Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0007397

Physical Location & Seq

Genomic Coordinates Forward (+)

29600152 .. 29603597

Gene Structure 3446 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018423

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGTTGTCTTTGTCACGTTTTTCTTCAAATGGCTTGCCTTATCTCCCTCCAAGGTCAACAAAATTAACCCAGATAAGGGCTACATCTGCTAATACTGGACACAGTCAACCACAGTCCTCTTCTAAGAGAGAAAGGAATATTCTTGCAGTTGTTTTGGATGCTCCTCGTACTATTTGGAGGCAAACATTACGACCATTGAGTGATTTTGGGTTTGGTGGTAGAAGCATATGGGAAGGTGGGGTAGGGCTGTTTCTAGTCTCAGGGGCAGTTCTCCTTGCACTCGCTTTGGCTTGGTTGAGGGGTTATCAATTGCGGTCTAGATTCAGGAAGTACTTAGCTGTTTTTGAGTTTACTCAAGCTTGTGGAATATCCACTGGAACGCCAGTGCGGATCAGAGGGGTCACTGTTGGAAATGTTATCCGTGTTAACTCTTCCTTGAAAAGTATCGAAGCTGTTGTTGAGGTTGAAGATGATAAAACTATGATACCTCGAAATTCACTGATTGAGGTAAATCAGTCAGGTCTTCTCATGGAAACGAGAATTGACATTACACCTAGAGATCCAATTCCTAATATTTCAGTTGGGCCTCTTCATCCTGAATGTGACAAAGAAGGTGTAATTGTATGTGATAGGCAAAAGATGAAGGGATTTCAAGGGGTAAGTTTAGATGAATTGGTAGGCATATTCACCCGTCTGGGACGTGAAGTGGAGGAGATTGGTATTGCGAACACCTATTCACTTGCTGAGCGCGTTGCTTCTGTTATAGAAGAGGCAAAGCCACTGCTGAAAAAGATCCAAGCCATGGCTGAAGATGTTCAACCTTTGTTGGCTGAGGTTCATGATAGTGGTCTGCTAAAGGAAGTTGAGACTTTGACCAAAAGCCTTGCACAAGCCTCAGAAGATTTGAGGAGAGTGCACTCATCTATTATGACTCCTGAGAATACAGAACTGATTCAGAAGTCCATATACACTTTGATTTTCACCATGAAGAACATTGAGAATATAAGCTCTGATATTTTGGGATTCACGGGTGATGAGGCTACAAGAAAAAATTTGAAGTTACTCATCAAGTCTCTGAGCAGGCTATTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005319 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006869 GO:0008150 GO:0008289 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009941 GO:0010876 GO:0016020 GO:0019866 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0032365 GO:0033036 GO:0042170 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0071702

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MlaD

Protein Analysis

364

Amino Acids

40.12

Weight (kDa)

9.06

Isoelectric Point (pI)

