Rw6G041410

RNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0016143
Physical Location & Seq
Reverse (-)
65106089 .. 65108519
2431 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G041410.1

Sequence Viewer

Length: 861 bp
ATGGCAGATTCCAAATCAACAGATGCGTTCCCTCCGGGTTTCCGGTTCCACCCTTCGGAACAGCAGCTCCTCTCCTACTATCTCTCAAACAAGAAAGCCAACCCGGCCATACCCGGTGGCTACAATACGATCAGAGAGCTGTCAGACTTACGAGGGCGTGAACAGTCCGACTTACAGAACTGGAGTTGCTATTCGTACGGTACAAAGGGAGGAAGAGGCACTGGTAAGGTTAGGGACGTGTTCAGCCTCCAAGGTGTTGTTTTGGGCGCCAGGACTAGCTTTGTCTATTACTACGGGTCGCCCGACACAGCCTCACCGACTGCTTGGGTACTCTATCAGTATGCTCTGGCTAATCATGTCGAGGGTTCTTTCGTTCTATGCCGAATATTTTCAAGATCAGATAGTGATTTCAATTCCTGCGCTAATAATGATGAAGTACTCATGCCCAAGCCTGAGACTGTTTCTACAACAAGTAATGAACAGCTGCCGTCATGGCCTGCTCAAGGACCAAGGCCCAGAGGTGCTTCGATGCCATACTATGGTGAATTACTAGCTCCACTTCCCGGTTACTTTCTACCGCCTGTTCCTCCTGTTCAGTCTTTGCCTAGGTCTGTGCCTACAGTTTTGACCACAGCCCTAGTGAATGCCACACCGGAAGAGAGAAGGAATATGCTTGGTGAGGAATTGTTTCCTCTCGTTGAAATGTGGGAGAAGGACAAGGCAGCTAAGGTGACAGGCATGCTTCTGGAGATGGACAATCCTGAGATATTACATTTGCTAGAGTCACCAGAGGCTTTAAGGGCAAAAATTGCAGAGGCCATGGATGTCTTAGCGAAGGTAGCTGCCGATGGGAAACAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko03015 ko03018 map03013 map03015 map03018
Pfam Domains
Protein Families
PABP

Protein Analysis

286

Amino Acids

31.52

Weight (kDa)

5.37

Isoelectric Point (pI)

