RLG00000010651

RNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0016143
Physical Location & Seq
Forward (+)
3343234 .. 3346247
3014 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010651

Sequence Viewer

Length: 936 bp
ATGGCAGATTCCAAATCAACAGATGCGTACCCTCCCAGTTTCCGGTTCCACCCTTCAGAACAGCAGCGCCTCTCCTACTATCTCTTAAACAAGAAAGCCAACCCAGCCATACCCGGCGGCTACAATACGATCAGAGAGGTGTCCGACTTACGGGGGCGCGAACCTTCCAAGTTACAGAACTGGAGTTGCTATTCATACGGTTACAAAGGGAGGAAGAGGCACTGGTACTTTTATACGGCTGGGGTTTCGGCGGAGGAGAAGAATACCAAGCATCTGTTGGAAGAGGAAAGCCGCCAAGGAGTTGTTTTGGGCACCAGGACTAGCTTTGTCTATTACGACGGGTCGCCCGACACAGCCTCACCTATTACGACGGGTACTCTATCAGTATGCTCTGCAGCTCTGGCTAATCATGTCGAGGGTTCTTTCGTTCTATGCCGAATATTTTCAAGATCAGATAGTGATTTCAATTCCTGCGCTAATAATGACGAAGTACTCATGTCCAAGCCTGAGATTTTTTCTACAACAAGTAATGAACAGTCGAGGCCAGCTGCTGCCGCTACTCCTAGTCCCATCCAAGCATCGGTTCCACCTTCAAGTTTACAACAGTTTTTCGATTTAACAGGATCTTTGGTCATACTGCCGTCAAGGCCTGCTCAAGGACCAAGGCCCAGAGGTGCTTCGATGCCATACTATGGTGGTCCAATGATCAGGCAAGGCCAGCAGCCGCCAGTGCCACCACCCAATATGCTTGGTGAGGAAATGTTTCCTCTCGTTGAAATGTGGGAGAAGGACAAGGCAGCTAAGGTGACAGGCATGCTTCTGGAGATGGACAATCCTGAGATATTACATTTGCTAGAGTCACCAGAGGCTTTAAGGGCAAAAATTGCAGAGGCCATGGATGTCTTGTCGAAGGTAGCTGCCGATGGGAAACAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko03015 ko03018 map03013 map03015 map03018
Pfam Domains
Protein Families
PABP

Protein Analysis

312

Amino Acids

34.28

Weight (kDa)

6.25

Isoelectric Point (pI)

