Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0007397

Physical Location & Seq

Genomic Coordinates Forward (+)

36057221 .. 36062450

Gene Structure 5230 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG302100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGATAGGAAATTCTTTGGCCCAAGTCTCAACATGCCCCACAATGTTGTCTTTGTCACGTTTTTCTTCAAATGGCTTGCCTTATCTCCCTCCAAGGTCAACAAAATTAACCCAGATAAGGGCTACGTCTGCTAATACTGGACACAGTCAACCACAGTCCTCTTCTAAGAGAGAAAGGAATATTCTTGCAGTTGTTTTGGATGCTCCTCGTACTCTTTGGAGGCAAACATTACGACCATTGAGTGATTTTGGGTTTGGTCGTAGAAGCATATGGGAAGGTGGGGTAGGGCTGTTTCTAGTCTCAGGGGCAGTTCTCCTTGCACTCACTTTGGCTTGGTTGAGGGGTTATCAATTGCGGTCTAGATTCAGGAAGTACTTAGCTGTTTTTGAGTTTACTCAAGCTTGTGGAATATCCACTGGAACGCCAGTGCGGATCAGAGGGGTCACTGTTGGAAATGTTATCCGTGTTAACTCTTCCTTGAAAAGTATCGAAGCTATTGTTGAGGTTGAAGATGATAAAACTATGATACCTCGAAATTCACTGATTGAGGTAAATCAGTCAGGTCTTCTCATGGAAACGAGAATTGACATTACACCTAGAGATCCAATTCCTAATATTTCAGTTGGGCCTCTTCATCCTGAATGTGACAAAGAAGGTGTAATTGTATGTGATAGGCAAAAGATGAAGGGATTTCAAGGGGTAAGTTTAGATGAATTGGTAGGCATATTCACCCGTCTGGGACGTGAAGTGGAGGAGATTGGTATTGCGAACACCTATTCACTTGCTGAGCGTGTTGCTTCTGTTATAGAAGAGGCAAAGCCACTGCTGAAAAAGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005319 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006869 GO:0008150 GO:0008289 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009941 GO:0010876 GO:0016020 GO:0019866 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0032365 GO:0033036 GO:0042170 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0071702

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MlaD

Protein Analysis

279

Amino Acids

30.72

Weight (kDa)

9.65

Isoelectric Point (pI)