50.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MLLE PF00658 213 - 277 1.7e-27 MLLE domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016143)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G19350
fragaria_vesca FvH4_2g34070
rosa_chinensis RchiOBHm_Chr6g0308281
rosa_laevigata RLG00000010651
rosa_multiflora Rmu_sc0005523.1_g000005 Rmu_sc0013917.1_g000002 Rmu_ssc0000355.1_g000010 Rmu_ssc0000355.1_g000012
rosa_roxburghii Rroxscaffold_7G00160290
rosa_samantha Rh6AG474800 Rh6BG485400 Rh6CG490500 Rh6DG476900 Rh6DG477100
rosa_wichuraiana Rw6G041410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 266
AccB7I CCANNNNNTGG 1 cut(s) 539
AciI CCGC 1 cut(s) 578
AcoI YGGCCR 1 cut(s) 105
AcyI GRCGYC 1 cut(s) 267
AfaI GTAC 4 cut(s) 197, 202, 330, 438
AfiI CCNNNNNNNGG 4 cut(s) 55, 503, 539, 563
AflIII ACRYGT 1 cut(s) 237
AgsI TTSAA 3 cut(s) 393, 412, 701
AjiI CACGTC 1 cut(s) 238
AjnI CCWGG 1 cut(s) 269
AloI GAACNNNNNNTCC 2 cut(s) 51, 83
AluBI AGCT 7 cut(s) 67, 139, 279, 484, 554, 725, 842
AluI AGCT 7 cut(s) 67, 139, 279, 484, 554, 725, 842
Alw26I GTCTC 1 cut(s) 449
AoxI GGCC 4 cut(s) 105, 494, 512, 816
ApeKI GCWGC 4 cut(s) 64, 484, 722, 842
Asp700I GAANNNNTTC 2 cut(s) 388, 687
AspA2I CCTAGG 1 cut(s) 605
AspLEI GCGC 2 cut(s) 269, 422
AspS9I GGNCC 2 cut(s) 506, 513
AsuC2I CCSGG 4 cut(s) 36, 104, 114, 564
AsuHPI GGTGA 5 cut(s) 306, 554, 689, 742, 777
AvaII GGWCC 1 cut(s) 506
AvrII CCTAGG 1 cut(s) 605
BanI GGYRCC 1 cut(s) 266
BbvI GCAGC 4 cut(s) 76, 471, 734, 829
BccI CCATC 2 cut(s) 745, 842
BceAI ACGGC 1 cut(s) 472
BciT130I CCWGG 1 cut(s) 271
BcnI CCSGG 4 cut(s) 36, 104, 114, 564
BcoDI GTCTC 1 cut(s) 449
BfaI CTAG 5 cut(s) 276, 551, 606, 638, 779
BfmI CTRYAG 1 cut(s) 618
BfoI RGCGCY 1 cut(s) 270
BglI GCCNNNNNGGC 2 cut(s) 104, 493
BisI GCNGC 4 cut(s) 65, 485, 723, 843
BlnI CCTAGG 1 cut(s) 605
BlsI GCNGC 4 cut(s) 66, 486, 724, 844
BmcAI AGTACT 1 cut(s) 438
Bme1390I CCNGG 5 cut(s) 36, 104, 114, 271, 564
Bme18I GGWCC 1 cut(s) 506
BmgBI CACGTC 1 cut(s) 238
BmgT120I GGNCC 2 cut(s) 506, 513
BmiI GGNNCC 2 cut(s) 47, 268
BmrFI CCNGG 5 cut(s) 36, 104, 114, 271, 564
BmsI GCATC 2 cut(s) 13, 519
BpmI CTGGAG 2 cut(s) 202, 767
Bpu10I CCTNAGC 1 cut(s) 726
BpuEI CTTGAG 1 cut(s) 486
BpuMI CCSGG 4 cut(s) 36, 104, 114, 564
BsaHI GRCGYC 1 cut(s) 267
BsaJI CCNNGG 4 cut(s) 250, 509, 605, 819
BsaWI WCCGGW 2 cut(s) 42, 652
BsaXI ACNNNNNCTCC 2 cut(s) 51, 81
Bsc4I CCNNNNNNNGG 4 cut(s) 55, 503, 539, 563
Bse1I ACTGG 2 cut(s) 185, 226
BseBI CCWGG 1 cut(s) 271
BseDI CCNNGG 4 cut(s) 250, 509, 605, 819
BseGI GGATG 1 cut(s) 829
BseLI CCNNNNNNNGG 4 cut(s) 55, 503, 539, 563
BseMII CTCAG 2 cut(s) 444, 753
BseNI ACTGG 2 cut(s) 185, 226
BseRI GAGGAG 1 cut(s) 59
BseXI GCAGC 4 cut(s) 76, 471, 734, 829
BshFI GGCC 4 cut(s) 107, 496, 514, 818
BshNI GGYRCC 1 cut(s) 266
BsiSI CCGG 6 cut(s) 35, 43, 104, 114, 564, 653
BsiWI CGTACG 1 cut(s) 195
BslFI GGGAC 1 cut(s) 248
BslI CCNNNNNNNGG 4 cut(s) 55, 503, 539, 563
BsmAI GTCTC 1 cut(s) 449
BsmFI GGGAC 1 cut(s) 248
BsmI GAATGC 1 cut(s) 649
BsnI GGCC 4 cut(s) 107, 496, 514, 818
