Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007397

Physical Location & Seq

Genomic Coordinates Reverse (-)

7087445 .. 7089927

Gene Structure 2483 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G20320.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGATTGGGAATCCAGTAATTCAAGTTCCATCATCACTAATGCCATCATCCTCCATGATTGCTTGTCCTCGAGTTTCACCCAATGGGGTTCCTTATCTTCCACCAAAACCTAGAACTAGGCATTTAGTGGTCAGAGCTGCATCCAATTCCGATGCTGCTCATGGTCAACCATCGTCTGATGGGGGGAAGAATCCTCTCACCGTTGTTTTGGATGTGCCCAGGAATATATGGAGACAGACTTTAAAACCTTTGAGTGATTTTGGGTTTGGTAAGAGAAGTATTTGGGAAGGTGGTGTTGGTTTGTTTATTGTCTCTGGAGCTACTCTTCTTGCTCTTAGCTGGGCTTGGTTGCGAGGTTTTCAAATGCGGTCGAAGTTTAGGAAATATCAGACTGTGTTTGAGCTTAGTCATGCTTCTGGTATTTGCACGGGAACACCGGTTAGGATCCGTGGGGTTACTGTTGGTACGATTATCCGTGTTAATCCTTCCTTGAAGAATATTGAAGCTGTTGCTGAGATAGAAGATGATAAGATTATTATCCCGAGGAATTCATTGGTTGAGGTGAATCAGTCTGGTCTTCTAATGGAAACTATGATCGACATTATGCCTAGGAATCCGATACCAGAACCTTCAGTAGGACCTCTGCATCCTGAATGTGGTAAGGAAGGTCTGATCGTTTGTGATAGGCAGACAATAAAAGGAGTGCAAGGAGTTAGTTTAGATGAATTAGTTGGAATTTTCACTCGTATTGGACGCGAAGTTGAGGCCATTGGTGTTGCCAATACGTATTCGCTTGCTGAGAGAGCTGCTTCGGTTATTGAGGAAGCAAGGCCATTGCTCAAAAAGATTCAAGCCATGGCTGAAGATGCTCAACCTTTGCTCTCTGAGTTTCGTGATAGCGGCTTGCTCAAGGAAGTTGAGTGTCTTACTCGAAGCCTTACCCAAGCTTCTGACGATTTGAGAAAGGTTAATTCGTCAATTATGACTCCTGAGAATACAGAACTCATACAGAAGTCAATCTACACTCTGGTTTATACTTTGAAGAACGTCGAGAGTATAAGCTCAGATATTCTGGGATTCACAGGAGATGAAGCCACAAGAAAAAACCTTAAACTACTCATCAAATCCCTAAGCAGGCTACTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005319 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006869 GO:0008150 GO:0008289 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009941 GO:0010876 GO:0016020 GO:0019866 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0032365 GO:0033036 GO:0042170 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0071702

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MlaD

Protein Analysis

381

Amino Acids

41.63

Weight (kDa)

8.9

Isoelectric Point (pI)

