Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0007397

Physical Location & Seq

Genomic Coordinates Reverse (-)

19104911 .. 19109305

Gene Structure 4395 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G198700.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGGTCTCAACGTGCCCCACGATGTTATCTTTGTCGCGCATTTCTTCAAATAGCTTGCCTTATCTTCCTTCAAGATCACCGGCGAAAGTAACCCGGATAAGAGCTACATCTGCGGATACAGGACACAGTCAACCACCCTCCTCTTCTTCGGAAAAAAAGAATCCACTTGCAGTTGTTTGGGATGCTCCTCGAACTATTTGGAAGGCAACATTACGACCATTGAGTGATTTTGGGTTTGGTCGTAGAAGCATATGGGAAGGTGGGGTGGGGTTGTTTCTAGTTTCTGGTGCAGTTCTACTTGCACTCAGTTTGGCCTGGTTGAGGGGTTATCAATTGCGGTCTAGATTCAGGAAATACTTTGCTGTGTTTGAGTTTACTCAAGCTTGTGGAATATCCACTGGAACACCAGTGAGGATTAGAGGGGTCAATGTCGGCAGTGTTGTCCGTGTTAACTCTTCCTTGGAAAGTATTGAAGCAGTTGTTGAGGTTGAAGATGATAAAACTGTGATACCTCGAAACTCACTGATTGAGGTAAACCAGTCAGGTCTTCTCATGGAAACTAGAATCGACATTACACCTAGATATCCAATTCCCAATATTGCAGTTGGGCCTCTTCATCCTGAATGTGACAAAGAAGGTCTTATTGTATGCGATAGGCAAAAGATGAAAGGATATCAGGGGGTAAGCTTAGATGCATTGGTAGGTATATTCACTCGTCTTGGACGTGAAGTGGAGGAAATCGGTATTGCGAATACGTATTCACTTGTTGAACGAGTTGCTTCTGTTGTAGAAGAGGCAAAGCCACTGCTTATAAAGATACAAGCCATGGCTGAAGATGTTCAACCTTTGCTGGCTGAGTTTCGTGATAGTGGTCTGCTAAAGGAAGTTGACAGTTTGACCAGAAGCCTTACGCAAGTTTCGGAGGATGTGAGAAAGGTGCATTCATCTATTATGACCCCTGAGAATACAGAACTGATTCAGAAGTCCGTGTACACTTTGATTTTCACCTTGAAGAATATTGAGAATTTAAGCTCTGATATTCTTGGATTTACGGGTGATGAAGCTACAAGAAAAAATTTGAAGTTGCTGATCAAGTCTCTCAGCAGGCTATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005319 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006869 GO:0008150 GO:0008289 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009941 GO:0010876 GO:0016020 GO:0019866 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0032365 GO:0033036 GO:0042170 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0071702

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MlaD

Protein Analysis

372

Amino Acids

40.9

Weight (kDa)

8.96

Isoelectric Point (pI)

