RNA binding
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G19350 |
| fragaria_vesca | FvH4_2g34070 |
| rosa_chinensis | RchiOBHm_Chr6g0308281 |
| rosa_laevigata | RLG00000010651 |
| rosa_multiflora | Rmu_sc0005523.1_g000005 Rmu_sc0013917.1_g000002 Rmu_ssc0000355.1_g000010 Rmu_ssc0000355.1_g000012 |
| rosa_roxburghii | Rroxscaffold_7G00160290 |
| rosa_samantha | Rh6AG474800 Rh6BG485400 Rh6CG490500 Rh6DG476900 Rh6DG477100 |
| rosa_wichuraiana | Rw6G041410 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 294 |
| AccB1I | GGYRCC | 3 cut(s) | 138, 320, 715 |
| AccI | GTMKAC | 2 cut(s) | 339, 515 |
| AciI | CCGC | 2 cut(s) | 301, 563 |
| AclWI | GGATC | 2 cut(s) | 122, 358 |
| AcyI | GRCGYC | 3 cut(s) | 139, 291, 500 |
| AfaI | GTAC | 5 cut(s) | 182, 212, 373, 384, 849 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 27, 111, 307, 578 |
| AflIII | ACRYGT | 1 cut(s) | 696 |
| AgsI | TTSAA | 3 cut(s) | 298, 447, 466 |
| AluBI | AGCT | 3 cut(s) | 52, 333, 836 |
| AluI | AGCT | 3 cut(s) | 52, 333, 836 |
| AlwI | GGATC | 2 cut(s) | 122, 358 |
| Ama87I | CYCGRG | 3 cut(s) | 98, 503, 773 |
| AoxI | GGCC | 3 cut(s) | 102, 534, 810 |
| ApeKI | GCWGC | 3 cut(s) | 24, 49, 833 |
| AspLEI | GCGC | 1 cut(s) | 141 |
| AspS9I | GGNCC | 1 cut(s) | 102 |
| AsuC2I | CCSGG | 3 cut(s) | 21, 99, 100 |
| AsuHPI | GGTGA | 3 cut(s) | 683, 736, 771 |
| AvaI | CYCGRG | 3 cut(s) | 98, 503, 773 |
| AxyI | CCTNAGG | 2 cut(s) | 720, 756 |
| BaeGI | GKGCMC | 1 cut(s) | 323 |
| BanI | GGYRCC | 3 cut(s) | 138, 320, 715 |
| BbsI | GAAGAC | 1 cut(s) | 286 |
| BbvI | GCAGC | 3 cut(s) | 11, 61, 845 |
| BccI | CCATC | 1 cut(s) | 700 |
| BceAI | ACGGC | 1 cut(s) | 152 |
| BcnI | CCSGG | 3 cut(s) | 21, 99, 100 |
| BfaI | CTAG | 2 cut(s) | 330, 632 |
| BfoI | RGCGCY | 1 cut(s) | 142 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 89 |
| BisI | GCNGC | 4 cut(s) | 25, 50, 563, 834 |
| BlsI | GCNGC | 4 cut(s) | 26, 51, 564, 835 |
| Bme1390I | CCNGG | 3 cut(s) | 21, 99, 100 |
| BmeT110I | CYCGRG | 3 cut(s) | 98, 503, 773 |
| BmgT120I | GGNCC | 1 cut(s) | 102 |
| BmiI | GGNNCC | 5 cut(s) | 32, 103, 140, 322, 717 |
| BmrFI | CCNGG | 3 cut(s) | 21, 99, 100 |
| BpiI | GAAGAC | 1 cut(s) | 286 |
| BpmI | CTGGAG | 2 cut(s) | 246, 510 |
| BpuMI | CCSGG | 3 cut(s) | 21, 99, 100 |
| BsaAI | YACGTR | 1 cut(s) | 371 |
| BsaHI | GRCGYC | 3 cut(s) | 139, 291, 500 |