40.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MlaD	PF02470	128 - 203	6.1e-17	MlaD protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007397)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20320 AT3G20320 AT3G20320
fragaria_vesca	FvH4_1g23450 FvH4_1g23450 FvH4_1g23450
malus_domestica	MD04G1045800.v1.1 MD13G1257900.v1.1
prunus_persica	Prupe.1G198700_v2.0.a1 Prupe.1G198700_v2.0.a1 Prupe.1G198700_v2.0.a1 Prupe.1G198700_v2.0.a1 Prupe.1G198700_v2.0.a1
pyrus_communis	pycom04g03970 pycom13g27150
rosa_chinensis	RchiOBHm_Chr2g0118821
rosa_laevigata	RLG00000018423
rosa_multiflora	Rmu_sc0001814.1_g000012
rosa_roxburghii	Rroxscaffold_2G00124680
rosa_rugosa	Rorug02G0219100
rosa_samantha	Rh2AG276100 Rh2BG287900 Rh2DG283000 Rh2DG302100
rosa_wichuraiana	Rw2G021970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	756
AciI	CCGC	2 cut(s)	367, 900
AclWI	GGATC	2 cut(s)	439, 452
AcsI	RAATTY	2 cut(s)	547, 735
AcuI	CTGAAG	2 cut(s)	615, 882
AfaI	GTAC	1 cut(s)	466
AfiI	CCNNNNNNNGG	3 cut(s)	635, 656, 1134
AgeI	ACCGGT	1 cut(s)	436
AgsI	TTSAA	6 cut(s)	23, 362, 493, 503, 851, 1042
AjnI	CCWGG	1 cut(s)	218
AjuI	GAANNNNNNNTTGG	2 cut(s)	279, 311
AluBI	AGCT	8 cut(s)	137, 320, 339, 403, 506, 806, 947, 1062
AluI	AGCT	8 cut(s)	137, 320, 339, 403, 506, 806, 947, 1062
Alw26I	GTCTC	2 cut(s)	226, 316
AlwI	GGATC	2 cut(s)	439, 452
Ama87I	CYCGRG	2 cut(s)	69, 541
AoxI	GGCC	2 cut(s)	765, 830
ApeKI	GCWGC	3 cut(s)	137, 155, 806
ApoI	RAATTY	2 cut(s)	547, 735
AsiGI	ACCGGT	1 cut(s)	436
AspA2I	CCTAGG	1 cut(s)	608
AspS9I	GGNCC	1 cut(s)	638
AsuHPI	GGTGA	3 cut(s)	69, 190, 574
AvaI	CYCGRG	2 cut(s)	69, 541
AvaII	GGWCC	1 cut(s)	638
AvrII	CCTAGG	1 cut(s)	608
BaeGI	GKGCMC	1 cut(s)	219
BamHI	GGATCC	1 cut(s)	444
BarI	GAAGNNNNNNTAC	2 cut(s)	1004, 1036
BbsI	GAAGAC	1 cut(s)	569
BbvI	GCAGC	3 cut(s)	124, 142, 793
BccI	CCATC	4 cut(s)	37, 52, 173, 178
BciT130I	CCWGG	1 cut(s)	220
BcoDI	GTCTC	2 cut(s)	226, 316
BfaI	CTAG	3 cut(s)	111, 117, 609
BisI	GCNGC	4 cut(s)	138, 156, 807, 901
BlnI	CCTAGG	1 cut(s)	608
BlsI	GCNGC	4 cut(s)	139, 157, 808, 902
Bme1390I	CCNGG	1 cut(s)	220
Bme18I	GGWCC	1 cut(s)	638
BmeT110I	CYCGRG	2 cut(s)	69, 541
BmgT120I	GGNCC	1 cut(s)	638
BmiI	GGNNCC	2 cut(s)	90, 446
BmrFI	CCNGG	1 cut(s)	220
BmsI	GCATC	4 cut(s)	142, 149, 655, 856
BpiI	GAAGAC	1 cut(s)	569
BpmI	CTGGAG	1 cut(s)	336
Bpu10I	CCTNAGC	1 cut(s)	1130