58.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 11 - 115 6.9e-08 No apical meristem (NAM) protein
MLLE PF00658 248 - 302 8.1e-23 MLLE domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016143)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G19350
fragaria_vesca FvH4_2g34070
rosa_chinensis RchiOBHm_Chr6g0308281
rosa_laevigata RLG00000010651
rosa_multiflora Rmu_sc0005523.1_g000005 Rmu_sc0013917.1_g000002 Rmu_ssc0000355.1_g000010 Rmu_ssc0000355.1_g000012
rosa_roxburghii Rroxscaffold_7G00160290
rosa_samantha Rh6AG474800 Rh6BG485400 Rh6CG490500 Rh6DG476900 Rh6DG477100
rosa_wichuraiana Rw6G041410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 311
AccB7I CCANNNNNTGG 1 cut(s) 692
AccII CGCG 1 cut(s) 159
AciI CCGC 5 cut(s) 117, 251, 292, 555, 725
AclWI GGATC 1 cut(s) 631
AcuI CTGAAG 1 cut(s) 39
AfaI GTAC 4 cut(s) 29, 227, 376, 492
AfiI CCNNNNNNNGG 5 cut(s) 42, 150, 580, 656, 692
AgsI TTSAA 4 cut(s) 447, 466, 594, 776
AjnI CCWGG 1 cut(s) 314
AjuI GAANNNNNNNTTGG 2 cut(s) 567, 599
AluBI AGCT 5 cut(s) 324, 398, 548, 800, 917
AluI AGCT 5 cut(s) 324, 398, 548, 800, 917
AlwI GGATC 1 cut(s) 631
AlwNI CAGNNNCTG 1 cut(s) 551
AoxI GGCC 5 cut(s) 542, 647, 665, 715, 891
ApeKI GCWGC 7 cut(s) 64, 395, 548, 551, 721, 797, 917
Asp700I GAANNNNTTC 2 cut(s) 442, 762
AspLEI GCGC 3 cut(s) 69, 159, 476
AspS9I GGNCC 3 cut(s) 659, 666, 698
AsuC2I CCSGG 1 cut(s) 114
AsuHPI GGTGA 4 cut(s) 351, 764, 817, 852
AvaII GGWCC 2 cut(s) 659, 698
BaeGI GKGCMC 1 cut(s) 314
BanI GGYRCC 1 cut(s) 311
BbvI GCAGC 7 cut(s) 76, 407, 535, 538, 733, 809, 904
BccI CCATC 3 cut(s) 578, 820, 917
BceAI ACGGC 2 cut(s) 252, 625
BciT130I CCWGG 1 cut(s) 316
BclI TGATCA 1 cut(s) 705
BcnI CCSGG 1 cut(s) 114
BfaI CTAG 3 cut(s) 321, 564, 854
BfmI CTRYAG 1 cut(s) 393
BfoI RGCGCY 1 cut(s) 70
BglI GCCNNNNNGGC 1 cut(s) 646
BmcAI AGTACT 1 cut(s) 492
Bme1390I CCNGG 2 cut(s) 114, 316
Bme18I GGWCC 2 cut(s) 659, 698
BmgT120I GGNCC 3 cut(s) 659, 666, 698
BmiI GGNNCC 3 cut(s) 47, 313, 585
BmrFI CCNGG 2 cut(s) 114, 316
BmrI ACTGGG 1 cut(s) 30
BmsI GCATC 4 cut(s) 13, 280, 587, 672
BmuI ACTGGG 1 cut(s) 30
BpmI CTGGAG 2 cut(s) 202, 842
Bpu10I CCTNAGC 1 cut(s) 801
BpuEI CTTGAG 1 cut(s) 639
BpuMI CCSGG 1 cut(s) 114
BsaJI CCNNGG 3 cut(s) 295, 662, 894
BsaWI WCCGGW 1 cut(s) 42
