Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0007397

Physical Location & Seq

Genomic Coordinates Forward (+)

23532650 .. 23535554

Gene Structure 2905 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g27150.17

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2145 bp

ATGGTGTGTAGTTATGCTTTTTTATCTTGTTCTTTCATTTGCTCGACGTTTCAGGGTTTGACGGTGTCAATTGCAATGCGATTTCTGAAAGTATTAAAAATATCCTTATTTGTGTTAGATTTTTTGTTTTTCAGTTATATCTCAAGATTAGACACCATGAGAAGAAAATTAAGCAGAAAGGTTTTCCGTTTTCCCTTCTCTTCTTTTGATTTCCCCAGTATACATCGTTTTTTTTTTCTTTGTTTAATTCTTTTAGTTTTACATTTGTGGATTCTTTCGGATTTTACAATTATTCGAAATTGGATTTTTGTTAAATTTTCAGATACATTTGACCCTGAATTCCCTTGTGTGCTTGACCTCGCCACTGAGCTTGAAAGATTTTTTTTGGCCCTAGCTAACTTCAAAATCGATACTTTTTGTTTGGCTAGTGTGAAACTTTGGACAAGAAAAGAAAAACCGTGTCTTGCGTTTTATACAATTTCCTTTTTTTCATGTGATGTTGACGCTTTTTATCTTTTGATGAGTCAATGTCCAGCCACTCCATTTGCTCACCATAGAAATTACACGTTAAGAATTATGCATGAATGTATGAATAAACTTCGGATGCGAGGGAATATGAGCATTCAACACATATACATAAATATACTCTTTGAAGAGATGCTTTCAGGTTCCACTAAGTGCCACAAGCATGAATTCCAATGGCAAGTGCTTTTCTTTTTTTCTATATGTGTTGGCAATTGGGTTGACAAGCGTATTATTTTTTTAATTCTTGAACGGAATCTAGAAGCTAATTTCTCTTTTTCACGGAGTGCGACTAGTTTTGTGCAAGGGTCGAGGCATTCTTCATTTTCCACTAAAGAAGAAACTATCAGTGTTCTCTATTTTTTAATACCTTCTTTGATTCATAGTGAATTTGTTATTCCAAATTATCAATCAAATACAACTTACTATAATTCTTATTTGAATTGTACTTTGGAGAGAGTTCCCAGTAGATACAAGAGCAAAAGAGAAAGTAGGAGTTTCCCTGATCTTCATGGCCACTTTCAAAGTTCAAAATATTGTTCTATTGCAACACTTAAAAACTTCTCATACATTCAAACTCAAGTATTAAGAATTTGTAAATCGCGTACAACGCTGGTGATTAAAGAAATGTATGTATATGGATGCATTCAATTTCTATTTTTAATAGTTTGTACTTCATTCCTTACTAATTTGACCCTAATCCCTTGGAACTTTGACGTTATGGTCAAAAATATTGATAGACATTTTTTGACTTTTGGACATTTATCCCTCTTCATTGGAGATGGCCTTAGGTTTTATAGGGTTGTGGGGACTCCATTAAGAGTCAACATTGGAGATGCTCGCTTTACAATAATTTCACTAGACAGCATGATTGATAAATTGAAACTTTTTGATGAACAACATATAGGTGAGTCTTTACCAAATTTGATTTCCCCCAAACTATTTTTATTCACCCAATGCCGATTCCGATTACGGATTATACATGTGTTTACTAAAATTGGGAGGAATCAAAAGTGCGTGAGGCCCACACAAAAAATGGAATCCAATTCCAAGATTTGGCTAATTTGGATTCCCAACATAGAGAAGGTATTTGGATTCCAGATTGCCCAAGCAATCAGAATGATAATTTATTATCCTTTTAACCCTAGACTGTATTTTTCATTTCACGCTACTCATTTCTCTCTTCTCTTAGCCGCAGCTCTTGTCACAATTACGGATAGTTTTTGCTTTGAACTACACGGGGAAAAAATAAATGAAAGATTTTCCATTAATTGTGTTTCCTCGCATCCTGCTAAATCTTTCATTGCTTCATTCACTTCACTTCACTTGTTAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATAGAGAGAGAGAGTTCAATAAAAGTTGGAAACTTTGTTATTGGTTTTTGGATTTGTGAATTGGGTCTGATTTGTTTTGATGTTTTTTTTTTTGTATCTTTGGATCATGTAAGCCAGCAACCCTCCTCTTCTTCTGAGAAAAATAATCCACTTGCAGTTGTTTTGGATGTCCCTCGGACTATTTGGAGGCAAACATTACGACCGTTGAGTGACTTTGGCTTTGGTAGTAAAAGTATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005319 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006869 GO:0008150 GO:0008289 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009941 GO:0010876 GO:0016020 GO:0019866 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0032365 GO:0033036 GO:0042170 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0071702