42.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007397)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20320 AT3G20320 AT3G20320
fragaria_vesca	FvH4_1g23450 FvH4_1g23450 FvH4_1g23450
malus_domestica	MD04G1045800.v1.1 MD13G1257900.v1.1
prunus_persica	Prupe.1G198700_v2.0.a1 Prupe.1G198700_v2.0.a1 Prupe.1G198700_v2.0.a1 Prupe.1G198700_v2.0.a1 Prupe.1G198700_v2.0.a1
pyrus_communis	pycom04g03970 pycom13g27150
rosa_chinensis	RchiOBHm_Chr2g0118821
rosa_laevigata	RLG00000018423
rosa_multiflora	Rmu_sc0001814.1_g000012
rosa_roxburghii	Rroxscaffold_2G00124680
rosa_rugosa	Rorug02G0219100
rosa_samantha	Rh2AG276100 Rh2BG287900 Rh2DG283000 Rh2DG302100
rosa_wichuraiana	Rw2G021970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	812
AccII	CGCG	1 cut(s)	37
AciI	CCGC	2 cut(s)	113, 337
AcsI	RAATTY	2 cut(s)	1024, 1075
AcuI	CTGAAG	1 cut(s)	852
AfaI	GTAC	1 cut(s)	992
AfiI	CCNNNNNNNGG	1 cut(s)	321
AgsI	TTSAA	8 cut(s)	48, 72, 473, 491, 770, 842, 1012, 1081
AjiI	CACGTC	1 cut(s)	725
AjnI	CCWGG	1 cut(s)	314
AluBI	AGCT	6 cut(s)	54, 104, 383, 687, 1032, 1064
AluI	AGCT	6 cut(s)	54, 104, 383, 687, 1032, 1064
Alw26I	GTCTC	2 cut(s)	10, 1101
AoxI	GGCC	2 cut(s)	312, 608
ApoI	RAATTY	2 cut(s)	1024, 1075
Asp700I	GAANNNNTTC	2 cut(s)	837, 975
AspLEI	GCGC	1 cut(s)	39
AspS9I	GGNCC	1 cut(s)	608
AsuC2I	CCSGG	1 cut(s)	94
AsuHPI	GGTGA	3 cut(s)	69, 997, 1067
BaeGI	GKGCMC	1 cut(s)	17
BarI	GAAGNNNNNNTAC	2 cut(s)	974, 1006
BbsI	GAAGAC	1 cut(s)	539
BciT130I	CCWGG	1 cut(s)	316
BciVI	GTATCC	1 cut(s)	109
BclI	TGATCA	1 cut(s)	1089
BcnI	CCSGG	1 cut(s)	94
BcoDI	GTCTC	2 cut(s)	10, 1101
BfaI	CTAG	4 cut(s)	278, 342, 561, 579
BfuI	GTATCC	1 cut(s)	109
Bme1390I	CCNGG	2 cut(s)	94, 316
BmgBI	CACGTC	1 cut(s)	725
BmgT120I	GGNCC	1 cut(s)	608
BmrFI	CCNGG	2 cut(s)	94, 316
BmsI	GCATC	2 cut(s)	172, 682
BpiI	GAAGAC	1 cut(s)	539
BpuEI	CTTGAG	1 cut(s)	363
BpuMI	CCSGG	1 cut(s)	94
BsaAI	YACGTR	1 cut(s)	756
BsaI	GGTCTC	1 cut(s)	10
BsaJI	CCNNGG	2 cut(s)	459, 825
Bsc4I	CCNNNNNNNGG	1 cut(s)	321
Bse118I	RCCGGY	1 cut(s)	79
Bse1I	ACTGG	3 cut(s)	403, 407, 538
BseBI	CCWGG	1 cut(s)	316
BseDI	CCNNGG	2 cut(s)	459, 825
BseGI	GGATG	3 cut(s)	187, 616, 931
BseLI	CCNNNNNNNGG	1 cut(s)	321
BseMII	CTCAG	4 cut(s)	319, 846, 951, 1114
BseNI	ACTGG	3 cut(s)	403, 407, 538
BseRI	GAGGAG	2 cut(s)	130, 177
BseSI	GKGCMC	1 cut(s)	17
BsgI	GTGCAG	1 cut(s)	309
Bsh1236I	CGCG	1 cut(s)	37
BshFI	GGCC	2 cut(s)	314, 610
BsiSI	CCGG	2 cut(s)	80, 94
BslI	CCNNNNNNNGG	1 cut(s)	321
BsmAI	GTCTC	2 cut(s)	10, 1101
BsmI	GAATGC	1 cut(s)	940
BsnI	GGCC	2 cut(s)	314, 610
Bso31I	GGTCTC	1 cut(s)	10
Bsp1286I	GDGCHC	1 cut(s)	17
Bsp1407I	TGTACA	1 cut(s)	990
Bsp143I	GATC	2 cut(s)	74, 1089
Bsp19I	CCATGG	1 cut(s)	825
BspACI	CCGC	2 cut(s)	113, 337
BspANI	GGCC	2 cut(s)	314, 610
BspCNI	CTCAG	4 cut(s)	318, 847, 952, 1113