BpuEI	CTTGAG	1 cut(s)	893
BsaAI	YACGTR	1 cut(s)	786
BsaBI	GATNNNNATC	1 cut(s)	536
BsaJI	CCNNGG	5 cut(s)	218, 448, 542, 608, 855
BsaWI	WCCGGW	1 cut(s)	436
Bsc4I	CCNNNNNNNGG	3 cut(s)	635, 656, 1134
Bse118I	RCCGGY	1 cut(s)	436
Bse1I	ACTGG	1 cut(s)	14
Bse3DI	GCAATG	1 cut(s)	833
Bse8I	GATNNNNATC	1 cut(s)	536
BseBI	CCWGG	1 cut(s)	220
BseDI	CCNNGG	5 cut(s)	218, 448, 542, 608, 855
BseGI	GGATG	4 cut(s)	47, 140, 217, 646
BseJI	GATNNNNATC	1 cut(s)	536
BseLI	CCNNNNNNNGG	3 cut(s)	635, 656, 1134
BseMI	GCAATG	1 cut(s)	833
BseMII	CTCAG	5 cut(s)	504, 789, 876, 981, 1077
BseNI	ACTGG	1 cut(s)	14
BseSI	GKGCMC	1 cut(s)	219
BseXI	GCAGC	3 cut(s)	124, 142, 793
BseYI	CCCAGC	1 cut(s)	339
Bsh1236I	CGCG	1 cut(s)	756
Bsh1285I	CGRYCG	1 cut(s)	371
BshFI	GGCC	2 cut(s)	767, 832
BshTI	ACCGGT	1 cut(s)	436
BsiEI	CGRYCG	1 cut(s)	371
BsiHKCI	CYCGRG	2 cut(s)	69, 541
BsiSI	CCGG	1 cut(s)	437
BslI	CCNNNNNNNGG	3 cut(s)	635, 656, 1134
BsmAI	GTCTC	2 cut(s)	226, 316
BsnI	GGCC	2 cut(s)	767, 832
BsoBI	CYCGRG	2 cut(s)	69, 541
Bsp1286I	GDGCHC	1 cut(s)	219
Bsp143I	GATC	3 cut(s)	444, 594, 672
Bsp19I	CCATGG	1 cut(s)	855
BspACI	CCGC	2 cut(s)	367, 900
BspANI	GGCC	2 cut(s)	767, 832
BspCNI	CTCAG	5 cut(s)	505, 790, 877, 982, 1076
BspFNI	CGCG	1 cut(s)	756
BspLI	GGNNCC	2 cut(s)	90, 446
BspPI	GGATC	2 cut(s)	439, 452
BsrDI	GCAATG	1 cut(s)	833
BsrFI	RCCGGY	1 cut(s)	436
BsrI	ACTGG	1 cut(s)	14
BssAI	RCCGGY	1 cut(s)	436
BssECI	CCNNGG	5 cut(s)	218, 448, 542, 608, 855
BssMI	GATC	3 cut(s)	444, 594, 672
BssT1I	CCWWGG	2 cut(s)	608, 855
Bst2UI	CCWGG	1 cut(s)	220
Bst4CI	ACNGT	3 cut(s)	202, 394, 460
Bst6I	CTCTTC	1 cut(s)	330
BstBAI	YACGTR	1 cut(s)	786
BstC8I	GCNNGC	3 cut(s)	795, 905, 1136
BstDEI	CTNAG	8 cut(s)	335, 404, 513, 798, 885, 990, 1063, 1130
BstDSI	CCRYGG	2 cut(s)	448, 855
BstENI	CCTNNNNNAGG	1 cut(s)	633
BstF5I	GGATG	4 cut(s)	47, 140, 217, 646
BstFNI	CGCG	1 cut(s)	756
BstKTI	GATC	3 cut(s)	447, 597, 675
BstMAI	GTCTC	2 cut(s)	226, 316
BstMBI	GATC	3 cut(s)	444, 594, 672
BstMCI	CGRYCG	1 cut(s)	371
BstMWI	GCNNNNNNNGC	2 cut(s)	803, 866
BstNI	CCWGG	1 cut(s)	220
BstSCI	CCNGG	1 cut(s)	218
BstSLI	GKGCMC	1 cut(s)	219
BstSNI	TACGTA	1 cut(s)	786
BstUI	CGCG	1 cut(s)	756
BstV1I	GCAGC	3 cut(s)	124, 142, 793
BstV2I	GAAGAC	1 cut(s)	569
BstX2I	RGATCY	1 cut(s)	444
BstYI	RGATCY	1 cut(s)	444
BsuRI	GGCC	2 cut(s)	767, 832
BtgI	CCRYGG	2 cut(s)	448, 855