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MlaD

Protein Analysis

715

Amino Acids

83.91

Weight (kDa)

9.22

Isoelectric Point (pI)

39.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007397)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20320 AT3G20320 AT3G20320
fragaria_vesca	FvH4_1g23450 FvH4_1g23450 FvH4_1g23450
malus_domestica	MD04G1045800.v1.1 MD13G1257900.v1.1
prunus_persica	Prupe.1G198700_v2.0.a1 Prupe.1G198700_v2.0.a1 Prupe.1G198700_v2.0.a1 Prupe.1G198700_v2.0.a1 Prupe.1G198700_v2.0.a1
pyrus_communis	pycom04g03970 pycom13g27150
rosa_chinensis	RchiOBHm_Chr2g0118821
rosa_laevigata	RLG00000018423
rosa_multiflora	Rmu_sc0001814.1_g000012
rosa_roxburghii	Rroxscaffold_2G00124680
rosa_rugosa	Rorug02G0219100
rosa_samantha	Rh2AG276100 Rh2BG287900 Rh2DG283000 Rh2DG302100
rosa_wichuraiana	Rw2G021970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1244
AccB7I	CCANNNNNTGG	1 cut(s)	1578
AccI	GTMKAC	1 cut(s)	220
AccII	CGCG	1 cut(s)	1126
AciI	CCGC	1 cut(s)	1716
AclWI	GGATC	1 cut(s)	2016
AcoI	YGGCCR	1 cut(s)	1036
AcsI	RAATTY	6 cut(s)	314, 338, 692, 911, 1113, 1444
AdeI	CACNNNGTG	2 cut(s)	678, 809
AfaI	GTAC	3 cut(s)	970, 1129, 1195
AfiI	CCNNNNNNNGG	1 cut(s)	1578
AflIII	ACRYGT	2 cut(s)	564, 1504
AhlI	ACTAGT	1 cut(s)	815
AjuI	GAANNNNNNNTTGG	4 cut(s)	956, 988, 1435, 1467
AluBI	AGCT	4 cut(s)	370, 395, 788, 1721
AluI	AGCT	4 cut(s)	370, 395, 788, 1721
AlwI	GGATC	1 cut(s)	2016
AoxI	GGCC	4 cut(s)	387, 1036, 1306, 1544
ApeKI	GCWGC	1 cut(s)	1718
ApoI	RAATTY	6 cut(s)	314, 338, 692, 911, 1113, 1444
ArsI	GACNNNNNNTTYG	2 cut(s)	2108, 2140
AseI	ATTAAT	1 cut(s)	1791
AspS9I	GGNCC	2 cut(s)	388, 1545
AsuHPI	GGTGA	4 cut(s)	542, 1150, 1442, 1465
AsuII	TTCGAA	1 cut(s)	295
AxyI	CCTNAGG	1 cut(s)	1310
BalI	TGGCCA	1 cut(s)	1038
BbvI	GCAGC	1 cut(s)	1730
BccI	CCATC	1 cut(s)	1298
BcuI	ACTAGT	1 cut(s)	815
BfaI	CTAG	6 cut(s)	392, 426, 782, 816, 1382, 1668
BisI	GCNGC	2 cut(s)	1716, 1719
BlsI	GCNGC	2 cut(s)	1717, 1720
BmgT120I	GGNCC	2 cut(s)	388, 1545
BmiI	GGNNCC	1 cut(s)	670
BmrI	ACTGGG	2 cut(s)	210, 981
BmsI	GCATC	5 cut(s)	594, 648, 1154, 1348, 1816
BmuI	ACTGGG	2 cut(s)	210, 981
Bpu14I	TTCGAA	1 cut(s)	295
BpuEI	CTTGAG	2 cut(s)	127, 1086
Bsa29I	ATCGAT	1 cut(s)	408
BsaJI	CCNNGG	2 cut(s)	1226, 2078
Bsc4I	CCNNNNNNNGG	1 cut(s)	1578
