Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012441

Physical Location & Seq

Genomic Coordinates Forward (+)

7436026 .. 7438011

Gene Structure 1986 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G21200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGCAACTCCAAACCCAATCCTTCGCTCTCAATCTTCTGCCATCTCCAAATTTCGCCAAACCCATCGAGAGACGTGAATTCATCTCTCTAAAACGAGACCCATCTCGTCCAATTTCACTCCGATGTTCCGTTTCCACGACTTTGGATACTCCGGCGACCGCTTCGACCCACAAGCCCTTTCCGGCGGAGGTTTCAAGGAGTATCATGGAGCTTTCATCTGTTGGAACTCTCTCCACTTTGACCCACGACGGTTGGCCTCTCGGCGTAGGAGTTCGCTTCGCCGTTGACAAAGATGGCACTCCTGTTCTTTGCCTCAATCGCTCTGTCTCTCCTGACAAGAGGTCTGCTCTTCATGTTCAGTTAGAACAATGTGGATTGAGGACTCCTCAGTGTACGATACAAGGTAGCATTGGTCGACCTGGAGACGATACTGTTCTAAAGCGTCTTAGTGCTACATGGAGGGAAAAGTTTGGCGAAGAAGTTAAGGAAGACAGTTTATATGTTGTTGCAGTTGACCGTGTTCTCCAAATGGAAGATTTCATGGAGGACGGAATCTGGGTGGCGTCATCAGATTACAAAAATGCAAGTCCTGACCCTCTTCGAGATATTGCAGAAGATATTGTCAACCAGATTAACGCTAACAACATGGAAGACATCTTCCGTTTCTGCAATGTATACGTGGATCTAGACTTTGTGGTTTCAGAAACAAAGATGATATGGATGGATAGGCTTGGATTCGACCTTCGGGTATGGTCTCCACGAGGTGTATATGATGTGAGGATTCCATTTCCAATGGAAGTAACAGATGAAAAGGGAGCAAAATCATCCTTCAATGGAATGTCACAGCTCGCTTGGGAAGTAGAGAAAAGCTATTGCCCTGCAGATTTCAACAAGGTCAAACTACTTAAGCAAGTTGTGGGATCATCTCATTCTCACAAGGGAGGAGGACAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009767 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0015979 GO:0018130 GO:0019222 GO:0019438 GO:0019684 GO:0022900 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0033013 GO:0033014 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043495 GO:0044237 GO:0044249 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051193 GO:0051194 GO:0055114 GO:0065007 GO:0070453 GO:0070455 GO:0071704 GO:1901360 GO:1901362 GO:1901401 GO:1901403 GO:1901463 GO:1901465 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2470

Protein Analysis

317

Amino Acids

35.46

Weight (kDa)

5.65

Isoelectric Point (pI)