BtsCI	GGATG	4 cut(s)	47, 140, 217, 646
Cac8I	GCNNGC	3 cut(s)	795, 905, 1136
Cfr10I	RCCGGY	1 cut(s)	436
Cfr13I	GGNCC	1 cut(s)	638
CseI	GACGC	1 cut(s)	762
Csp6I	GTAC	1 cut(s)	465
CspAI	ACCGGT	1 cut(s)	436
CviAII	CATG	4 cut(s)	55, 161, 410, 856
CviQI	GTAC	1 cut(s)	465
DdeI	CTNAG	8 cut(s)	335, 404, 513, 798, 885, 990, 1063, 1130
DpnI	GATC	3 cut(s)	446, 596, 674
DpnII	GATC	3 cut(s)	444, 594, 672
DraI	TTTAAA	1 cut(s)	243
Eam1104I	CTCTTC	1 cut(s)	330
EarI	CTCTTC	1 cut(s)	330
Eco105I	TACGTA	1 cut(s)	786
Eco130I	CCWWGG	2 cut(s)	608, 855
Eco47I	GGWCC	1 cut(s)	638
Eco57I	CTGAAG	2 cut(s)	615, 882
Eco88I	CYCGRG	2 cut(s)	69, 541
EcoNI	CCTNNNNNAGG	1 cut(s)	633
EcoO109I	RGGNCCY	1 cut(s)	638
EcoRI	GAATTC	1 cut(s)	547
EcoRII	CCWGG	1 cut(s)	218
EcoT14I	CCWWGG	2 cut(s)	608, 855
ErhI	CCWWGG	2 cut(s)	608, 855
FaeI	CATG	4 cut(s)	58, 164, 413, 859
FatI	CATG	4 cut(s)	54, 160, 409, 855
Fnu4HI	GCNGC	4 cut(s)	138, 156, 807, 901
FokI	GGATG	4 cut(s)	34, 127, 224, 633
Fsp4HI	GCNGC	4 cut(s)	138, 156, 807, 901
FspBI	CTAG	3 cut(s)	111, 117, 609
GluI	GCNGC	4 cut(s)	138, 156, 807, 901
GsaI	CCCAGC	1 cut(s)	343
GsuI	CTGGAG	1 cut(s)	336
HaeIII	GGCC	2 cut(s)	767, 832
HapII	CCGG	1 cut(s)	437
HgaI	GACGC	1 cut(s)	762
Hin1II	CATG	4 cut(s)	58, 164, 413, 859
HincII	GTYRAC	1 cut(s)	167
HindII	GTYRAC	1 cut(s)	167
HindIII	AAGCTT	1 cut(s)	945
HinfI	GANTC	7 cut(s)	10, 190, 565, 613, 847, 985, 1077
HpaII	CCGG	1 cut(s)	437
HphI	GGTGA	3 cut(s)	69, 190, 574
Hpy166II	GTNNAC	1 cut(s)	167
Hpy188I	TCNGA	9 cut(s)	134, 151, 178, 390, 618, 672, 886, 952, 1066
Hpy188III	TCNNGA	6 cut(s)	315, 541, 650, 893, 989, 1051
Hpy8I	GTNNAC	1 cut(s)	167
Hpy99I	CGWCG	1 cut(s)	1052
HpyAV	CCTTC	4 cut(s)	281, 495, 639, 659
HpyCH4III	ACNGT	3 cut(s)	202, 394, 460
HpyCH4IV	ACGT	2 cut(s)	785, 1047
HpyCH4V	TGCA	4 cut(s)	140, 426, 646, 706
HpyF10VI	GCNNNNNNNGC	2 cut(s)	803, 866
HpyF3I	CTNAG	8 cut(s)	335, 404, 513, 798, 885, 990, 1063, 1130
HpySE526I	ACGT	2 cut(s)	785, 1047
Hsp92II	CATG	4 cut(s)	58, 164, 413, 859
Kzo9I	GATC	3 cut(s)	444, 594, 672
LmnI	GCTCC	1 cut(s)	317
Lsp1109I	GCAGC	3 cut(s)	124, 142, 793
LweI	GCATC	4 cut(s)	142, 149, 655, 856
MaeI	CTAG	3 cut(s)	111, 117, 609
MaeII	ACGT	2 cut(s)	785, 1047
MaeIII	GTNAC	1 cut(s)	454
MalI	GATC	3 cut(s)	446, 596, 674
MboI	GATC	3 cut(s)	444, 594, 672
MboII	GAAGA	8 cut(s)	89, 199, 317, 505, 533, 569, 875, 1054