| BsaJI | CCNNGG | 4 cut(s) | 98, 99, 304, 813 |
| BsaWI | WCCGGW | 1 cut(s) | 646 |
| BsaXI | ACNNNNNCTCC | 1 cut(s) | 31 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 27, 111, 307, 578 |
| Bse118I | RCCGGY | 1 cut(s) | 27 |
| Bse1I | ACTGG | 1 cut(s) | 212 |
| Bse21I | CCTNAGG | 2 cut(s) | 720, 756 |
| BseDI | CCNNGG | 4 cut(s) | 98, 99, 304, 813 |
| BseGI | GGATG | 1 cut(s) | 823 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 27, 111, 307, 578 |
| BseMII | CTCAG | 3 cut(s) | 54, 611, 747 |
| BseNI | ACTGG | 1 cut(s) | 212 |
| BseRI | GAGGAG | 4 cut(s) | 44, 251, 254, 561 |
| BseSI | GKGCMC | 1 cut(s) | 323 |
| BseXI | GCAGC | 3 cut(s) | 11, 61, 845 |
| BsgI | GTGCAG | 1 cut(s) | 110 |
| BshFI | GGCC | 3 cut(s) | 104, 536, 812 |
| BshNI | GGYRCC | 3 cut(s) | 138, 320, 715 |
| BsiHKCI | CYCGRG | 3 cut(s) | 98, 503, 773 |
| BsiSI | CCGG | 5 cut(s) | 21, 28, 89, 99, 647 |
| BsiWI | CGTACG | 1 cut(s) | 180 |
| BslFI | GGGAC | 2 cut(s) | 302, 565 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 27, 111, 307, 578 |
| BsmFI | GGGAC | 2 cut(s) | 302, 565 |
| BsnI | GGCC | 3 cut(s) | 104, 536, 812 |
| BsoBI | CYCGRG | 3 cut(s) | 98, 503, 773 |
| Bsp1286I | GDGCHC | 1 cut(s) | 323 |
| Bsp143I | GATC | 3 cut(s) | 114, 350, 449 |
| Bsp19I | CCATGG | 1 cut(s) | 813 |
| BspACI | CCGC | 2 cut(s) | 301, 563 |
| BspANI | GGCC | 3 cut(s) | 104, 536, 812 |
| BspCNI | CTCAG | 3 cut(s) | 53, 610, 748 |
| BspLI | GGNNCC | 5 cut(s) | 32, 103, 140, 322, 717 |
| BspPI | GGATC | 2 cut(s) | 122, 358 |
| BspQI | GCTCTTC | 2 cut(s) | 39, 645 |
| BspT107I | GGYRCC | 3 cut(s) | 138, 320, 715 |
| BsrFI | RCCGGY | 1 cut(s) | 27 |
| BsrI | ACTGG | 1 cut(s) | 212 |
| BssAI | RCCGGY | 1 cut(s) | 27 |
| BssECI | CCNNGG | 4 cut(s) | 98, 99, 304, 813 |
| BssMI | GATC | 3 cut(s) | 114, 350, 449 |
| BssNI | GRCGYC | 3 cut(s) | 139, 291, 500 |
| BssT1I | CCWWGG | 2 cut(s) | 304, 813 |
| Bst4CI | ACNGT | 2 cut(s) | 150, 852 |
| Bst6I | CTCTTC | 3 cut(s) | 39, 194, 645 |
| BstACI | GRCGYC | 3 cut(s) | 139, 291, 500 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 803 |
| BstBAI | YACGTR | 1 cut(s) | 371 |
| BstC8I | GCNNGC | 1 cut(s) | 734 |
| BstDEI | CTNAG | 4 cut(s) | 40, 597, 720, 756 |
| BstDSI | CCRYGG | 1 cut(s) | 813 |
| BstF5I | GGATG | 1 cut(s) | 823 |
| BstH2I | RGCGCY | 1 cut(s) | 142 |
| BstHHI | GCGC | 1 cut(s) | 141 |
| BstKTI | GATC | 3 cut(s) | 117, 353, 452 |