Bsp143I GATC 2 cut(s) 129, 395
Bsp19I CCATGG 1 cut(s) 819
BspACI CCGC 1 cut(s) 578
BspANI GGCC 4 cut(s) 107, 496, 514, 818
BspCNI CTCAG 2 cut(s) 445, 754
BspLI GGNNCC 2 cut(s) 47, 268
BspT107I GGYRCC 1 cut(s) 266
BsrI ACTGG 2 cut(s) 185, 226
BssECI CCNNGG 4 cut(s) 250, 509, 605, 819
BssMI GATC 2 cut(s) 129, 395
BssNI GRCGYC 1 cut(s) 267
BssT1I CCWWGG 4 cut(s) 250, 509, 605, 819
Bst2UI CCWGG 1 cut(s) 271
Bst4CI ACNGT 5 cut(s) 165, 200, 460, 622, 858
Bst6I CTCTTC 2 cut(s) 208, 651
BstACI GRCGYC 1 cut(s) 267
BstAPI GCANNNNNTGC 1 cut(s) 809
BstC8I GCNNGC 2 cut(s) 498, 740
BstDEI CTNAG 4 cut(s) 453, 726, 762, 829
BstDSI CCRYGG 1 cut(s) 819
BstENI CCTNNNNNAGG 1 cut(s) 501
BstF5I GGATG 1 cut(s) 829
BstH2I RGCGCY 1 cut(s) 270
BstHHI GCGC 2 cut(s) 269, 422
BstKTI GATC 2 cut(s) 132, 398
BstMAI GTCTC 1 cut(s) 449
BstMBI GATC 2 cut(s) 129, 395
BstMWI GCNNNNNNNGC 5 cut(s) 104, 493, 800, 809, 839
BstNI CCWGG 1 cut(s) 271
BstNSI RCATGY 1 cut(s) 742
BstSCI CCNGG 5 cut(s) 34, 102, 112, 269, 562
BstSFI CTRYAG 1 cut(s) 618
BstV1I GCAGC 4 cut(s) 76, 471, 734, 829
BsuRI GGCC 4 cut(s) 107, 496, 514, 818
BtgI CCRYGG 1 cut(s) 819
BtrI CACGTC 1 cut(s) 238
BtsCI GGATG 1 cut(s) 829
BtsIMutI CAGTG 1 cut(s) 219
Cac8I GCNNGC 2 cut(s) 498, 740
CfoI GCGC 2 cut(s) 269, 422
Cfr13I GGNCC 2 cut(s) 506, 513
Csp6I GTAC 4 cut(s) 196, 201, 329, 437
CviAII CATG 5 cut(s) 356, 442, 492, 739, 820
CviQI GTAC 4 cut(s) 196, 201, 329, 437
DdeI CTNAG 4 cut(s) 453, 726, 762, 829
DinI GGCGCC 1 cut(s) 268
DpnI GATC 2 cut(s) 131, 397
DpnII GATC 2 cut(s) 129, 395
EaeI YGGCCR 1 cut(s) 105
Eam1104I CTCTTC 2 cut(s) 208, 651
EarI CTCTTC 2 cut(s) 208, 651
Eco130I CCWWGG 4 cut(s) 250, 509, 605, 819
Eco47I GGWCC 1 cut(s) 506
EcoNI CCTNNNNNAGG 1 cut(s) 501
EcoRII CCWGG 1 cut(s) 269
EcoT14I CCWWGG 4 cut(s) 250, 509, 605, 819
EgeI GGCGCC 1 cut(s) 268
EheI GGCGCC 1 cut(s) 268
ErhI CCWWGG 4 cut(s) 250, 509, 605, 819
FaeI CATG 5 cut(s) 359, 445, 495, 742, 823
FaqI GGGAC 1 cut(s) 248
FatI CATG 5 cut(s) 355, 441, 491, 738, 819
Fnu4HI GCNGC 4 cut(s) 65, 485, 723, 843
FokI GGATG 1 cut(s) 836
Fsp4HI GCNGC 4 cut(s) 65, 485, 723, 843
FspBI CTAG 5 cut(s) 276, 551, 606, 638, 779
GlaI GCGC 2 cut(s) 268, 421
GluI GCNGC 4 cut(s) 65, 485, 723, 843
GsuI CTGGAG 2 cut(s) 202, 767
HaeII RGCGCY 1 cut(s) 270
HaeIII GGCC 4 cut(s) 107, 496, 514, 818
HapII CCGG 6 cut(s) 35, 43, 104, 114, 564, 653
HhaI GCGC 2 cut(s) 269, 422
Hin1I GRCGYC 1 cut(s) 267
Hin1II CATG 5 cut(s) 359, 445, 495, 742, 823
Hin6I GCGC 2 cut(s) 267, 420
HinP1I GCGC 2 cut(s) 267, 420
HinfI GANTC 2 cut(s) 8, 782
HpaII CCGG 6 cut(s) 35, 43, 104, 114, 564, 653
HphI GGTGA 5 cut(s) 306, 554, 689, 742, 777
Hpy166II GTNNAC 1 cut(s) 161
Hpy188I TCNGA 5 cut(s) 58, 134, 145, 169, 400
Hpy188III TCNNGA 3 cut(s) 393, 746, 761
Hpy8I GTNNAC 1 cut(s) 161
HpyAV CCTTC 4 cut(s) 63, 657, 706, 829
HpyCH4III ACNGT 5 cut(s) 165, 200, 460, 622, 858
HpyCH4IV ACGT 1 cut(s) 237
HpyCH4V TGCA 1 cut(s) 812
HpyF10VI GCNNNNNNNGC 5 cut(s) 104, 493, 800, 809, 839
HpyF3I CTNAG 4 cut(s) 453, 726, 762, 829