Bsc4I CCNNNNNNNGG 5 cut(s) 42, 150, 580, 656, 692
Bse1I ACTGG 4 cut(s) 36, 185, 227, 728
BseBI CCWGG 1 cut(s) 316
BseDI CCNNGG 3 cut(s) 295, 662, 894
BseGI GGATG 2 cut(s) 570, 904
BseLI CCNNNNNNNGG 5 cut(s) 42, 150, 580, 656, 692
BseMII CTCAG 2 cut(s) 498, 828
BseNI ACTGG 4 cut(s) 36, 185, 227, 728
BseRI GAGGAG 1 cut(s) 269
BseSI GKGCMC 1 cut(s) 314
BseXI GCAGC 7 cut(s) 76, 407, 535, 538, 733, 809, 904
BseYI CCCAGC 2 cut(s) 103, 239
Bsh1236I CGCG 1 cut(s) 159
BshFI GGCC 5 cut(s) 544, 649, 667, 717, 893
BshNI GGYRCC 1 cut(s) 311
BsiSI CCGG 2 cut(s) 43, 114
BslFI GGGAC 1 cut(s) 552
BslI CCNNNNNNNGG 5 cut(s) 42, 150, 580, 656, 692
BsmFI GGGAC 1 cut(s) 552
BsnI GGCC 5 cut(s) 544, 649, 667, 717, 893
Bsp1286I GDGCHC 1 cut(s) 314
Bsp143I GATC 4 cut(s) 129, 449, 623, 705
Bsp19I CCATGG 1 cut(s) 894
BspACI CCGC 5 cut(s) 117, 251, 292, 555, 725
BspANI GGCC 5 cut(s) 544, 649, 667, 717, 893
BspCNI CTCAG 2 cut(s) 499, 829
BspFNI CGCG 1 cut(s) 159
BspLI GGNNCC 3 cut(s) 47, 313, 585
BspMAI CTGCAG 1 cut(s) 397
BspPI GGATC 1 cut(s) 631
BspT107I GGYRCC 1 cut(s) 311
BsrI ACTGG 4 cut(s) 36, 185, 227, 728
BssECI CCNNGG 3 cut(s) 295, 662, 894
BssMI GATC 4 cut(s) 129, 449, 623, 705
BssT1I CCWWGG 3 cut(s) 295, 662, 894
Bst2UI CCWGG 1 cut(s) 316
Bst4CI ACNGT 4 cut(s) 200, 537, 606, 933
Bst6I CTCTTC 2 cut(s) 209, 276
BstAPI GCANNNNNTGC 1 cut(s) 884
BstC8I GCNNGC 4 cut(s) 546, 651, 719, 815
BstDEI CTNAG 3 cut(s) 507, 801, 837
BstDSI CCRYGG 1 cut(s) 894
BstENI CCTNNNNNAGG 1 cut(s) 654
BstF5I GGATG 2 cut(s) 570, 904
BstFNI CGCG 1 cut(s) 159
BstH2I RGCGCY 1 cut(s) 70
BstHHI GCGC 3 cut(s) 69, 159, 476
BstKTI GATC 4 cut(s) 132, 452, 626, 708
BstMBI GATC 4 cut(s) 129, 449, 623, 705
BstMWI GCNNNNNNNGC 8 cut(s) 104, 401, 554, 646, 718, 730, 875, 884
BstNI CCWGG 1 cut(s) 316
BstNSI RCATGY 1 cut(s) 817
BstSCI CCNGG 2 cut(s) 112, 314
BstSFI CTRYAG 1 cut(s) 393
BstSLI GKGCMC 1 cut(s) 314
BstUI CGCG 1 cut(s) 159
BstV1I GCAGC 7 cut(s) 76, 407, 535, 538, 733, 809, 904
BstX2I RGATCY 1 cut(s) 623
BstYI RGATCY 1 cut(s) 623
BsuRI GGCC 5 cut(s) 544, 649, 667, 717, 893
BtgI CCRYGG 1 cut(s) 894
BtsCI GGATG 2 cut(s) 570, 904
BtsIMutI CAGTG 2 cut(s) 220, 735
Cac8I GCNNGC 4 cut(s) 546, 651, 719, 815
CaiI CAGNNNCTG 1 cut(s) 551
CfoI GCGC 3 cut(s) 69, 159, 476
Cfr13I GGNCC 3 cut(s) 659, 666, 698