| BstMBI | GATC | 3 cut(s) | 114, 350, 449 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 89, 673, 794, 803, 833 |
| BstNSI | RCATGY | 2 cut(s) | 700, 736 |
| BstSCI | CCNGG | 3 cut(s) | 19, 97, 98 |
| BstSLI | GKGCMC | 1 cut(s) | 323 |
| BstV1I | GCAGC | 3 cut(s) | 11, 61, 845 |
| BstV2I | GAAGAC | 1 cut(s) | 286 |
| Bsu36I | CCTNAGG | 2 cut(s) | 720, 756 |
| BsuRI | GGCC | 3 cut(s) | 104, 536, 812 |
| BtgI | CCRYGG | 1 cut(s) | 813 |
| BtsCI | GGATG | 1 cut(s) | 823 |
| BtsIMutI | CAGTG | 1 cut(s) | 205 |
| Cac8I | GCNNGC | 1 cut(s) | 734 |
| CfoI | GCGC | 1 cut(s) | 141 |
| Cfr10I | RCCGGY | 1 cut(s) | 27 |
| Cfr13I | GGNCC | 1 cut(s) | 102 |
| Cfr9I | CCCGGG | 1 cut(s) | 98 |
| CseI | GACGC | 1 cut(s) | 508 |
| Csp6I | GTAC | 5 cut(s) | 181, 211, 372, 383, 848 |
| CviAII | CATG | 3 cut(s) | 697, 733, 814 |
| CviQI | GTAC | 5 cut(s) | 181, 211, 372, 383, 848 |
| DdeI | CTNAG | 4 cut(s) | 40, 597, 720, 756 |
| DinI | GGCGCC | 1 cut(s) | 140 |
| DpnI | GATC | 3 cut(s) | 116, 352, 451 |
| DpnII | GATC | 3 cut(s) | 114, 350, 449 |
| DraI | TTTAAA | 1 cut(s) | 792 |
| Eam1104I | CTCTTC | 3 cut(s) | 39, 194, 645 |
| EarI | CTCTTC | 3 cut(s) | 39, 194, 645 |
| Eco130I | CCWWGG | 2 cut(s) | 304, 813 |
| Eco147I | AGGCCT | 1 cut(s) | 536 |
| Eco81I | CCTNAGG | 2 cut(s) | 720, 756 |
| Eco88I | CYCGRG | 3 cut(s) | 98, 503, 773 |
| EcoO109I | RGGNCCY | 1 cut(s) | 102 |
| EcoT14I | CCWWGG | 2 cut(s) | 304, 813 |
| EgeI | GGCGCC | 1 cut(s) | 140 |
| EheI | GGCGCC | 1 cut(s) | 140 |
| ErhI | CCWWGG | 2 cut(s) | 304, 813 |
| FaeI | CATG | 3 cut(s) | 700, 736, 817 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 317, 349 |
| FaqI | GGGAC | 2 cut(s) | 302, 565 |
| FatI | CATG | 3 cut(s) | 696, 732, 813 |
| FblI | GTMKAC | 2 cut(s) | 339, 515 |
| Fnu4HI | GCNGC | 4 cut(s) | 25, 50, 563, 834 |
| FokI | GGATG | 1 cut(s) | 830 |
| Fsp4HI | GCNGC | 4 cut(s) | 25, 50, 563, 834 |
| FspBI | CTAG | 2 cut(s) | 330, 632 |
| GlaI | GCGC | 1 cut(s) | 140 |
| GluI | GCNGC | 4 cut(s) | 25, 50, 563, 834 |
| GsuI | CTGGAG | 2 cut(s) | 246, 510 |
| HaeII | RGCGCY | 1 cut(s) | 142 |
| HaeIII | GGCC | 3 cut(s) | 104, 536, 812 |
| HapII | CCGG | 5 cut(s) | 21, 28, 89, 99, 647 |
| HgaI | GACGC | 1 cut(s) | 508 |
| HhaI | GCGC | 1 cut(s) | 141 |
| Hin1I | GRCGYC | 3 cut(s) | 139, 291, 500 |
| Hin1II | CATG | 3 cut(s) | 700, 736, 817 |
