Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0007397

Physical Location & Seq

Genomic Coordinates Forward (+)

30578295 .. 30582360

Gene Structure 4066 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1257900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGTGTAAGCAAAACCCATTTCTACATTGTTCTAGGTTGTACCCAATCCGATACCGAGCGCTAAGTGCTACTCATAGATACTGCTGGGAGTGTTTGTTTTCTGGATTGTATCAAAAGATGATAGGGAATTTGTTGGCCCAAGTGTCGACATGCCCCACGCTGTTATCTTTGTCGTGCATTTCTTCGAATAGTTTGCCGTATCTTCCTTCAAGACCACCAACAAAAGTAACCCGGATAAGAGCTACATCGGCCGACACAGGACACAGCCAACAATCCTCCTCTTCTTCTGAGAAAAATAATCCACTTGCAGTTGTTTTGGATGTCCCTCAGACTATTTGGAGGCAAACATTACGACCGTTGAGTGAGTTTGGCTTTGGTTGTAAAAGTATATGGGAAGGTGGGGTAGGTAAAAGTATATGGGAAGGTGGGGTAGGATTGTTTCTAGTTTCAGGTGCAGTTCTTGTTGCACTCAACTTGGCTTGGTTACGGGGGTATCAATTGAGCTCTAGATTCAGGAAGTACTTTGCTGTGTTTGAGTTCACTCAAGCTTGTGGAATATCCACTGGAACGCCAGTGAGGATTATAGGGGTCACTGTCGGCAATGTTATCTGTGTTAACTCTTCTTTGGAAAGTATTGAAGCTGTTGTTGAGGTTGAAGATGATAAAACTGTCATACCTCGAAATGCACTGATTGAGGTAAACCAGTCGGGTCTTCTCAGGGAAACTAAAATTGACATTACACCTAGAGACCCACTTCTGAATATTTCAGTTGGGCCTCTTCATCCTGAATGTAGCAAAGAAGGTCTGATTGTATACGATAGACAAAAGATGAGAGGACATCAAGGTGTGATTTTAGATGCATTGGTAGGTATATTTACCCGTCTTGGACGTGAAGTGGAGGAGATTGGTATAGTAAACACGTATTCACTCGCTGAACGAGTTGCTTCTGTGATAGAAGAGGCAAAGCCACTGCTTACACTGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005319 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006869 GO:0008150 GO:0008289 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009941 GO:0010876 GO:0016020 GO:0019866 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0032365 GO:0033036 GO:0042170 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0071702

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MlaD

Protein Analysis

329

Amino Acids

36.1

Weight (kDa)

8.66

Isoelectric Point (pI)