Csp6I GTAC 4 cut(s) 28, 226, 375, 491
CviAII CATG 4 cut(s) 410, 496, 814, 895
CviQI GTAC 4 cut(s) 28, 226, 375, 491
DdeI CTNAG 3 cut(s) 507, 801, 837
DpnI GATC 4 cut(s) 131, 451, 625, 707
DpnII GATC 4 cut(s) 129, 449, 623, 705
Eam1104I CTCTTC 2 cut(s) 209, 276
EarI CTCTTC 2 cut(s) 209, 276
EciI GGCGGA 1 cut(s) 266
Eco130I CCWWGG 3 cut(s) 295, 662, 894
Eco147I AGGCCT 1 cut(s) 649
Eco47I GGWCC 2 cut(s) 659, 698
Eco57I CTGAAG 1 cut(s) 39
EcoNI CCTNNNNNAGG 1 cut(s) 654
EcoRII CCWGG 1 cut(s) 314
EcoT14I CCWWGG 3 cut(s) 295, 662, 894
ErhI CCWWGG 3 cut(s) 295, 662, 894
FaeI CATG 4 cut(s) 413, 499, 817, 898
FaqI GGGAC 1 cut(s) 552
FatI CATG 4 cut(s) 409, 495, 813, 894
FbaI TGATCA 1 cut(s) 705
FokI GGATG 2 cut(s) 557, 911
FspBI CTAG 3 cut(s) 321, 564, 854
GlaI GCGC 3 cut(s) 68, 158, 475
GsaI CCCAGC 2 cut(s) 107, 243
GsuI CTGGAG 2 cut(s) 202, 842
HaeII RGCGCY 1 cut(s) 70
HaeIII GGCC 5 cut(s) 544, 649, 667, 717, 893
HapII CCGG 2 cut(s) 43, 114
HhaI GCGC 3 cut(s) 69, 159, 476
Hin1II CATG 4 cut(s) 413, 499, 817, 898
Hin6I GCGC 3 cut(s) 67, 157, 474
HinP1I GCGC 3 cut(s) 67, 157, 474
HinfI GANTC 2 cut(s) 8, 857
HpaII CCGG 2 cut(s) 43, 114
HphI GGTGA 4 cut(s) 351, 764, 817, 852
Hpy166II GTNNAC 1 cut(s) 599
Hpy188I TCNGA 4 cut(s) 58, 134, 145, 454
Hpy188III TCNNGA 3 cut(s) 447, 821, 836
Hpy8I GTNNAC 1 cut(s) 599
Hpy99I CGWCG 2 cut(s) 341, 373
HpyAV CCTTC 5 cut(s) 63, 174, 600, 781, 904
HpyCH4III ACNGT 4 cut(s) 200, 537, 606, 933
HpyCH4V TGCA 2 cut(s) 395, 887
HpyF10VI GCNNNNNNNGC 8 cut(s) 104, 401, 554, 646, 718, 730, 875, 884
HpyF3I CTNAG 3 cut(s) 507, 801, 837
Hsp92II CATG 4 cut(s) 413, 499, 817, 898
HspAI GCGC 3 cut(s) 67, 157, 474
Ksp22I TGATCA 1 cut(s) 705
Kzo9I GATC 4 cut(s) 129, 449, 623, 705
Lsp1109I GCAGC 7 cut(s) 76, 407, 535, 538, 733, 809, 904
LweI GCATC 4 cut(s) 13, 280, 587, 672
MaeI CTAG 3 cut(s) 321, 564, 854
MaeIII GTNAC 4 cut(s) 171, 200, 805, 858
MalI GATC 4 cut(s) 131, 451, 625, 707
MboI GATC 4 cut(s) 129, 449, 623, 705
MboII GAAGA 3 cut(s) 226, 271, 293
MflI RGATCY 1 cut(s) 623
MhlI GDGCHC 1 cut(s) 314
MluCI AATT 2 cut(s) 466, 882
MlyI GAGTC 1 cut(s) 866
MmeI TCCRAC 2 cut(s) 168, 258
MroXI GAANNNNTTC 2 cut(s) 442, 762
MseI TTAA 3 cut(s) 86, 617, 872
MspA1I CMGCKG 1 cut(s) 548
MspI CCGG 2 cut(s) 43, 114
MspR9I CCNGG 2 cut(s) 114, 316