| Hin6I | GCGC | 1 cut(s) | 139 |
| HinP1I | GCGC | 1 cut(s) | 139 |
| HincII | GTYRAC | 1 cut(s) | 694 |
| HindII | GTYRAC | 1 cut(s) | 694 |
| HinfI | GANTC | 3 cut(s) | 613, 637, 776 |
| HpaII | CCGG | 5 cut(s) | 21, 28, 89, 99, 647 |
| HphI | GGTGA | 3 cut(s) | 683, 736, 771 |
| Hpy166II | GTNNAC | 3 cut(s) | 340, 516, 694 |
| Hpy188I | TCNGA | 4 cut(s) | 43, 119, 154, 454 |
| Hpy188III | TCNNGA | 4 cut(s) | 447, 530, 550, 755 |
| Hpy8I | GTNNAC | 3 cut(s) | 340, 516, 694 |
| HpyAV | CCTTC | 3 cut(s) | 341, 651, 823 |
| HpyCH4III | ACNGT | 2 cut(s) | 150, 852 |
| HpyCH4IV | ACGT | 3 cut(s) | 291, 370, 541 |
| HpyCH4V | TGCA | 2 cut(s) | 127, 806 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 89, 673, 794, 803, 833 |
| HpyF3I | CTNAG | 4 cut(s) | 40, 597, 720, 756 |
| HpySE526I | ACGT | 3 cut(s) | 291, 370, 541 |
| Hsp92I | GRCGYC | 3 cut(s) | 139, 291, 500 |
| Hsp92II | CATG | 3 cut(s) | 700, 736, 817 |
| HspAI | GCGC | 1 cut(s) | 139 |
| KasI | GGCGCC | 1 cut(s) | 138 |
| Kzo9I | GATC | 3 cut(s) | 114, 350, 449 |
| LguI | GCTCTTC | 2 cut(s) | 39, 645 |
| LmnI | GCTCC | 1 cut(s) | 57 |
| Lsp1109I | GCAGC | 3 cut(s) | 11, 61, 845 |
| MaeI | CTAG | 2 cut(s) | 330, 632 |
| MaeII | ACGT | 3 cut(s) | 291, 370, 541 |
| MaeIII | GTNAC | 5 cut(s) | 156, 496, 542, 724, 777 |
| MalI | GATC | 3 cut(s) | 116, 352, 451 |
| MboI | GATC | 3 cut(s) | 114, 350, 449 |
| MboII | GAAGA | 5 cut(s) | 56, 211, 256, 286, 662 |
| MhlI | GDGCHC | 1 cut(s) | 323 |
| MluCI | AATT | 2 cut(s) | 163, 466 |
| Mly113I | GGCGCC | 1 cut(s) | 139 |
| MlyI | GAGTC | 2 cut(s) | 622, 785 |
| MmeI | TCCRAC | 2 cut(s) | 681, 726 |
| MseI | TTAA | 1 cut(s) | 791 |
| MspA1I | CMGCKG | 1 cut(s) | 836 |
| MspI | CCGG | 5 cut(s) | 21, 28, 89, 99, 647 |
| MspR9I | CCNGG | 3 cut(s) | 21, 99, 100 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 89, 673, 794, 803, 833 |
| NarI | GGCGCC | 1 cut(s) | 139 |
| NciI | CCSGG | 3 cut(s) | 21, 99, 100 |
| NcoI | CCATGG | 1 cut(s) | 813 |
| NdeII | GATC | 3 cut(s) | 114, 350, 449 |
| NlaIII | CATG | 3 cut(s) | 700, 736, 817 |
| NlaIV | GGNNCC | 5 cut(s) | 32, 103, 140, 322, 717 |
| NmeAIII | GCCGAG | 1 cut(s) | 461 |
| NmuCI | GTSAC | 3 cut(s) | 496, 724, 777 |
| NspI | RCATGY | 2 cut(s) | 700, 736 |
| PaeI | GCATGC | 1 cut(s) | 736 |
| PaeR7I | CTCGAG | 1 cut(s) | 773 |
| PceI | AGGCCT | 1 cut(s) | 536 |
| PciI | ACATGT | 1 cut(s) | 696 |