44.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MlaD	PF02470	110 - 185	8.4e-16	MlaD protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007397)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20320 AT3G20320 AT3G20320
fragaria_vesca	FvH4_1g23450 FvH4_1g23450 FvH4_1g23450
malus_domestica	MD04G1045800.v1.1 MD13G1257900.v1.1
prunus_persica	Prupe.1G198700_v2.0.a1 Prupe.1G198700_v2.0.a1 Prupe.1G198700_v2.0.a1 Prupe.1G198700_v2.0.a1 Prupe.1G198700_v2.0.a1
pyrus_communis	pycom04g03970 pycom13g27150
rosa_chinensis	RchiOBHm_Chr2g0118821
rosa_laevigata	RLG00000018423
rosa_multiflora	Rmu_sc0001814.1_g000012
rosa_roxburghii	Rroxscaffold_2G00124680
rosa_rugosa	Rorug02G0219100
rosa_samantha	Rh2AG276100 Rh2BG287900 Rh2DG283000 Rh2DG302100
rosa_wichuraiana	Rw2G021970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	802
AccII	CGCG	1 cut(s)	750
AciI	CCGC	2 cut(s)	313, 388
AclWI	GGATC	3 cut(s)	398, 554, 787
AcsI	RAATTY	2 cut(s)	493, 1051
AcuI	CTGAAG	1 cut(s)	828
AfaI	GTAC	2 cut(s)	169, 332
AfiI	CCNNNNNNNGG	3 cut(s)	75, 76, 802
AgsI	TTSAA	6 cut(s)	27, 439, 467, 653, 818, 1057
AjiI	CACGTC	1 cut(s)	701
AluBI	AGCT	4 cut(s)	338, 359, 452, 1008
AluI	AGCT	4 cut(s)	338, 359, 452, 1008
Alw21I	GWGCWC	1 cut(s)	918
Alw26I	GTCTC	3 cut(s)	262, 860, 1077
Alw44I	GTGCAC	1 cut(s)	914
AlwI	GGATC	3 cut(s)	398, 554, 787
AoxI	GGCC	1 cut(s)	584
ApaLI	GTGCAC	1 cut(s)	914
ApoI	RAATTY	2 cut(s)	493, 1051
Asp700I	GAANNNNTTC	2 cut(s)	813, 951
AspLEI	GCGC	1 cut(s)	750
AspS9I	GGNCC	1 cut(s)	584
AsuHPI	GGTGA	3 cut(s)	679, 973, 1043
BaeGI	GKGCMC	1 cut(s)	918
BarI	GAAGNNNNNNTAC	2 cut(s)	950, 982
BbsI	GAAGAC	1 cut(s)	515
Bbv12I	GWGCWC	1 cut(s)	918
BbvCI	CCTCAGC	1 cut(s)	831
BcoDI	GTCTC	3 cut(s)	262, 860, 1077
BfaI	CTAG	3 cut(s)	254, 318, 555
BlpI	GCTNAGC	1 cut(s)	744
BmcAI	AGTACT	1 cut(s)	332
BmgBI	CACGTC	1 cut(s)	701
BmgT120I	GGNCC	1 cut(s)	584
BmsI	GCATC	1 cut(s)	148
BpiI	GAAGAC	1 cut(s)	515
Bpu10I	CCTNAGC	1 cut(s)	831
Bpu1102I	GCTNAGC	1 cut(s)	744
BpuEI	CTTGAG	1 cut(s)	339
BsaJI	CCNNGG	2 cut(s)	50, 801
Bsc4I	CCNNNNNNNGG	3 cut(s)	75, 76, 802
Bse1I	ACTGG	3 cut(s)	100, 379, 383
BseDI	CCNNGG	2 cut(s)	50, 801
BseGI	GGATG	2 cut(s)	163, 592
BseLI	CCNNNNNNNGG	3 cut(s)	75, 76, 802
BseMII	CTCAG	6 cut(s)	273, 735, 822, 909, 927, 1067
BseNI	ACTGG	3 cut(s)	100, 379, 383
BseRI	GAGGAG	3 cut(s)	153, 725, 922
BseSI	GKGCMC	1 cut(s)	918
Bsh1236I	CGCG	1 cut(s)	750
BshFI	GGCC	1 cut(s)	586
BsiHKAI	GWGCWC	1 cut(s)	918
BslFI	GGGAC	1 cut(s)	711
BslI	CCNNNNNNNGG	3 cut(s)	75, 76, 802
BsmAI	GTCTC	3 cut(s)	262, 860, 1077
BsmFI	GGGAC	1 cut(s)	711
BsnI	GGCC	1 cut(s)	586
Bsp1286I	GDGCHC	1 cut(s)	918