MvaI CCWGG 1 cut(s) 316
MvnI CGCG 1 cut(s) 159
MwoI GCNNNNNNNGC 8 cut(s) 104, 401, 554, 646, 718, 730, 875, 884
NciI CCSGG 1 cut(s) 114
NcoI CCATGG 1 cut(s) 894
NdeII GATC 4 cut(s) 129, 449, 623, 705
NlaIII CATG 4 cut(s) 413, 499, 817, 898
NlaIV GGNNCC 3 cut(s) 47, 313, 585
NmuCI GTSAC 2 cut(s) 805, 858
NspI RCATGY 1 cut(s) 817
PaeI GCATGC 1 cut(s) 817
PceI AGGCCT 1 cut(s) 649
PcsI WCGNNNNNNNCGW 1 cut(s) 345
PdmI GAANNNNTTC 2 cut(s) 442, 762
PfeI GAWTC 1 cut(s) 8
PflMI CCANNNNNTGG 1 cut(s) 692
PleI GAGTC 1 cut(s) 865
PpsI GAGTC 1 cut(s) 865
Psp6I CCWGG 1 cut(s) 314
PspFI CCCAGC 2 cut(s) 103, 239
PspGI CCWGG 1 cut(s) 314
PspN4I GGNNCC 3 cut(s) 47, 313, 585
PspPI GGNCC 3 cut(s) 659, 666, 698
PstI CTGCAG 1 cut(s) 397
PstNI CAGNNNCTG 1 cut(s) 551
PsuI RGATCY 1 cut(s) 623
PvuII CAGCTG 1 cut(s) 548
RsaI GTAC 4 cut(s) 29, 227, 376, 492
RsaNI GTAC 4 cut(s) 28, 226, 375, 491
SaqAI TTAA 3 cut(s) 86, 617, 872
Sau3AI GATC 4 cut(s) 129, 449, 623, 705
Sau96I GGNCC 3 cut(s) 659, 666, 698
ScaI AGTACT 1 cut(s) 492
SchI GAGTC 1 cut(s) 866
ScrFI CCNGG 2 cut(s) 114, 316
SduI GDGCHC 1 cut(s) 314
SfaNI GCATC 4 cut(s) 13, 280, 587, 672
SfcI CTRYAG 1 cut(s) 393
SinI GGWCC 2 cut(s) 659, 698
SmlI CTYRAG 1 cut(s) 654
SmoI CTYRAG 1 cut(s) 654
SphI GCATGC 1 cut(s) 817
Sse9I AATT 2 cut(s) 466, 882
SseBI AGGCCT 1 cut(s) 649
SsiI CCGC 5 cut(s) 117, 251, 292, 555, 725
SspI AATATT 1 cut(s) 441
SspMI CTAG 3 cut(s) 321, 564, 854
StuI AGGCCT 1 cut(s) 649
StyD4I CCNGG 2 cut(s) 112, 314
StyI CCWWGG 3 cut(s) 295, 662, 894
TaaI ACNGT 4 cut(s) 200, 537, 606, 933
TaqI TCGA 5 cut(s) 414, 539, 612, 680, 908
TasI AATT 2 cut(s) 466, 882
TatI WGTACW 1 cut(s) 490
TauI GCSGC 4 cut(s) 120, 294, 557, 727
TfiI GAWTC 1 cut(s) 8
Tru1I TTAA 3 cut(s) 86, 617, 872
Tru9I TTAA 3 cut(s) 86, 617, 872
TscAI CASTG 2 cut(s) 227, 735
TseFI GTSAC 2 cut(s) 805, 858
TseI GCWGC 7 cut(s) 64, 395, 548, 551, 721, 797, 917
Tsp45I GTSAC 2 cut(s) 805, 858
TspDTI ATGAA 2 cut(s) 183, 546
TspRI CASTG 2 cut(s) 227, 735
Van91I CCANNNNNTGG 1 cut(s) 692
VpaK11BI GGWCC 2 cut(s) 659, 698
XagI CCTNNNNNAGG 1 cut(s) 654
XceI RCATGY 1 cut(s) 817
XcmI CCANNNNNNNNNTGG 1 cut(s) 274
XmnI GAANNNNTTC 2 cut(s) 442, 762
XspI CTAG 3 cut(s) 321, 564, 854
ZrmI AGTACT 1 cut(s) 492
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.