| PciSI | GCTCTTC | 2 cut(s) | 39, 645 |
| PfeI | GAWTC | 1 cut(s) | 637 |
| Pfl23II | CGTACG | 1 cut(s) | 180 |
| PkrI | GCNGC | 4 cut(s) | 26, 51, 564, 835 |
| PleI | GAGTC | 2 cut(s) | 621, 784 |
| PluTI | GGCGCC | 1 cut(s) | 142 |
| PpsI | GAGTC | 2 cut(s) | 621, 784 |
| Ppu21I | YACGTR | 1 cut(s) | 371 |
| PscI | ACATGT | 1 cut(s) | 696 |
| PspLI | CGTACG | 1 cut(s) | 180 |
| PspN4I | GGNNCC | 5 cut(s) | 32, 103, 140, 322, 717 |
| PspPI | GGNCC | 1 cut(s) | 102 |
| PspXI | VCTCGAGB | 1 cut(s) | 773 |
| PvuII | CAGCTG | 1 cut(s) | 836 |
| RsaI | GTAC | 5 cut(s) | 182, 212, 373, 384, 849 |
| RsaNI | GTAC | 5 cut(s) | 181, 211, 372, 383, 848 |
| SapI | GCTCTTC | 2 cut(s) | 39, 645 |
| SaqAI | TTAA | 1 cut(s) | 791 |
| SatI | GCNGC | 4 cut(s) | 25, 50, 563, 834 |
| Sau3AI | GATC | 3 cut(s) | 114, 350, 449 |
| Sau96I | GGNCC | 1 cut(s) | 102 |
| SchI | GAGTC | 2 cut(s) | 622, 785 |
| ScrFI | CCNGG | 3 cut(s) | 21, 99, 100 |
| SduI | GDGCHC | 1 cut(s) | 323 |
| SfoI | GGCGCC | 1 cut(s) | 140 |
| Sfr274I | CTCGAG | 1 cut(s) | 773 |
| SlaI | CTCGAG | 1 cut(s) | 773 |
| SmaI | CCCGGG | 1 cut(s) | 100 |
| SmlI | CTYRAG | 1 cut(s) | 773 |
| SmoI | CTYRAG | 1 cut(s) | 773 |
| SphI | GCATGC | 1 cut(s) | 736 |
| Sse9I | AATT | 2 cut(s) | 163, 466 |
| SseBI | AGGCCT | 1 cut(s) | 536 |
| SsiI | CCGC | 2 cut(s) | 301, 563 |
| SspDI | GGCGCC | 1 cut(s) | 138 |
| SspMI | CTAG | 2 cut(s) | 330, 632 |
| StuI | AGGCCT | 1 cut(s) | 536 |
| StyD4I | CCNGG | 3 cut(s) | 19, 97, 98 |
| StyI | CCWWGG | 2 cut(s) | 304, 813 |
| TaaI | ACNGT | 2 cut(s) | 150, 852 |
| TaiI | ACGT | 3 cut(s) | 294, 373, 544 |
| TaqI | TCGA | 4 cut(s) | 71, 144, 414, 774 |
| TasI | AATT | 2 cut(s) | 163, 466 |
| TauI | GCSGC | 1 cut(s) | 565 |
| TfiI | GAWTC | 1 cut(s) | 637 |
| Tru1I | TTAA | 1 cut(s) | 791 |
| Tru9I | TTAA | 1 cut(s) | 791 |
| TscAI | CASTG | 1 cut(s) | 212 |
| TseFI | GTSAC | 3 cut(s) | 496, 724, 777 |
| TseI | GCWGC | 3 cut(s) | 24, 49, 833 |
| Tsp45I | GTSAC | 3 cut(s) | 496, 724, 777 |
| TspDTI | ATGAA | 1 cut(s) | 360 |
| TspMI | CCCGGG | 1 cut(s) | 98 |
| TspRI | CASTG | 1 cut(s) | 212 |
| XceI | RCATGY | 2 cut(s) | 700, 736 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 820 |
| XhoI | CTCGAG | 1 cut(s) | 773 |
| XmaI | CCCGGG | 1 cut(s) | 98 |
| XmiI | GTMKAC | 2 cut(s) | 339, 515 |
| XspI | CTAG | 2 cut(s) | 330, 632 |
| ZraI | GACGTC | 1 cut(s) | 292 |