BspFNI	CGCG	1 cut(s)	37
BspTNI	GGTCTC	1 cut(s)	10
BsrFI	RCCGGY	1 cut(s)	79
BsrGI	TGTACA	1 cut(s)	990
BsrI	ACTGG	3 cut(s)	403, 407, 538
BssAI	RCCGGY	1 cut(s)	79
BssECI	CCNNGG	2 cut(s)	459, 825
BssMI	GATC	2 cut(s)	74, 1089
BssT1I	CCWWGG	2 cut(s)	459, 825
Bst2UI	CCWGG	1 cut(s)	316
Bst4CI	ACNGT	3 cut(s)	128, 505, 893
Bst6I	CTCTTC	4 cut(s)	148, 460, 618, 786
BstAUI	TGTACA	1 cut(s)	990
BstBAI	YACGTR	1 cut(s)	756
BstC8I	GCNNGC	3 cut(s)	56, 852, 1106
BstDEI	CTNAG	5 cut(s)	305, 688, 855, 960, 1100
BstDSI	CCRYGG	1 cut(s)	825
BstENI	CCTNNNNNAGG	1 cut(s)	319
BstF5I	GGATG	3 cut(s)	187, 616, 931
BstFNI	CGCG	1 cut(s)	37
BstHHI	GCGC	1 cut(s)	39
BstKTI	GATC	2 cut(s)	77, 1092
BstMAI	GTCTC	2 cut(s)	10, 1101
BstMBI	GATC	2 cut(s)	74, 1089
BstMWI	GCNNNNNNNGC	1 cut(s)	110
BstNI	CCWGG	1 cut(s)	316
BstSCI	CCNGG	2 cut(s)	92, 314
BstSLI	GKGCMC	1 cut(s)	17
BstSNI	TACGTA	1 cut(s)	756
BstUI	CGCG	1 cut(s)	37
BstV2I	GAAGAC	1 cut(s)	539
BsuI	GTATCC	1 cut(s)	109
BsuRI	GGCC	2 cut(s)	314, 610
BtgI	CCRYGG	1 cut(s)	825
BtrI	CACGTC	1 cut(s)	725
BtsCI	GGATG	3 cut(s)	187, 616, 931
BtsI	GCAGTG	2 cut(s)	442, 803
BtsIMutI	CAGTG	5 cut(s)	396, 414, 442, 521, 803
Cac8I	GCNNGC	3 cut(s)	56, 852, 1106
CfoI	GCGC	1 cut(s)	39
Cfr10I	RCCGGY	1 cut(s)	79
Cfr13I	GGNCC	1 cut(s)	608
Csp6I	GTAC	1 cut(s)	991
CviAII	CATG	2 cut(s)	553, 826
CviQI	GTAC	1 cut(s)	991
DdeI	CTNAG	5 cut(s)	305, 688, 855, 960, 1100
DpnI	GATC	2 cut(s)	76, 1091
DpnII	GATC	2 cut(s)	74, 1089
Eam1104I	CTCTTC	4 cut(s)	148, 460, 618, 786
EarI	CTCTTC	4 cut(s)	148, 460, 618, 786
Eco105I	TACGTA	1 cut(s)	756
Eco130I	CCWWGG	2 cut(s)	459, 825
Eco31I	GGTCTC	1 cut(s)	10
Eco32I	GATATC	2 cut(s)	584, 674
Eco57I	CTGAAG	1 cut(s)	852
EcoNI	CCTNNNNNAGG	1 cut(s)	319
EcoRII	CCWGG	1 cut(s)	314
EcoRV	GATATC	2 cut(s)	584, 674
EcoT14I	CCWWGG	2 cut(s)	459, 825
EcoT22I	ATGCAT	1 cut(s)	697
ErhI	CCWWGG	2 cut(s)	459, 825
FaeI	CATG	2 cut(s)	556, 829
FaiI	YATR	8 cut(s)	251, 253, 554, 649, 707, 812, 827, 953
FalI	AAGNNNNNCTT	2 cut(s)	624, 656
FatI	CATG	2 cut(s)	552, 825
FauNDI	CATATG	1 cut(s)	251
FbaI	TGATCA	1 cut(s)	1089
FokI	GGATG	3 cut(s)	194, 603, 938
FspBI	CTAG	4 cut(s)	278, 342, 561, 579
GlaI	GCGC	1 cut(s)	38
HaeIII	GGCC	2 cut(s)	314, 610
HapII	CCGG	2 cut(s)	80, 94
HhaI	GCGC	1 cut(s)	39
Hin1II	CATG	2 cut(s)	556, 829
Hin6I	GCGC	1 cut(s)	37
HinP1I	GCGC	1 cut(s)	37
HincII	GTYRAC	3 cut(s)	131, 451, 889
HindII	GTYRAC	3 cut(s)	131, 451, 889
HindIII	AAGCTT	2 cut(s)	381, 685
HinfI	GANTC	4 cut(s)	160, 345, 564, 976
HpaI	GTTAAC	1 cut(s)	451
HpaII	CCGG	2 cut(s)	80, 94
HphI	GGTGA	3 cut(s)	69, 997, 1067
Hpy166II	GTNNAC	7 cut(s)	131, 375, 451, 535, 889, 991, 993
Hpy188I	TCNGA	4 cut(s)	151, 922, 981, 1036
Hpy188III	TCNNGA	5 cut(s)	72, 342, 349, 620, 863
Hpy8I	GTNNAC	7 cut(s)	131, 375, 451, 535, 889, 991, 993
