3 cut(s) 13, 617, 702
SfcI CTRYAG 1 cut(s) 885
SinI GGWCC 3 cut(s) 653, 689, 728
SmlI CTYRAG 1 cut(s) 684
SmoI CTYRAG 1 cut(s) 684
SphI GCATGC 1 cut(s) 1009
Sse9I AATT 4 cut(s) 481, 824, 950, 1074
SsiI CCGC 6 cut(s) 117, 251, 316, 585, 755, 857
SspI AATATT 1 cut(s) 456
SspMI CTAG 5 cut(s) 345, 594, 830, 905, 1046
StyD4I CCNGG 7 cut(s) 34, 102, 112, 338, 784, 805, 841
StyI CCWWGG 3 cut(s) 319, 692, 1086
TaaI ACNGT 5 cut(s) 200, 529, 636, 889, 1125
TaiI ACGT 2 cut(s) 309, 1111
TaqI TCGA 5 cut(s) 429, 569, 623, 642, 710
TasI AATT 4 cut(s) 481, 824, 950, 1074
TauI GCSGC 4 cut(s) 120, 318, 587, 757
TfiI GAWTC 1 cut(s) 8
Tru1I TTAA 1 cut(s) 647
Tru9I TTAA 1 cut(s) 647
TscAI CASTG 2 cut(s) 227, 765
TseFI GTSAC 2 cut(s) 997, 1050
TseI GCWGC 5 cut(s) 64, 578, 581, 751, 989
Tsp45I GTSAC 2 cut(s) 997, 1050
TspDTI ATGAA 2 cut(s) 516, 561
TspRI CASTG 2 cut(s) 227, 765
Van91I CCANNNNNTGG 2 cut(s) 722, 809
VpaK11BI GGWCC 3 cut(s) 653, 689, 728
XagI CCTNNNNNAGG 1 cut(s) 684
XceI RCATGY 3 cut(s) 820, 863, 1009
XmnI GAANNNNTTC 2 cut(s) 457, 954
XspI CTAG 5 cut(s) 345, 594, 830, 905, 1046
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.