HpySE526I ACGT 1 cut(s) 237
Hsp92I GRCGYC 1 cut(s) 267
Hsp92II CATG 5 cut(s) 359, 445, 495, 742, 823
HspAI GCGC 2 cut(s) 267, 420
KasI GGCGCC 1 cut(s) 266
Kzo9I GATC 2 cut(s) 129, 395
LmnI GCTCC 2 cut(s) 72, 559
Lsp1109I GCAGC 4 cut(s) 76, 471, 734, 829
LweI GCATC 2 cut(s) 13, 519
MaeI CTAG 5 cut(s) 276, 551, 606, 638, 779
MaeII ACGT 1 cut(s) 237
MaeIII GTNAC 3 cut(s) 566, 730, 783
MalI GATC 2 cut(s) 131, 397
MboI GATC 2 cut(s) 129, 395
MboII GAAGA 2 cut(s) 225, 668
MluCI AATT 4 cut(s) 412, 545, 683, 807
Mly113I GGCGCC 1 cut(s) 267
MlyI GAGTC 1 cut(s) 791
MmeI TCCRAC 1 cut(s) 192
MroXI GAANNNNTTC 2 cut(s) 388, 687
MseI TTAA 1 cut(s) 797
MspA1I CMGCKG 1 cut(s) 484
MspI CCGG 6 cut(s) 35, 43, 104, 114, 564, 653
MspR9I CCNGG 5 cut(s) 36, 104, 114, 271, 564
Mva1269I GAATGC 1 cut(s) 649
MvaI CCWGG 1 cut(s) 271
MwoI GCNNNNNNNGC 5 cut(s) 104, 493, 800, 809, 839
NarI GGCGCC 1 cut(s) 267
NciI CCSGG 4 cut(s) 36, 104, 114, 564
NcoI CCATGG 1 cut(s) 819
NdeII GATC 2 cut(s) 129, 395
NlaIII CATG 5 cut(s) 359, 445, 495, 742, 823
NlaIV GGNNCC 2 cut(s) 47, 268
NmuCI GTSAC 2 cut(s) 730, 783
NspI RCATGY 1 cut(s) 742
PaeI GCATGC 1 cut(s) 742
PcsI WCGNNNNNNNCGW 1 cut(s) 300
PctI GAATGC 1 cut(s) 649
PdmI GAANNNNTTC 2 cut(s) 388, 687
PfeI GAWTC 1 cut(s) 8
Pfl23II CGTACG 1 cut(s) 195
PflMI CCANNNNNTGG 1 cut(s) 539
PkrI GCNGC 4 cut(s) 66, 486, 724, 844
PleI GAGTC 1 cut(s) 790
PluTI GGCGCC 1 cut(s) 270
PpsI GAGTC 1 cut(s) 790
Psp6I CCWGG 1 cut(s) 269
PspGI CCWGG 1 cut(s) 269
PspLI CGTACG 1 cut(s) 195
PspN4I GGNNCC 2 cut(s) 47, 268
PspPI GGNCC 2 cut(s) 506, 513
PvuII CAGCTG 1 cut(s) 484
RsaI GTAC 4 cut(s) 197, 202, 330, 438
RsaNI GTAC 4 cut(s) 196, 201, 329, 437
SaqAI TTAA 1 cut(s) 797
SatI GCNGC 4 cut(s) 65, 485, 723, 843
Sau3AI GATC 2 cut(s) 129, 395
Sau96I GGNCC 2 cut(s) 506, 513
ScaI AGTACT 1 cut(s) 438
SchI GAGTC 1 cut(s) 791
ScrFI CCNGG 5 cut(s) 36, 104, 114, 271, 564
SfaNI GCATC 2 cut(s) 13, 519
SfcI CTRYAG 1 cut(s) 618
SfoI GGCGCC 1 cut(s) 268
SinI GGWCC 1 cut(s) 506
SmlI CTYRAG 1 cut(s) 501
SmoI CTYRAG 1 cut(s) 501
SphI GCATGC 1 cut(s) 742
Sse9I AATT 4 cut(s) 412, 545, 683, 807
SsiI CCGC 1 cut(s) 578
SspDI GGCGCC 1 cut(s) 266
SspI AATATT 1 cut(s) 387
SspMI CTAG 5 cut(s) 276, 551, 606, 638, 779
StyD4I CCNGG 5 cut(s) 34, 102, 112, 269, 562
StyI CCWWGG 4 cut(s) 250, 509, 605, 819
TaaI ACNGT 5 cut(s) 165, 200, 460, 622, 858
TaiI ACGT 1 cut(s) 240
TaqI TCGA 2 cut(s) 360, 527
TasI AATT 4 cut(s) 412, 545, 683, 807
TatI WGTACW 1 cut(s) 436
TfiI GAWTC 1 cut(s) 8
Tru1I TTAA 1 cut(s) 797
Tru9I TTAA 1 cut(s) 797
TscAI CASTG 1 cut(s) 226
TseFI GTSAC 2 cut(s) 730, 783
TseI GCWGC 4 cut(s) 64, 484, 722, 842
Tsp45I GTSAC 2 cut(s) 730, 783
TspDTI ATGAA 2 cut(s) 447, 492
TspRI CASTG 1 cut(s) 226
Van91I CCANNNNNTGG 1 cut(s) 539
VpaK11BI GGWCC 1 cut(s) 506
XagI CCTNNNNNAGG 1 cut(s) 501
XceI RCATGY 1 cut(s) 742
XmaJI CCTAGG 1 cut(s) 605
XmnI GAANNNNTTC 2 cut(s) 388, 687
XspI CTAG 5 cut(s) 276, 551, 606, 638, 779
ZrmI AGTACT 1 cut(s) 438
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.