Bse1I	ACTGG	2 cut(s)	216, 987
Bse21I	CCTNAGG	1 cut(s)	1310
Bse3DI	GCAATG	2 cut(s)	81, 1824
BseCI	ATCGAT	1 cut(s)	408
BseDI	CCNNGG	2 cut(s)	1226, 2078
BseGI	GGATG	4 cut(s)	609, 1169, 1807, 2077
BseLI	CCNNNNNNNGG	1 cut(s)	1578
BseMI	GCAATG	2 cut(s)	81, 1824
BseMII	CTCAG	2 cut(s)	357, 2031
BseNI	ACTGG	2 cut(s)	216, 987
BseRI	GAGGAG	1 cut(s)	2020
BseXI	GCAGC	1 cut(s)	1730
Bsh1236I	CGCG	1 cut(s)	1126
Bsh1285I	CGRYCG	1 cut(s)	2108
BshFI	GGCC	4 cut(s)	389, 1038, 1308, 1546
BshVI	ATCGAT	1 cut(s)	408
BsiEI	CGRYCG	1 cut(s)	2108
BslFI	GGGAC	2 cut(s)	1345, 2060
BslI	CCNNNNNNNGG	1 cut(s)	1578
BsmFI	GGGAC	2 cut(s)	1345, 2060
BsmI	GAATGC	3 cut(s)	621, 838, 1167
BsnI	GGCC	4 cut(s)	389, 1038, 1308, 1546
Bsp119I	TTCGAA	1 cut(s)	295
Bsp143I	GATC	2 cut(s)	1027, 2008
BspACI	CCGC	1 cut(s)	1716
BspANI	GGCC	4 cut(s)	389, 1038, 1308, 1546
BspCNI	CTCAG	2 cut(s)	358, 2032
BspDI	ATCGAT	1 cut(s)	408
BspFNI	CGCG	1 cut(s)	1126
BspLI	GGNNCC	1 cut(s)	670
BspPI	GGATC	1 cut(s)	2016
BspT104I	TTCGAA	1 cut(s)	295
BsrDI	GCAATG	2 cut(s)	81, 1824
BsrI	ACTGG	2 cut(s)	216, 987
BssECI	CCNNGG	2 cut(s)	1226, 2078
BssMI	GATC	2 cut(s)	1027, 2008
BssNAI	GTATAC	1 cut(s)	221
BssT1I	CCWWGG	1 cut(s)	1226
Bst1107I	GTATAC	1 cut(s)	221
Bst4CI	ACNGT	4 cut(s)	64, 459, 1674, 2109
Bst6I	CTCTTC	5 cut(s)	205, 648, 1298, 1710, 2038
BstBI	TTCGAA	1 cut(s)	295
BstC8I	GCNNGC	2 cut(s)	1363, 2021
BstDEI	CTNAG	5 cut(s)	366, 675, 1310, 1711, 2040
BstF5I	GGATG	4 cut(s)	609, 1169, 1807, 2077
BstFNI	CGCG	1 cut(s)	1126
BstKTI	GATC	2 cut(s)	1030, 2011
BstMBI	GATC	2 cut(s)	1027, 2008
BstMCI	CGRYCG	1 cut(s)	2108
BstMWI	GCNNNNNNNGC	1 cut(s)	1132
BstNSI	RCATGY	1 cut(s)	1508
BstUI	CGCG	1 cut(s)	1126
BstV1I	GCAGC	1 cut(s)	1730
BstZ17I	GTATAC	1 cut(s)	221
Bsu15I	ATCGAT	1 cut(s)	408
Bsu36I	CCTNAGG	1 cut(s)	1310
BsuRI	GGCC	4 cut(s)	389, 1038, 1308, 1546
BsuTUI	ATCGAT	1 cut(s)	408
BtsCI	GGATG	4 cut(s)	609, 1169, 1807, 2077
BtsIMutI	CAGTG	2 cut(s)	363, 877
Cac8I	GCNNGC	2 cut(s)	1363, 2021
Cfr13I	GGNCC	2 cut(s)	388, 1545
ClaI	ATCGAT	1 cut(s)	408
CseI	GACGC	1 cut(s)	512
Csp6I	GTAC	3 cut(s)	969, 1128, 1194
CspCI	CAANNNNNGTGG	4 cut(s)	352, 387, 526, 561
CviAII	CATG	8 cut(s)	157, 492, 581, 689, 1034, 1390, 1505, 2012
CviQI	GTAC	3 cut(s)	969, 1128, 1194
DdeI	CTNAG	5 cut(s)	366, 675, 1310, 1711, 2040
DpnI	GATC	2 cut(s)	1029, 2010