41.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MlaD	PF02470	173 - 248	5.5e-13	MlaD protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007397)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20320 AT3G20320 AT3G20320
fragaria_vesca	FvH4_1g23450 FvH4_1g23450 FvH4_1g23450
malus_domestica	MD04G1045800.v1.1 MD13G1257900.v1.1
prunus_persica	Prupe.1G198700_v2.0.a1 Prupe.1G198700_v2.0.a1 Prupe.1G198700_v2.0.a1 Prupe.1G198700_v2.0.a1 Prupe.1G198700_v2.0.a1
pyrus_communis	pycom04g03970 pycom13g27150
rosa_chinensis	RchiOBHm_Chr2g0118821
rosa_laevigata	RLG00000018423
rosa_multiflora	Rmu_sc0001814.1_g000012
rosa_roxburghii	Rroxscaffold_2G00124680
rosa_rugosa	Rorug02G0219100
rosa_samantha	Rh2AG276100 Rh2BG287900 Rh2DG283000 Rh2DG302100
rosa_wichuraiana	Rw2G021970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	146, 813
AcoI	YGGCCR	1 cut(s)	249
AcsI	RAATTY	1 cut(s)	127
AfaI	GTAC	2 cut(s)	41, 521
AfeI	AGCGCT	1 cut(s)	60
AflIII	ACRYGT	1 cut(s)	918
AgsI	TTSAA	3 cut(s)	210, 638, 656
AjiI	CACGTC	1 cut(s)	890
AleI	CACNNNNGTG	1 cut(s)	982
AluBI	AGCT	4 cut(s)	242, 504, 548, 641
AluI	AGCT	4 cut(s)	242, 504, 548, 641
Alw21I	GWGCWC	1 cut(s)	506
Alw26I	GTCTC	1 cut(s)	741
Aor51HI	AGCGCT	1 cut(s)	60
AoxI	GGCC	3 cut(s)	135, 249, 773
ApoI	RAATTY	1 cut(s)	127
AspLEI	GCGC	1 cut(s)	61
AspS9I	GGNCC	2 cut(s)	136, 773
AsuC2I	CCSGG	1 cut(s)	232
AsuII	TTCGAA	1 cut(s)	185
BaeI	ACNNNNGTAYC	2 cut(s)	476, 509
BanII	GRGCYC	1 cut(s)	506
BbsI	GAAGAC	1 cut(s)	704
Bbv12I	GWGCWC	1 cut(s)	506
BceAI	ACGGC	1 cut(s)	181
BcgI	CGANNNNNNTGC	2 cut(s)	175, 209
BcnI	CCSGG	1 cut(s)	232
BcoDI	GTCTC	1 cut(s)	741
BfaI	CTAG	4 cut(s)	33, 443, 507, 744
BfoI	RGCGCY	1 cut(s)	62
BmcAI	AGTACT	1 cut(s)	521
Bme1390I	CCNGG	1 cut(s)	232
BmgBI	CACGTC	1 cut(s)	890
BmgT120I	GGNCC	2 cut(s)	136, 773
BmrFI	CCNGG	1 cut(s)	232
BmsI	GCATC	1 cut(s)	847
BpiI	GAAGAC	1 cut(s)	704
Bpu14I	TTCGAA	1 cut(s)	185
BpuEI	CTTGAG	1 cut(s)	528
BpuMI	CCSGG	1 cut(s)	232
BsaAI	YACGTR	1 cut(s)	921
BsaI	GGTCTC	1 cut(s)	741
BsaXI	ACNNNNNCTCC	2 cut(s)	80, 110
Bse1I	ACTGG	4 cut(s)	568, 572, 703, 984
Bse3DI	GCAATG	1 cut(s)	607
BseGI	GGATG	2 cut(s)	325, 781
BseMI	GCAATG	1 cut(s)	607
BseMII	CTCAG	3 cut(s)	279, 341, 730
BseNI	ACTGG	4 cut(s)	568, 572, 703, 984
BseRI	GAGGAG	2 cut(s)	268, 914
BseX3I	CGGCCG	1 cut(s)	249
BseYI	CCCAGC	1 cut(s)	84
BsgI	GTGCAG	1 cut(s)	474
Bsh1285I	CGRYCG	2 cut(s)	252, 356
BshFI	GGCC	3 cut(s)	137, 251, 775
BsiEI	CGRYCG	2 cut(s)	252, 356