44.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MlaD	PF02470	124 - 199	7.8e-16	MlaD protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0007397)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20320 AT3G20320 AT3G20320
fragaria_vesca	FvH4_1g23450 FvH4_1g23450 FvH4_1g23450
malus_domestica	MD04G1045800.v1.1 MD13G1257900.v1.1
prunus_persica	Prupe.1G198700_v2.0.a1 Prupe.1G198700_v2.0.a1 Prupe.1G198700_v2.0.a1 Prupe.1G198700_v2.0.a1 Prupe.1G198700_v2.0.a1
pyrus_communis	pycom04g03970 pycom13g27150
rosa_chinensis	RchiOBHm_Chr2g0118821
rosa_laevigata	RLG00000018423
rosa_multiflora	Rmu_sc0001814.1_g000012
rosa_roxburghii	Rroxscaffold_2G00124680
rosa_rugosa	Rorug02G0219100
rosa_samantha	Rh2AG276100 Rh2BG287900 Rh2DG283000 Rh2DG302100
rosa_wichuraiana	Rw2G021970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	355, 430
AclWI	GGATC	2 cut(s)	440, 596
AcsI	RAATTY	2 cut(s)	10, 535
AfaI	GTAC	2 cut(s)	211, 374
AfiI	CCNNNNNNNGG	2 cut(s)	117, 118
AgsI	TTSAA	4 cut(s)	69, 481, 509, 695
AjiI	CACGTC	1 cut(s)	743
AluBI	AGCT	3 cut(s)	380, 401, 494
AluI	AGCT	3 cut(s)	380, 401, 494
Alw26I	GTCTC	2 cut(s)	31, 304
AlwI	GGATC	2 cut(s)	440, 596
AoxI	GGCC	2 cut(s)	18, 626
ApoI	RAATTY	2 cut(s)	10, 535
AspS9I	GGNCC	2 cut(s)	19, 626
AsuHPI	GGTGA	1 cut(s)	721
BbsI	GAAGAC	1 cut(s)	557
BcoDI	GTCTC	2 cut(s)	31, 304
BfaI	CTAG	3 cut(s)	296, 360, 597
BlpI	GCTNAGC	1 cut(s)	786
BmcAI	AGTACT	1 cut(s)	374
BmgBI	CACGTC	1 cut(s)	743
BmgT120I	GGNCC	2 cut(s)	19, 626
BmsI	GCATC	1 cut(s)	190
BpiI	GAAGAC	1 cut(s)	557
Bpu1102I	GCTNAGC	1 cut(s)	786
BpuEI	CTTGAG	1 cut(s)	381
BsaJI	CCNNGG	1 cut(s)	92
Bsc4I	CCNNNNNNNGG	2 cut(s)	117, 118
Bse1I	ACTGG	3 cut(s)	142, 421, 425
BseDI	CCNNGG	1 cut(s)	92
BseGI	GGATG	2 cut(s)	205, 634
BseLI	CCNNNNNNNGG	2 cut(s)	117, 118
BseMII	CTCAG	2 cut(s)	315, 777
BseNI	ACTGG	3 cut(s)	142, 421, 425
BseRI	GAGGAG	2 cut(s)	195, 767
BshFI	GGCC	2 cut(s)	20, 628
BslFI	GGGAC	1 cut(s)	753
BslI	CCNNNNNNNGG	2 cut(s)	117, 118
BsmAI	GTCTC	2 cut(s)	31, 304
BsmFI	GGGAC	1 cut(s)	753
BsnI	GGCC	2 cut(s)	20, 628
Bsp143I	GATC	2 cut(s)	432, 601
Bsp1720I	GCTNAGC	1 cut(s)	786
BspACI	CCGC	2 cut(s)	355, 430
BspANI	GGCC	2 cut(s)	20, 628
BspCNI	CTCAG	2 cut(s)	314, 778
BspPI	GGATC	2 cut(s)	440, 596
BsrI	ACTGG	3 cut(s)	142, 421, 425
BssECI	CCNNGG	1 cut(s)	92
BssMI	GATC	2 cut(s)	432, 601
BssT1I	CCWWGG	1 cut(s)	92
Bst4CI	ACNGT	3 cut(s)	146, 156, 448
Bst6I	CTCTTC	4 cut(s)	166, 478, 636, 804
BstC8I	GCNNGC	1 cut(s)	77
BstDEI	CTNAG	4 cut(s)	165, 301, 376, 786
BstF5I	GGATG	2 cut(s)	205, 634
BstKTI	GATC	2 cut(s)	435, 604
BstMAI	GTCTC	2 cut(s)	31, 304
BstMBI	GATC	2 cut(s)	432, 601
BstMWI	GCNNNNNNNGC	1 cut(s)	128
BstNSI	RCATGY	1 cut(s)	36
BstV2I	GAAGAC	1 cut(s)	557
BstX2I	RGATCY	1 cut(s)	601
BstYI	RGATCY	1 cut(s)	601
BsuRI	GGCC	2 cut(s)	20, 628
BtrI	CACGTC	1 cut(s)	743
BtsCI	GGATG	2 cut(s)	205, 634
BtsI	GCAGTG	1 cut(s)	821
BtsIMutI	CAGTG	5 cut(s)	414, 432, 444, 539, 821
Cac8I	GCNNGC	1 cut(s)	77
Cfr13I	GGNCC	2 cut(s)	19, 626
Csp6I	GTAC	2 cut(s)	210, 373
CviAII	CATG	2 cut(s)	33, 571
CviQI	GTAC	2 cut(s)	210, 373
DdeI	CTNAG	4 cut(s)	165, 301, 376, 786
DpnI	GATC	2 cut(s)	434, 603