DpnII	GATC	2 cut(s)	1027, 2008
DraIII	CACNNNGTG	2 cut(s)	678, 809
DrdI	GACNNNNNNGTC	1 cut(s)	1244
DseDI	GACNNNNNNGTC	1 cut(s)	1244
EaeI	YGGCCR	1 cut(s)	1036
Eam1104I	CTCTTC	5 cut(s)	205, 648, 1298, 1710, 2038
EarI	CTCTTC	5 cut(s)	205, 648, 1298, 1710, 2038
Eco130I	CCWWGG	1 cut(s)	1226
Eco81I	CCTNAGG	1 cut(s)	1310
EcoRI	GAATTC	2 cut(s)	338, 692
EcoT14I	CCWWGG	1 cut(s)	1226
EcoT22I	ATGCAT	2 cut(s)	582, 1169
ErhI	CCWWGG	1 cut(s)	1226
FaeI	CATG	8 cut(s)	160, 495, 584, 692, 1037, 1393, 1508, 2015
FalI	AAGNNNNNCTT	2 cut(s)	645, 677
FaqI	GGGAC	2 cut(s)	1345, 2060
FatI	CATG	8 cut(s)	156, 491, 580, 688, 1033, 1389, 1504, 2011
FblI	GTMKAC	1 cut(s)	220
Fnu4HI	GCNGC	2 cut(s)	1716, 1719
FokI	GGATG	4 cut(s)	616, 1176, 1794, 2084
Fsp4HI	GCNGC	2 cut(s)	1716, 1719
FspBI	CTAG	6 cut(s)	392, 426, 782, 816, 1382, 1668
GluI	GCNGC	2 cut(s)	1716, 1719
HaeIII	GGCC	4 cut(s)	389, 1038, 1308, 1546
HgaI	GACGC	1 cut(s)	512
Hin1II	CATG	8 cut(s)	160, 495, 584, 692, 1037, 1393, 1508, 2015
HincII	GTYRAC	3 cut(s)	502, 745, 1348
HindII	GTYRAC	3 cut(s)	502, 745, 1348
HphI	GGTGA	4 cut(s)	542, 1150, 1442, 1465
Hpy166II	GTNNAC	5 cut(s)	221, 502, 745, 1348, 1512
Hpy188I	TCNGA	9 cut(s)	87, 280, 322, 603, 1490, 1640, 1974, 2041, 2082
Hpy188III	TCNNGA	4 cut(s)	144, 770, 782, 1621
Hpy8I	GTNNAC	5 cut(s)	221, 502, 745, 1348, 1512
Hpy99I	CGWCG	1 cut(s)	49
HpyAV	CCTTC	3 cut(s)	205, 903, 1600
HpyCH4III	ACNGT	4 cut(s)	64, 459, 1674, 2109
HpyCH4IV	ACGT	3 cut(s)	47, 566, 1239
HpyCH4V	TGCA	6 cut(s)	74, 580, 826, 1070, 1167, 2060
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1132
HpyF3I	CTNAG	5 cut(s)	366, 675, 1310, 1711, 2040
HpySE526I	ACGT	3 cut(s)	47, 566, 1239
Hsp92II	CATG	8 cut(s)	160, 495, 584, 692, 1037, 1393, 1508, 2015
Kzo9I	GATC	2 cut(s)	1027, 2008
Lsp1109I	GCAGC	1 cut(s)	1730
LweI	GCATC	5 cut(s)	594, 648, 1154, 1348, 1816
MaeI	CTAG	6 cut(s)	392, 426, 782, 816, 1382, 1668
MaeII	ACGT	3 cut(s)	47, 566, 1239
MaeIII	GTNAC	2 cut(s)	1726, 2114
MalI	GATC	2 cut(s)	1029, 2010
MboI	GATC	2 cut(s)	1027, 2008
MfeI	CAATTG	2 cut(s)	69, 736
MlsI	TGGCCA	1 cut(s)	1038
MluNI	TGGCCA	1 cut(s)	1038
MlyI	GAGTC	4 cut(s)	532, 1327, 1353, 1442
MmeI	TCCRAC	1 cut(s)	1912
Mox20I	TGGCCA	1 cut(s)	1038
Mph1103I	ATGCAT	2 cut(s)	582, 1169
MscI	TGGCCA	1 cut(s)	1038