MflI	RGATCY	1 cut(s)	444
MhlI	GDGCHC	1 cut(s)	219
MluCI	AATT	7 cut(s)	18, 145, 547, 725, 735, 970, 978
MlyI	GAGTC	1 cut(s)	979
MmeI	TCCRAC	1 cut(s)	712
MnlI	CCTC	9 cut(s)	61, 78, 204, 347, 537, 553, 651, 757, 814
MseI	TTAA	4 cut(s)	242, 480, 969, 1110
MspI	CCGG	1 cut(s)	437
MspR9I	CCNGG	1 cut(s)	220
MvaI	CCWGG	1 cut(s)	220
MvnI	CGCG	1 cut(s)	756
MwoI	GCNNNNNNNGC	2 cut(s)	803, 866
NcoI	CCATGG	1 cut(s)	855
NdeII	GATC	3 cut(s)	444, 594, 672
NlaIII	CATG	4 cut(s)	58, 164, 413, 859
NlaIV	GGNNCC	2 cut(s)	90, 446
PaeR7I	CTCGAG	1 cut(s)	69
PfeI	GAWTC	6 cut(s)	10, 190, 565, 613, 847, 1077
PinAI	ACCGGT	1 cut(s)	436
PkrI	GCNGC	4 cut(s)	139, 157, 808, 902
PleI	GAGTC	1 cut(s)	979
PpsI	GAGTC	1 cut(s)	979
Ppu21I	YACGTR	1 cut(s)	786
PpuMI	RGGWCCY	1 cut(s)	638
Psp5II	RGGWCCY	1 cut(s)	638
Psp6I	CCWGG	1 cut(s)	218
PspFI	CCCAGC	1 cut(s)	339
PspGI	CCWGG	1 cut(s)	218
PspN4I	GGNNCC	2 cut(s)	90, 446
PspPI	GGNCC	1 cut(s)	638
PspPPI	RGGWCCY	1 cut(s)	638
PspXI	VCTCGAGB	1 cut(s)	69
PsrI	GAACNNNNNNTAC	2 cut(s)	9, 41
PsuI	RGATCY	1 cut(s)	444
RsaI	GTAC	1 cut(s)	466
RsaNI	GTAC	1 cut(s)	465
SaqAI	TTAA	4 cut(s)	242, 480, 969, 1110
SatI	GCNGC	4 cut(s)	138, 156, 807, 901
Sau3AI	GATC	3 cut(s)	444, 594, 672
Sau96I	GGNCC	1 cut(s)	638
SchI	GAGTC	1 cut(s)	979
ScrFI	CCNGG	1 cut(s)	220
SduI	GDGCHC	1 cut(s)	219
SfaNI	GCATC	4 cut(s)	142, 149, 655, 856
Sfr274I	CTCGAG	1 cut(s)	69
SinI	GGWCC	1 cut(s)	638
SlaI	CTCGAG	1 cut(s)	69
SmlI	CTYRAG	2 cut(s)	69, 908
SmoI	CTYRAG	2 cut(s)	69, 908
SnaBI	TACGTA	1 cut(s)	786
Sse9I	AATT	7 cut(s)	18, 145, 547, 725, 735, 970, 978
SsiI	CCGC	2 cut(s)	367, 900
SspI	AATATT	1 cut(s)	499
SspMI	CTAG	3 cut(s)	111, 117, 609
StyD4I	CCNGG	1 cut(s)	218
StyI	CCWWGG	2 cut(s)	608, 855
TaaI	ACNGT	3 cut(s)	202, 394, 460
TaiI	ACGT	2 cut(s)	788, 1050
TaqI	TCGA	5 cut(s)	70, 371, 597, 931, 1050
TasI	AATT	7 cut(s)	18, 145, 547, 725, 735, 970, 978
TauI	GCSGC	1 cut(s)	903
TfiI	GAWTC	6 cut(s)	10, 190, 565, 613, 847, 1077
Tru1I	TTAA	4 cut(s)	242, 480, 969, 1110
Tru9I	TTAA	4 cut(s)	242, 480, 969, 1110
TseI	GCWGC	3 cut(s)	137, 155, 806
TspDTI	ATGAA	3 cut(s)	540, 738, 1104
TspGWI	ACGGA	2 cut(s)	437, 464
VpaK11BI	GGWCC	1 cut(s)	638
XagI	CCTNNNNNAGG	1 cut(s)	633
XapI	RAATTY	2 cut(s)	547, 735
XhoI	CTCGAG	1 cut(s)	69
XmaJI	CCTAGG	1 cut(s)	608
XspI	CTAG	3 cut(s)	111, 117, 609

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.