BsiHKAI	GWGCWC	1 cut(s)	506
BsiSI	CCGG	1 cut(s)	232
BslFI	GGGAC	1 cut(s)	308
BsmAI	GTCTC	1 cut(s)	741
BsmFI	GGGAC	1 cut(s)	308
BsnI	GGCC	3 cut(s)	137, 251, 775
Bso31I	GGTCTC	1 cut(s)	741
Bsp119I	TTCGAA	1 cut(s)	185
Bsp1286I	GDGCHC	1 cut(s)	506
BspANI	GGCC	3 cut(s)	137, 251, 775
BspCNI	CTCAG	3 cut(s)	280, 340, 729
BspT104I	TTCGAA	1 cut(s)	185
BspTNI	GGTCTC	1 cut(s)	741
BsrDI	GCAATG	1 cut(s)	607
BsrI	ACTGG	4 cut(s)	568, 572, 703, 984
BssNAI	GTATAC	1 cut(s)	814
Bst1107I	GTATAC	1 cut(s)	814
Bst4CI	ACNGT	3 cut(s)	357, 595, 670
Bst6I	CTCTTC	4 cut(s)	286, 625, 783, 951
BstBAI	YACGTR	1 cut(s)	921
BstBI	TTCGAA	1 cut(s)	185
BstDEI	CTNAG	4 cut(s)	62, 288, 327, 716
BstF5I	GGATG	2 cut(s)	325, 781
BstH2I	RGCGCY	1 cut(s)	62
BstHHI	GCGC	1 cut(s)	61
BstMAI	GTCTC	1 cut(s)	741
BstMCI	CGRYCG	2 cut(s)	252, 356
BstMWI	GCNNNNNNNGC	2 cut(s)	65, 248
BstNSI	RCATGY	1 cut(s)	153
BstSCI	CCNGG	1 cut(s)	230
BstV2I	GAAGAC	1 cut(s)	704
BstZ17I	GTATAC	1 cut(s)	814
BstZI	CGGCCG	1 cut(s)	249
BsuRI	GGCC	3 cut(s)	137, 251, 775
BtrI	CACGTC	1 cut(s)	890
BtsCI	GGATG	2 cut(s)	325, 781
BtsI	GCAGTG	1 cut(s)	968
BtsIMutI	CAGTG	6 cut(s)	561, 579, 591, 686, 968, 977
CfoI	GCGC	1 cut(s)	61
Cfr13I	GGNCC	2 cut(s)	136, 773
Csp6I	GTAC	2 cut(s)	40, 520
CviAII	CATG	1 cut(s)	150
CviQI	GTAC	2 cut(s)	40, 520
DdeI	CTNAG	4 cut(s)	62, 288, 327, 716
EaeI	YGGCCR	1 cut(s)	249
EagI	CGGCCG	1 cut(s)	249
Eam1104I	CTCTTC	4 cut(s)	286, 625, 783, 951
EarI	CTCTTC	4 cut(s)	286, 625, 783, 951
Ecl136II	GAGCTC	1 cut(s)	504
EclXI	CGGCCG	1 cut(s)	249
Eco24I	GRGCYC	1 cut(s)	506
Eco31I	GGTCTC	1 cut(s)	741
Eco47III	AGCGCT	1 cut(s)	60
Eco52I	CGGCCG	1 cut(s)	249
Eco53kI	GAGCTC	1 cut(s)	504
EcoICRI	GAGCTC	1 cut(s)	504
EcoT22I	ATGCAT	1 cut(s)	862
EcoT38I	GRGCYC	1 cut(s)	506
FaeI	CATG	1 cut(s)	153
FaqI	GGGAC	1 cut(s)	308
FatI	CATG	1 cut(s)	149
FblI	GTMKAC	2 cut(s)	146, 813
FokI	GGATG	2 cut(s)	332, 768
FriOI	GRGCYC	1 cut(s)	506
FspBI	CTAG	4 cut(s)	33, 443, 507, 744
GlaI	GCGC	1 cut(s)	60
GsaI	CCCAGC	1 cut(s)	88
HaeII	RGCGCY	1 cut(s)	62
HaeIII	GGCC	3 cut(s)	137, 251, 775
HapII	CCGG	1 cut(s)	232
HhaI	GCGC	1 cut(s)	61
Hin1II	CATG	1 cut(s)	153
Hin6I	GCGC	1 cut(s)	59
HinP1I	GCGC	1 cut(s)	59
HincII	GTYRAC	2 cut(s)	147, 616
HindII	GTYRAC	2 cut(s)	147, 616
HindIII	AAGCTT	1 cut(s)	546
HinfI	GANTC	1 cut(s)	510
HpaI	GTTAAC	1 cut(s)	616
HpaII	CCGG	1 cut(s)	232
Hpy166II	GTNNAC	6 cut(s)	147, 540, 616, 700, 814, 916
Hpy188I	TCNGA	5 cut(s)	50, 289, 330, 759, 807