46.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF2470	PF10615	205 - 276	1.7e-09	Domain of unknown function (DUF2470)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012441)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21200
fragaria_vesca	FvH4_6g37280
malus_domestica	MD09G1158800.v1.1
prunus_persica	Prupe.3G167000_v2.0.a1 Prupe.3G167000_v2.0.a1 Prupe.3G167000_v2.0.a1 Prupe.3G167000_v2.0.a1
pyrus_communis	pycom09g07740
rosa_chinensis	RchiOBHm_Chr2g0150111
rosa_laevigata	RLG00000020467
rosa_multiflora	Rmu_sc0005609.1_g000007 Rmu_sc0009445.1_g000004
rosa_roxburghii	Rroxscaffold_2G00097440
rosa_rugosa	Rorug02G0419200
rosa_samantha	Rh2AG477800 Rh2BG490400 Rh2CG464000 Rh2DG499200
rosa_wichuraiana	Rw2G039000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	415, 675
AciI	CCGC	2 cut(s)	159, 185
AclWI	GGATC	2 cut(s)	690, 928
AcsI	RAATTY	2 cut(s)	49, 77
AcyI	GRCGYC	1 cut(s)	563
AdeI	CACNNNGTG	1 cut(s)	764
AfaI	GTAC	1 cut(s)	394
AflII	CTTAAG	1 cut(s)	905
AgsI	TTSAA	3 cut(s)	195, 832, 889
AhdI	GACNNNNNGTC	1 cut(s)	340
AjiI	CACGTC	1 cut(s)	74
AjnI	CCWGG	1 cut(s)	418
AluBI	AGCT	3 cut(s)	211, 847, 870
AluI	AGCT	3 cut(s)	211, 847, 870
Alw26I	GTCTC	5 cut(s)	64, 90, 331, 417, 759
AlwI	GGATC	2 cut(s)	690, 928
AoxI	GGCC	1 cut(s)	254
ApoI	RAATTY	2 cut(s)	49, 77
BauI	CACGAG	1 cut(s)	759
BbsI	GAAGAC	2 cut(s)	495, 657
BccI	CCATC	5 cut(s)	49, 71, 109, 287, 715
BceAI	ACGGC	1 cut(s)	266
BciT130I	CCWGG	1 cut(s)	420
BciVI	GTATCC	1 cut(s)	139
BcoDI	GTCTC	5 cut(s)	64, 90, 331, 417, 759
BfaI	CTAG	1 cut(s)	686
BfmI	CTRYAG	1 cut(s)	879
BfrI	CTTAAG	1 cut(s)	905
BfuI	GTATCC	1 cut(s)	139
Bme1390I	CCNGG	1 cut(s)	420
BmeRI	GACNNNNNGTC	1 cut(s)	340
BmgBI	CACGTC	1 cut(s)	74
BmrFI	CCNGG	1 cut(s)	420
BpiI	GAAGAC	2 cut(s)	495, 657
BplI	GAGNNNNNCTC	4 cut(s)	331, 363, 370, 402
BpmI	CTGGAG	1 cut(s)	441
BsaAI	YACGTR	1 cut(s)	679
BsaHI	GRCGYC	1 cut(s)	563
BsaI	GGTCTC	2 cut(s)	90, 759
Bse3DI	GCAATG	1 cut(s)	676
BseBI	CCWGG	1 cut(s)	420
BseGI	GGATG	2 cut(s)	726, 824
BseMI	GCAATG	1 cut(s)	676
BseMII	CTCAG	1 cut(s)	401
BseRI	GAGGAG	1 cut(s)	375
Bsh1285I	CGRYCG	1 cut(s)	159
BshFI	GGCC	1 cut(s)	256
BsiEI	CGRYCG	1 cut(s)	159
BsiSI	CCGG	2 cut(s)	152, 182
BsmAI	GTCTC	5 cut(s)	64, 90, 331, 417, 759
BsmBI	CGTCTC	2 cut(s)	64, 417
BsnI	GGCC	1 cut(s)	256
Bso31I	GGTCTC	2 cut(s)	90, 759
Bsp143I	GATC	2 cut(s)	682, 920
BspACI	CCGC	2 cut(s)	159, 185
BspANI	GGCC	1 cut(s)	256
BspCNI	CTCAG	1 cut(s)	400
BspMAI	CTGCAG	1 cut(s)	883