HpyAV	CCTTC	4 cut(s)	78, 196, 251, 629
HpyCH4III	ACNGT	3 cut(s)	128, 505, 893
HpyCH4IV	ACGT	3 cut(s)	11, 724, 755
HpyCH4V	TGCA	6 cut(s)	170, 290, 302, 602, 695, 940
HpyF10VI	GCNNNNNNNGC	1 cut(s)	110
HpyF3I	CTNAG	5 cut(s)	305, 688, 855, 960, 1100
HpySE526I	ACGT	3 cut(s)	11, 724, 755
Hsp92II	CATG	2 cut(s)	556, 829
HspAI	GCGC	1 cut(s)	37
Ksp22I	TGATCA	1 cut(s)	1089
KspAI	GTTAAC	1 cut(s)	451
Kzo9I	GATC	2 cut(s)	74, 1089
LmnI	GCTCC	1 cut(s)	190
LweI	GCATC	2 cut(s)	172, 682
MaeI	CTAG	4 cut(s)	278, 342, 561, 579
MaeII	ACGT	3 cut(s)	11, 724, 755
MaeIII	GTNAC	2 cut(s)	88, 626
MalI	GATC	2 cut(s)	76, 1091
MboI	GATC	2 cut(s)	74, 1089
MfeI	CAATTG	1 cut(s)	332
MhlI	GDGCHC	1 cut(s)	17
MluCI	AATT	4 cut(s)	332, 588, 1024, 1075
Mph1103I	ATGCAT	1 cut(s)	697
MroXI	GAANNNNTTC	2 cut(s)	837, 975
MseI	TTAA	2 cut(s)	450, 1028
MspI	CCGG	2 cut(s)	80, 94
MspR9I	CCNGG	2 cut(s)	94, 316
MunI	CAATTG	1 cut(s)	332
Mva1269I	GAATGC	1 cut(s)	940
MvaI	CCWGG	1 cut(s)	316
MvnI	CGCG	1 cut(s)	37
MwoI	GCNNNNNNNGC	1 cut(s)	110
NciI	CCSGG	1 cut(s)	94
NcoI	CCATGG	1 cut(s)	825
NdeI	CATATG	1 cut(s)	251
NdeII	GATC	2 cut(s)	74, 1089
NlaIII	CATG	2 cut(s)	556, 829
NmuCI	GTSAC	1 cut(s)	626
NsiI	ATGCAT	1 cut(s)	697
PcsI	WCGNNNNNNNCGW	2 cut(s)	17, 721
PctI	GAATGC	1 cut(s)	940
PdmI	GAANNNNTTC	2 cut(s)	837, 975
PfeI	GAWTC	4 cut(s)	160, 345, 564, 976
PflFI	GACNNNGTC	1 cut(s)	126
Ppu21I	YACGTR	1 cut(s)	756
PsiI	TTATAA	1 cut(s)	812
Psp6I	CCWGG	1 cut(s)	314
PspGI	CCWGG	1 cut(s)	314
PspPI	GGNCC	1 cut(s)	608
PsyI	GACNNNGTC	1 cut(s)	126
RsaI	GTAC	1 cut(s)	992
RsaNI	GTAC	1 cut(s)	991
SaqAI	TTAA	2 cut(s)	450, 1028
Sau3AI	GATC	2 cut(s)	74, 1089
Sau96I	GGNCC	1 cut(s)	608
ScrFI	CCNGG	2 cut(s)	94, 316
SduI	GDGCHC	1 cut(s)	17
SfaNI	GCATC	2 cut(s)	172, 682
SgrAI	CRCCGGYG	1 cut(s)	79
SmlI	CTYRAG	1 cut(s)	378
SmoI	CTYRAG	1 cut(s)	378
SnaBI	TACGTA	1 cut(s)	756
Sse9I	AATT	4 cut(s)	332, 588, 1024, 1075
SsiI	CCGC	2 cut(s)	113, 337
SspI	AATATT	2 cut(s)	598, 1018
SspMI	CTAG	4 cut(s)	278, 342, 561, 579
StyD4I	CCNGG	2 cut(s)	92, 314
StyI	CCWWGG	2 cut(s)	459, 825
TaaI	ACNGT	3 cut(s)	128, 505, 893
TaiI	ACGT	3 cut(s)	14, 727, 758
TaqI	TCGA	3 cut(s)	190, 514, 567
TasI	AATT	4 cut(s)	332, 588, 1024, 1075
TatI	WGTACW	1 cut(s)	990
TfiI	GAWTC	4 cut(s)	160, 345, 564, 976
Tru1I	TTAA	2 cut(s)	450, 1028
Tru9I	TTAA	2 cut(s)	450, 1028
TscAI	CASTG	5 cut(s)	403, 414, 442, 528, 810
TseFI	GTSAC	1 cut(s)	626
Tsp45I	GTSAC	1 cut(s)	626
TspDTI	ATGAA	4 cut(s)	605, 680, 933, 1074
TspGWI	ACGGA	2 cut(s)	434, 976
TspRI	CASTG	5 cut(s)	403, 414, 442, 528, 810
Tth111I	GACNNNGTC	1 cut(s)	126
XagI	CCTNNNNNAGG	1 cut(s)	319
XapI	RAATTY	2 cut(s)	1024, 1075
XbaI	TCTAGA	1 cut(s)	341
XmnI	GAANNNNTTC	2 cut(s)	837, 975
XspI	CTAG	4 cut(s)	278, 342, 561, 579
Zsp2I	ATGCAT	1 cut(s)	697

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.