Hpy188III	TCNNGA	5 cut(s)	102, 210, 507, 514, 785
Hpy8I	GTNNAC	6 cut(s)	147, 540, 616, 700, 814, 916
HpyAV	CCTTC	4 cut(s)	216, 389, 416, 794
HpyCH4III	ACNGT	3 cut(s)	357, 595, 670
HpyCH4IV	ACGT	2 cut(s)	889, 920
HpyCH4V	TGCA	6 cut(s)	177, 308, 455, 467, 686, 860
HpyF10VI	GCNNNNNNNGC	2 cut(s)	65, 248
HpyF3I	CTNAG	4 cut(s)	62, 288, 327, 716
HpySE526I	ACGT	2 cut(s)	889, 920
Hsp92II	CATG	1 cut(s)	153
HspAI	GCGC	1 cut(s)	59
KspAI	GTTAAC	1 cut(s)	616
LweI	GCATC	1 cut(s)	847
MaeI	CTAG	4 cut(s)	33, 443, 507, 744
MaeII	ACGT	2 cut(s)	889, 920
MaeIII	GTNAC	3 cut(s)	226, 483, 589
MboII	GAAGA	9 cut(s)	174, 194, 273, 276, 612, 668, 704, 770, 968
MfeI	CAATTG	1 cut(s)	497
MhlI	GDGCHC	1 cut(s)	506
MluCI	AATT	3 cut(s)	127, 497, 729
Mph1103I	ATGCAT	1 cut(s)	862
MseI	TTAA	1 cut(s)	615
MslI	CAYNNNNRTG	2 cut(s)	843, 982
MspI	CCGG	1 cut(s)	232
MspR9I	CCNGG	1 cut(s)	232
MunI	CAATTG	1 cut(s)	497
MwoI	GCNNNNNNNGC	2 cut(s)	65, 248
NciI	CCSGG	1 cut(s)	232
NlaIII	CATG	1 cut(s)	153
NmuCI	GTSAC	1 cut(s)	589
NsiI	ATGCAT	1 cut(s)	862
NspI	RCATGY	1 cut(s)	153
NspV	TTCGAA	1 cut(s)	185
OliI	CACNNNNGTG	1 cut(s)	982
PfeI	GAWTC	1 cut(s)	510
Ppu21I	YACGTR	1 cut(s)	921
Psp124BI	GAGCTC	1 cut(s)	506
PspFI	CCCAGC	1 cut(s)	84
PspPI	GGNCC	2 cut(s)	136, 773
RsaI	GTAC	2 cut(s)	41, 521
RsaNI	GTAC	2 cut(s)	40, 520
RseI	CAYNNNNRTG	2 cut(s)	843, 982
SacI	GAGCTC	1 cut(s)	506
SalI	GTCGAC	1 cut(s)	145
SaqAI	TTAA	1 cut(s)	615
Sau96I	GGNCC	2 cut(s)	136, 773
ScaI	AGTACT	1 cut(s)	521
ScrFI	CCNGG	1 cut(s)	232
SduI	GDGCHC	1 cut(s)	506
SfaNI	GCATC	1 cut(s)	847
SfuI	TTCGAA	1 cut(s)	185
SmiMI	CAYNNNNRTG	2 cut(s)	843, 982
SmlI	CTYRAG	1 cut(s)	543
SmoI	CTYRAG	1 cut(s)	543
Sse9I	AATT	3 cut(s)	127, 497, 729
SspI	AATATT	1 cut(s)	763
SspMI	CTAG	4 cut(s)	33, 443, 507, 744
SstI	GAGCTC	1 cut(s)	506
StyD4I	CCNGG	1 cut(s)	230
TaaI	ACNGT	3 cut(s)	357, 595, 670
TaiI	ACGT	2 cut(s)	892, 923
TaqI	TCGA	3 cut(s)	146, 185, 679
TasI	AATT	3 cut(s)	127, 497, 729
TatI	WGTACW	1 cut(s)	519
TfiI	GAWTC	1 cut(s)	510
Tru1I	TTAA	1 cut(s)	615
Tru9I	TTAA	1 cut(s)	615
TscAI	CASTG	6 cut(s)	568, 579, 598, 693, 975, 984
TseFI	GTSAC	1 cut(s)	589
Tsp45I	GTSAC	1 cut(s)	589
TspDTI	ATGAA	1 cut(s)	770
TspRI	CASTG	6 cut(s)	568, 579, 598, 693, 975, 984
XapI	RAATTY	1 cut(s)	127
XbaI	TCTAGA	1 cut(s)	506
XceI	RCATGY	1 cut(s)	153
XmiI	GTMKAC	2 cut(s)	146, 813
XspI	CTAG	4 cut(s)	33, 443, 507, 744
ZrmI	AGTACT	1 cut(s)	521
Zsp2I	ATGCAT	1 cut(s)	862

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.