Bsp143I	GATC	3 cut(s)	390, 559, 792
Bsp1720I	GCTNAGC	1 cut(s)	744
Bsp19I	CCATGG	1 cut(s)	801
BspACI	CCGC	2 cut(s)	313, 388
BspANI	GGCC	1 cut(s)	586
BspCNI	CTCAG	6 cut(s)	272, 736, 823, 908, 928, 1068
BspFNI	CGCG	1 cut(s)	750
BspHI	TCATGA	1 cut(s)	838
BspPI	GGATC	3 cut(s)	398, 554, 787
BsrI	ACTGG	3 cut(s)	100, 379, 383
BssECI	CCNNGG	2 cut(s)	50, 801
BssMI	GATC	3 cut(s)	390, 559, 792
BssT1I	CCWWGG	2 cut(s)	50, 801
Bst4CI	ACNGT	3 cut(s)	104, 114, 406
Bst6I	CTCTTC	4 cut(s)	124, 436, 594, 762
BstC8I	GCNNGC	2 cut(s)	35, 1082
BstDEI	CTNAG	8 cut(s)	123, 259, 334, 744, 831, 895, 936, 1076
BstDSI	CCRYGG	1 cut(s)	801
BstF5I	GGATG	2 cut(s)	163, 592
BstFNI	CGCG	1 cut(s)	750
BstHHI	GCGC	1 cut(s)	750
BstKTI	GATC	3 cut(s)	393, 562, 795
BstMAI	GTCTC	3 cut(s)	262, 860, 1077
BstMBI	GATC	3 cut(s)	390, 559, 792
BstMWI	GCNNNNNNNGC	1 cut(s)	86
BstSLI	GKGCMC	1 cut(s)	918
BstUI	CGCG	1 cut(s)	750
BstV2I	GAAGAC	1 cut(s)	515
BstX2I	RGATCY	2 cut(s)	559, 792
BstYI	RGATCY	2 cut(s)	559, 792
BsuRI	GGCC	1 cut(s)	586
BtgI	CCRYGG	1 cut(s)	801
BtrI	CACGTC	1 cut(s)	701
BtsCI	GGATG	2 cut(s)	163, 592
BtsI	GCAGTG	1 cut(s)	779
BtsIMutI	CAGTG	5 cut(s)	372, 390, 402, 497, 779
Cac8I	GCNNGC	2 cut(s)	35, 1082
CciI	TCATGA	1 cut(s)	838
CfoI	GCGC	1 cut(s)	750
Cfr13I	GGNCC	1 cut(s)	584
Csp6I	GTAC	2 cut(s)	168, 331
CviAII	CATG	4 cut(s)	529, 802, 839, 985
CviQI	GTAC	2 cut(s)	168, 331
DdeI	CTNAG	8 cut(s)	123, 259, 334, 744, 831, 895, 936, 1076
DpnI	GATC	3 cut(s)	392, 561, 794
DpnII	GATC	3 cut(s)	390, 559, 792
Eam1104I	CTCTTC	4 cut(s)	124, 436, 594, 762
EarI	CTCTTC	4 cut(s)	124, 436, 594, 762
Eco130I	CCWWGG	2 cut(s)	50, 801
Eco57I	CTGAAG	1 cut(s)	828
EcoT14I	CCWWGG	2 cut(s)	50, 801
ErhI	CCWWGG	2 cut(s)	50, 801
FaeI	CATG	4 cut(s)	532, 805, 842, 988
FaqI	GGGAC	1 cut(s)	711
FatI	CATG	4 cut(s)	528, 801, 838, 984
FauNDI	CATATG	1 cut(s)	227
FokI	GGATG	2 cut(s)	170, 579
FspBI	CTAG	3 cut(s)	254, 318, 555
GlaI	GCGC	1 cut(s)	749
HaeIII	GGCC	1 cut(s)	586
HhaI	GCGC	1 cut(s)	750
Hin1II	CATG	4 cut(s)	532, 805, 842, 988
Hin6I	GCGC	1 cut(s)	748
HinP1I	GCGC	1 cut(s)	748
HincII	GTYRAC	3 cut(s)	57, 107, 427
HindII	GTYRAC	3 cut(s)	57, 107, 427
HindIII	AAGCTT	1 cut(s)	357
HinfI	GANTC	4 cut(s)	321, 931, 952, 1023
HpaI	GTTAAC	1 cut(s)	427
HphI	GGTGA	3 cut(s)	679, 973, 1043
Hpy166II	GTNNAC	5 cut(s)	57, 107, 351, 427, 916
Hpy188I	TCNGA	5 cut(s)	395, 898, 957, 1012, 1077
Hpy188III	TCNNGA	5 cut(s)	318, 325, 596, 839, 935
Hpy8I	GTNNAC	5 cut(s)	57, 107, 351, 427, 916
HpyAV	CCTTC	3 cut(s)	227, 605, 637
HpyCH4III	ACNGT	3 cut(s)	104, 114, 406
HpyCH4IV	ACGT	2 cut(s)	16, 700
HpyCH4V	TGCA	4 cut(s)	146, 278, 887, 916