BspPI	GGATC	2 cut(s)	690, 928
BspQI	GCTCTTC	1 cut(s)	354
BspTI	CTTAAG	1 cut(s)	905
BspTNI	GGTCTC	2 cut(s)	90, 759
BsrDI	GCAATG	1 cut(s)	676
BssMI	GATC	2 cut(s)	682, 920
BssNAI	GTATAC	1 cut(s)	676
BssNI	GRCGYC	1 cut(s)	563
BssSI	CACGAG	1 cut(s)	759
Bst1107I	GTATAC	1 cut(s)	676
Bst2BI	CACGAG	1 cut(s)	759
Bst2UI	CCWGG	1 cut(s)	420
Bst4CI	ACNGT	4 cut(s)	251, 433, 494, 518
Bst6I	CTCTTC	2 cut(s)	354, 603
BstACI	GRCGYC	1 cut(s)	563
BstAFI	CTTAAG	1 cut(s)	905
BstBAI	YACGTR	1 cut(s)	679
BstC8I	GCNNGC	1 cut(s)	849
BstDEI	CTNAG	2 cut(s)	387, 446
BstF5I	GGATG	2 cut(s)	726, 824
BstKTI	GATC	2 cut(s)	685, 923
BstMAI	GTCTC	5 cut(s)	64, 90, 331, 417, 759
BstMBI	GATC	2 cut(s)	682, 920
BstMCI	CGRYCG	1 cut(s)	159
BstMWI	GCNNNNNNNGC	1 cut(s)	318
BstNI	CCWGG	1 cut(s)	420
BstSCI	CCNGG	1 cut(s)	418
BstSFI	CTRYAG	1 cut(s)	879
BstV2I	GAAGAC	2 cut(s)	495, 657
BstX2I	RGATCY	1 cut(s)	682
BstXI	CCANNNNNNTGG	1 cut(s)	142
BstYI	RGATCY	1 cut(s)	682
BstZ17I	GTATAC	1 cut(s)	676
BsuI	GTATCC	1 cut(s)	139
BsuRI	GGCC	1 cut(s)	256
BtrI	CACGTC	1 cut(s)	74
BtsCI	GGATG	2 cut(s)	726, 824
BtsIMutI	CAGTG	1 cut(s)	395
Cac8I	GCNNGC	1 cut(s)	849
CseI	GACGC	2 cut(s)	431, 552
Csp6I	GTAC	1 cut(s)	393
CspCI	CAANNNNNGTGG	2 cut(s)	233, 268
CviAII	CATG	5 cut(s)	205, 353, 456, 541, 646
CviJI	RGCY	6 cut(s)	175, 211, 256, 730, 847, 870
CviKI_1	RGCY	6 cut(s)	175, 211, 256, 730, 847, 870
CviQI	GTAC	1 cut(s)	393
DdeI	CTNAG	2 cut(s)	387, 446
DpnI	GATC	2 cut(s)	684, 922
DpnII	GATC	2 cut(s)	682, 920
DraIII	CACNNNGTG	1 cut(s)	764
DriI	GACNNNNNGTC	1 cut(s)	340
Eam1104I	CTCTTC	2 cut(s)	354, 603
Eam1105I	GACNNNNNGTC	1 cut(s)	340
EarI	CTCTTC	2 cut(s)	354, 603
EciI	GGCGGA	1 cut(s)	200
Eco31I	GGTCTC	2 cut(s)	90, 759
EcoRI	GAATTC	1 cut(s)	77
EcoRII	CCWGG	1 cut(s)	418
Esp3I	CGTCTC	2 cut(s)	64, 417
FaeI	CATG	5 cut(s)	208, 356, 459, 544, 649
FatI	CATG	5 cut(s)	204, 352, 455, 540, 645
FblI	GTMKAC	2 cut(s)	415, 675
FokI	GGATG	2 cut(s)	733, 811
FspBI	CTAG	1 cut(s)	686
GsuI	CTGGAG	1 cut(s)	441
HaeIII	GGCC	1 cut(s)	256
HapII	CCGG	2 cut(s)	152, 182
HgaI	GACGC	2 cut(s)	431, 552
Hin1I	GRCGYC	1 cut(s)	563
Hin1II	CATG	5 cut(s)	208, 356, 459, 544, 649
HincII	GTYRAC	4 cut(s)	286, 416, 514, 625
HindII	GTYRAC	4 cut(s)	286, 416, 514, 625
HinfI	GANTC	4 cut(s)	382, 552, 735, 781
HpaII	CCGG	2 cut(s)	152, 182
Hpy166II	GTNNAC	6 cut(s)	286, 393, 416, 514, 625, 676
Hpy188I	TCNGA	3 cut(s)	122, 571, 703
Hpy188III	TCNNGA	5 cut(s)	67, 332, 590, 602, 686