DpnII	GATC	2 cut(s)	432, 601
Eam1104I	CTCTTC	4 cut(s)	166, 478, 636, 804
EarI	CTCTTC	4 cut(s)	166, 478, 636, 804
Eco130I	CCWWGG	1 cut(s)	92
EcoT14I	CCWWGG	1 cut(s)	92
ErhI	CCWWGG	1 cut(s)	92
FaeI	CATG	2 cut(s)	36, 574
FaiI	YATR	8 cut(s)	34, 269, 271, 524, 572, 667, 725, 806
FaqI	GGGAC	1 cut(s)	753
FatI	CATG	2 cut(s)	32, 570
FauNDI	CATATG	1 cut(s)	269
FokI	GGATG	2 cut(s)	212, 621
FspBI	CTAG	3 cut(s)	296, 360, 597
HaeIII	GGCC	2 cut(s)	20, 628
Hin1II	CATG	2 cut(s)	36, 574
HincII	GTYRAC	3 cut(s)	99, 149, 469
HindII	GTYRAC	3 cut(s)	99, 149, 469
HindIII	AAGCTT	1 cut(s)	399
HinfI	GANTC	1 cut(s)	363
HpaI	GTTAAC	1 cut(s)	469
HphI	GGTGA	1 cut(s)	721
Hpy166II	GTNNAC	4 cut(s)	99, 149, 393, 469
Hpy188I	TCNGA	1 cut(s)	437
Hpy188III	TCNNGA	3 cut(s)	360, 367, 638
Hpy8I	GTNNAC	4 cut(s)	99, 149, 393, 469
HpyAV	CCTTC	3 cut(s)	269, 647, 679
HpyCH4III	ACNGT	3 cut(s)	146, 156, 448
HpyCH4IV	ACGT	3 cut(s)	58, 125, 742
HpyCH4V	TGCA	2 cut(s)	188, 320
HpyF10VI	GCNNNNNNNGC	1 cut(s)	128
HpyF3I	CTNAG	4 cut(s)	165, 301, 376, 786
HpySE526I	ACGT	3 cut(s)	58, 125, 742
Hsp92II	CATG	2 cut(s)	36, 574
KspAI	GTTAAC	1 cut(s)	469
Kzo9I	GATC	2 cut(s)	432, 601
LmnI	GCTCC	1 cut(s)	208
LpnPI	CCDG	9 cut(s)	123, 125, 288, 352, 402, 438, 546, 651, 722
LweI	GCATC	1 cut(s)	190
MaeI	CTAG	3 cut(s)	296, 360, 597
MaeII	ACGT	3 cut(s)	58, 125, 742
MaeIII	GTNAC	3 cut(s)	54, 442, 644
MalI	GATC	2 cut(s)	434, 603
MboI	GATC	2 cut(s)	432, 601
MboII	GAAGA	7 cut(s)	57, 153, 465, 521, 557, 623, 821
MfeI	CAATTG	1 cut(s)	350
MflI	RGATCY	1 cut(s)	601
MluCI	AATT	8 cut(s)	10, 104, 350, 535, 582, 606, 660, 713
MmeI	TCCRAC	1 cut(s)	430
MseI	TTAA	2 cut(s)	107, 468
MunI	CAATTG	1 cut(s)	350
MwoI	GCNNNNNNNGC	1 cut(s)	128
NdeI	CATATG	1 cut(s)	269
NdeII	GATC	2 cut(s)	432, 601
NlaIII	CATG	2 cut(s)	36, 574
NmuCI	GTSAC	3 cut(s)	54, 442, 644
NspI	RCATGY	1 cut(s)	36
PfeI	GAWTC	1 cut(s)	363
PflFI	GACNNNGTC	1 cut(s)	144
PspPI	GGNCC	2 cut(s)	19, 626
PsuI	RGATCY	1 cut(s)	601
PsyI	GACNNNGTC	1 cut(s)	144
RsaI	GTAC	2 cut(s)	211, 374
RsaNI	GTAC	2 cut(s)	210, 373
SaqAI	TTAA	2 cut(s)	107, 468
Sau3AI	GATC	2 cut(s)	432, 601
Sau96I	GGNCC	2 cut(s)	19, 626
ScaI	AGTACT	1 cut(s)	374
SfaNI	GCATC	1 cut(s)	190
SmlI	CTYRAG	1 cut(s)	396
SmoI	CTYRAG	1 cut(s)	396
Sse9I	AATT	8 cut(s)	10, 104, 350, 535, 582, 606, 660, 713
SsiI	CCGC	2 cut(s)	355, 430
SspI	AATATT	2 cut(s)	181, 616
SspMI	CTAG	3 cut(s)	296, 360, 597
StyI	CCWWGG	1 cut(s)	92
TaaI	ACNGT	3 cut(s)	146, 156, 448
TaiI	ACGT	3 cut(s)	61, 128, 745
TaqI	TCGA	2 cut(s)	489, 532
TasI	AATT	8 cut(s)	10, 104, 350, 535, 582, 606, 660, 713
TatI	WGTACW	1 cut(s)	372
TfiI	GAWTC	1 cut(s)	363
Tru1I	TTAA	2 cut(s)	107, 468
Tru9I	TTAA	2 cut(s)	107, 468
TscAI	CASTG	5 cut(s)	421, 432, 451, 546, 828
TseFI	GTSAC	3 cut(s)	54, 442, 644
Tsp45I	GTSAC	3 cut(s)	54, 442, 644
TspDTI	ATGAA	3 cut(s)	623, 698, 726
TspGWI	ACGGA	1 cut(s)	452
TspRI	CASTG	5 cut(s)	421, 432, 451, 546, 828
Tth111I	GACNNNGTC	1 cut(s)	144
XapI	RAATTY	2 cut(s)	10, 535
XbaI	TCTAGA	1 cut(s)	359
XceI	RCATGY	1 cut(s)	36
XspI	CTAG	3 cut(s)	296, 360, 597
ZrmI	AGTACT	1 cut(s)	374

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.