HpyF10VI	GCNNNNNNNGC	1 cut(s)	86
HpyF3I	CTNAG	8 cut(s)	123, 259, 334, 744, 831, 895, 936, 1076
HpySE526I	ACGT	2 cut(s)	16, 700
Hsp92II	CATG	4 cut(s)	532, 805, 842, 988
HspAI	GCGC	1 cut(s)	748
KspAI	GTTAAC	1 cut(s)	427
Kzo9I	GATC	3 cut(s)	390, 559, 792
LmnI	GCTCC	1 cut(s)	166
LweI	GCATC	1 cut(s)	148
MaeI	CTAG	3 cut(s)	254, 318, 555
MaeII	ACGT	2 cut(s)	16, 700
MaeIII	GTNAC	4 cut(s)	12, 400, 602, 1059
MalI	GATC	3 cut(s)	392, 561, 794
MboI	GATC	3 cut(s)	390, 559, 792
MfeI	CAATTG	1 cut(s)	308
MflI	RGATCY	2 cut(s)	559, 792
MhlI	GDGCHC	1 cut(s)	918
MluCI	AATT	8 cut(s)	62, 308, 493, 540, 564, 618, 671, 1051
MlyI	GAGTC	1 cut(s)	925
MmeI	TCCRAC	1 cut(s)	388
MroXI	GAANNNNTTC	2 cut(s)	813, 951
MseI	TTAA	2 cut(s)	65, 426
MslI	CAYNNNNRTG	1 cut(s)	843
MunI	CAATTG	1 cut(s)	308
MvnI	CGCG	1 cut(s)	750
MwoI	GCNNNNNNNGC	1 cut(s)	86
NcoI	CCATGG	1 cut(s)	801
NdeI	CATATG	1 cut(s)	227
NdeII	GATC	3 cut(s)	390, 559, 792
NlaIII	CATG	4 cut(s)	532, 805, 842, 988
NmuCI	GTSAC	3 cut(s)	12, 400, 602
PagI	TCATGA	1 cut(s)	838
PdmI	GAANNNNTTC	2 cut(s)	813, 951
PfeI	GAWTC	3 cut(s)	321, 952, 1023
PflFI	GACNNNGTC	1 cut(s)	102
PflMI	CCANNNNNTGG	1 cut(s)	802
PleI	GAGTC	1 cut(s)	925
PpsI	GAGTC	1 cut(s)	925
PspPI	GGNCC	1 cut(s)	584
PsuI	RGATCY	2 cut(s)	559, 792
PsyI	GACNNNGTC	1 cut(s)	102
RsaI	GTAC	2 cut(s)	169, 332
RsaNI	GTAC	2 cut(s)	168, 331
RseI	CAYNNNNRTG	1 cut(s)	843
SaqAI	TTAA	2 cut(s)	65, 426
Sau3AI	GATC	3 cut(s)	390, 559, 792
Sau96I	GGNCC	1 cut(s)	584
ScaI	AGTACT	1 cut(s)	332
SchI	GAGTC	1 cut(s)	925
SduI	GDGCHC	1 cut(s)	918
SfaNI	GCATC	1 cut(s)	148
SmiMI	CAYNNNNRTG	1 cut(s)	843
SmlI	CTYRAG	1 cut(s)	354
SmoI	CTYRAG	1 cut(s)	354
Sse9I	AATT	8 cut(s)	62, 308, 493, 540, 564, 618, 671, 1051
SsiI	CCGC	2 cut(s)	313, 388
SspI	AATATT	2 cut(s)	139, 574
SspMI	CTAG	3 cut(s)	254, 318, 555
StyI	CCWWGG	2 cut(s)	50, 801
TaaI	ACNGT	3 cut(s)	104, 114, 406
TaiI	ACGT	2 cut(s)	19, 703
TaqI	TCGA	2 cut(s)	447, 490
TasI	AATT	8 cut(s)	62, 308, 493, 540, 564, 618, 671, 1051
TatI	WGTACW	1 cut(s)	330
TfiI	GAWTC	3 cut(s)	321, 952, 1023
Tru1I	TTAA	2 cut(s)	65, 426
Tru9I	TTAA	2 cut(s)	65, 426
TscAI	CASTG	5 cut(s)	379, 390, 409, 504, 786
TseFI	GTSAC	3 cut(s)	12, 400, 602
Tsp45I	GTSAC	3 cut(s)	12, 400, 602
TspDTI	ATGAA	5 cut(s)	581, 656, 684, 827, 1001
TspGWI	ACGGA	1 cut(s)	410
TspRI	CASTG	5 cut(s)	379, 390, 409, 504, 786
Tth111I	GACNNNGTC	1 cut(s)	102
Van91I	CCANNNNNTGG	1 cut(s)	802
VneI	GTGCAC	1 cut(s)	914
XapI	RAATTY	2 cut(s)	493, 1051
XbaI	TCTAGA	1 cut(s)	317
XmnI	GAANNNNTTC	2 cut(s)	813, 951
XspI	CTAG	3 cut(s)	254, 318, 555
ZrmI	AGTACT	1 cut(s)	332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.