Hpy8I	GTNNAC	6 cut(s)	286, 393, 416, 514, 625, 676
Hpy99I	CGWCG	1 cut(s)	251
HpyAV	CCTTC	3 cut(s)	31, 752, 838
HpyCH4III	ACNGT	4 cut(s)	251, 433, 494, 518
HpyCH4IV	ACGT	2 cut(s)	73, 678
HpyCH4V	TGCA	6 cut(s)	4, 509, 584, 611, 669, 881
HpyF10VI	GCNNNNNNNGC	1 cut(s)	318
HpyF3I	CTNAG	2 cut(s)	387, 446
HpySE526I	ACGT	2 cut(s)	73, 678
Hsp92I	GRCGYC	1 cut(s)	563
Hsp92II	CATG	5 cut(s)	208, 356, 459, 544, 649
Kzo9I	GATC	2 cut(s)	682, 920
LguI	GCTCTTC	1 cut(s)	354
LmnI	GCTCC	2 cut(s)	208, 815
MaeI	CTAG	1 cut(s)	686
MaeII	ACGT	2 cut(s)	73, 678
MaeIII	GTNAC	2 cut(s)	799, 840
MalI	GATC	2 cut(s)	684, 922
MboI	GATC	2 cut(s)	682, 920
MboII	GAAGA	9 cut(s)	26, 341, 488, 500, 545, 590, 626, 649, 662
MflI	RGATCY	1 cut(s)	682
MluCI	AATT	3 cut(s)	49, 77, 111
MlyI	GAGTC	1 cut(s)	376
MmeI	TCCRAC	1 cut(s)	202
MseI	TTAA	3 cut(s)	483, 633, 906
MslI	CAYNNNNRTG	1 cut(s)	121
MspCI	CTTAAG	1 cut(s)	905
MspI	CCGG	2 cut(s)	152, 182
MspR9I	CCNGG	1 cut(s)	420
MvaI	CCWGG	1 cut(s)	420
MwoI	GCNNNNNNNGC	1 cut(s)	318
NdeII	GATC	2 cut(s)	682, 920
NlaIII	CATG	5 cut(s)	208, 356, 459, 544, 649
NmeAIII	GCCGAG	1 cut(s)	240
NmuCI	GTSAC	1 cut(s)	840
PciSI	GCTCTTC	1 cut(s)	354
PfeI	GAWTC	3 cut(s)	552, 735, 781
PleI	GAGTC	1 cut(s)	376
PpsI	GAGTC	1 cut(s)	376
Ppu21I	YACGTR	1 cut(s)	679
Psp6I	CCWGG	1 cut(s)	418
PspGI	CCWGG	1 cut(s)	418
PstI	CTGCAG	1 cut(s)	883
PsuI	RGATCY	1 cut(s)	682
RsaI	GTAC	1 cut(s)	394
RsaNI	GTAC	1 cut(s)	393
RseI	CAYNNNNRTG	1 cut(s)	121
SalI	GTCGAC	1 cut(s)	414
SapI	GCTCTTC	1 cut(s)	354
SaqAI	TTAA	3 cut(s)	483, 633, 906
Sau3AI	GATC	2 cut(s)	682, 920
SchI	GAGTC	1 cut(s)	376
ScrFI	CCNGG	1 cut(s)	420
SfcI	CTRYAG	1 cut(s)	879
SmiMI	CAYNNNNRTG	1 cut(s)	121
SmlI	CTYRAG	1 cut(s)	905
SmoI	CTYRAG	1 cut(s)	905
Sse9I	AATT	3 cut(s)	49, 77, 111
SsiI	CCGC	2 cut(s)	159, 185
SspMI	CTAG	1 cut(s)	686
StyD4I	CCNGG	1 cut(s)	418
TaaI	ACNGT	4 cut(s)	251, 433, 494, 518
TaiI	ACGT	2 cut(s)	76, 681
TaqI	TCGA	5 cut(s)	66, 164, 415, 601, 738
TasI	AATT	3 cut(s)	49, 77, 111
TfiI	GAWTC	3 cut(s)	552, 735, 781
Tru1I	TTAA	3 cut(s)	483, 633, 906
Tru9I	TTAA	3 cut(s)	483, 633, 906
TscAI	CASTG	1 cut(s)	395
TseFI	GTSAC	1 cut(s)	840
Tsp45I	GTSAC	1 cut(s)	840
TspDTI	ATGAA	5 cut(s)	70, 204, 341, 529, 822
TspGWI	ACGGA	3 cut(s)	118, 564, 650
TspRI	CASTG	1 cut(s)	395
Vha464I	CTTAAG	1 cut(s)	905
XapI	RAATTY	2 cut(s)	49, 77
XbaI	TCTAGA	1 cut(s)	685
XmiI	GTMKAC	2 cut(s)	415, 675
XspI	CTAG	1 cut(s)	686

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.