MslI	CAYNNNNRTG	2 cut(s)	687, 1428
Msp20I	TGGCCA	1 cut(s)	1038
MunI	CAATTG	2 cut(s)	69, 736
Mva1269I	GAATGC	3 cut(s)	621, 838, 1167
MvnI	CGCG	1 cut(s)	1126
MwoI	GCNNNNNNNGC	1 cut(s)	1132
NdeII	GATC	2 cut(s)	1027, 2008
NlaIII	CATG	8 cut(s)	160, 495, 584, 692, 1037, 1393, 1508, 2015
NlaIV	GGNNCC	1 cut(s)	670
NmuCI	GTSAC	2 cut(s)	1726, 2114
NsiI	ATGCAT	2 cut(s)	582, 1169
NspI	RCATGY	1 cut(s)	1508
NspV	TTCGAA	1 cut(s)	295
PciI	ACATGT	1 cut(s)	1504
PctI	GAATGC	3 cut(s)	621, 838, 1167
PfeI	GAWTC	8 cut(s)	271, 778, 901, 1485, 1528, 1562, 1591, 1617
PflFI	GACNNNGTC	1 cut(s)	64
PflMI	CCANNNNNTGG	1 cut(s)	1578
PkrI	GCNGC	2 cut(s)	1717, 1720
PleI	GAGTC	4 cut(s)	531, 1327, 1352, 1441
PpsI	GAGTC	4 cut(s)	531, 1327, 1352, 1441
PscI	ACATGT	1 cut(s)	1504
PshBI	ATTAAT	1 cut(s)	1791
PspN4I	GGNNCC	1 cut(s)	670
PspPI	GGNCC	2 cut(s)	388, 1545
PsyI	GACNNNGTC	1 cut(s)	64
RsaI	GTAC	3 cut(s)	970, 1129, 1195
RsaNI	GTAC	3 cut(s)	969, 1128, 1194
RseI	CAYNNNNRTG	2 cut(s)	687, 1428
SatI	GCNGC	2 cut(s)	1716, 1719
Sau3AI	GATC	2 cut(s)	1027, 2008
Sau96I	GGNCC	2 cut(s)	388, 1545
SchI	GAGTC	4 cut(s)	532, 1327, 1353, 1442
SfaNI	GCATC	5 cut(s)	594, 648, 1154, 1348, 1816
SfuI	TTCGAA	1 cut(s)	295
SmiMI	CAYNNNNRTG	2 cut(s)	687, 1428
SmlI	CTYRAG	2 cut(s)	142, 1101
SmoI	CTYRAG	2 cut(s)	142, 1101
SpeI	ACTAGT	1 cut(s)	815
SsiI	CCGC	1 cut(s)	1716
SspI	AATATT	2 cut(s)	1058, 1255
SspMI	CTAG	6 cut(s)	392, 426, 782, 816, 1382, 1668
StyI	CCWWGG	1 cut(s)	1226
TaaI	ACNGT	4 cut(s)	64, 459, 1674, 2109
TaiI	ACGT	3 cut(s)	50, 569, 1242
TaqI	TCGA	4 cut(s)	44, 295, 408, 833
TatI	WGTACW	2 cut(s)	968, 1193
TauI	GCSGC	1 cut(s)	1718
TfiI	GAWTC	8 cut(s)	271, 778, 901, 1485, 1528, 1562, 1591, 1617
TscAI	CASTG	2 cut(s)	370, 877
TseFI	GTSAC	2 cut(s)	1726, 2114
TseI	GCWGC	1 cut(s)	1718
Tsp45I	GTSAC	2 cut(s)	1726, 2114
TspGWI	ACGGA	5 cut(s)	176, 790, 820, 1510, 1751
TspRI	CASTG	2 cut(s)	370, 877
Tth111I	GACNNNGTC	1 cut(s)	64
Van91I	CCANNNNNTGG	1 cut(s)	1578
VspI	ATTAAT	1 cut(s)	1791
XapI	RAATTY	6 cut(s)	314, 338, 692, 911, 1113, 1444
XbaI	TCTAGA	1 cut(s)	781
XceI	RCATGY	1 cut(s)	1508
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1555
XmiI	GTMKAC	1 cut(s)	220
XspI	CTAG	6 cut(s)	392, 426, 782, 816, 1382, 1668
Zsp2I	ATGCAT	2 cut(s)	582, 1169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.