Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0012441

Physical Location & Seq

Genomic Coordinates Forward (+)

5881466 .. 5884552

Gene Structure 3087 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g07740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGCTTCTCCAAACTCAATCTCTCACAACCCATTTGTCCCTTCCACTCCCTCCCTCAAAACCCACGCCCAAAATCCTATCTTTCACTCCCATAAAACAGAACCCATTTCGCAGAACTAGGTTCAGAGCCCTAAGATGCTCGCTTTCGGCGGTTTCGGAGCCGACCCAGTTGGAAACGAAGACTCACAAACCGGTTCCAGCTGAGGTTTCCAGGACAATTATGGAGTTGGTGTCTGTGGGCACGCTTTCTACTCTGACTCAAGAGGGTTGGCCTTTGGGGATTGGCGTTCGGTTCGCGGTCGACCCGGAAGGGACTCCGGTGTTGTGCTTGAATGCCTCTAATCGGCAGTTTTCTATTGACAGGAGGTCTAGCTTCCATGTCCAGTTGGAGCAAAGCGGGCTGCGGACACCTCAGTGCACGATTTTAGGCAGCATTGACAAACCAGAAAATAGGGCAATGTTGAAGTTGGAGGACTTTAAAGAGGTTGGTATGTGGGTTACATCTTCAGATTATAAAAATGCACAACCTGATCCTCTTAGGGATTTTGCGGTAAAGCTAGTGAATGAGATAAACACCAACAACATTGAAGATATTAATCGTTTTTGCAACATCTATGCTGATTTGAACTTCCAGGTTTCTGAAGCAAAACTGGTTTGGGTTGATCGGTTAGGCTTTGACCTGCATCTCTGGTCTCCTCAGGAAGGTATATTTGAGGTTCGCATTCCCTTCTCCCGGGAGGTGACGGATGAGAAGGGTGCAAAGTCAATGTTTAACTGCATGTCTCAATTAGCTTGGGAGGTGGAAAAGAATTTCCACGCCCCAGATTTCGAAAGGGTGAAACAAGTTAAGAAGATAGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009767 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0015979 GO:0018130 GO:0019222 GO:0019438 GO:0019684 GO:0022900 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0033013 GO:0033014 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043495 GO:0044237 GO:0044249 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051193 GO:0051194 GO:0055114 GO:0065007 GO:0070453 GO:0070455 GO:0071704 GO:1901360 GO:1901362 GO:1901401 GO:1901403 GO:1901463 GO:1901465 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2470

Protein Analysis

287

Amino Acids

32.51

Weight (kDa)

8.25

Isoelectric Point (pI)

44.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF2470	PF10615	186 - 256	8.4e-09	Domain of unknown function (DUF2470)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012441)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21200
fragaria_vesca	FvH4_6g37280
malus_domestica	MD09G1158800.v1.1
prunus_persica	Prupe.3G167000_v2.0.a1 Prupe.3G167000_v2.0.a1 Prupe.3G167000_v2.0.a1 Prupe.3G167000_v2.0.a1
pyrus_communis	pycom09g07740
rosa_chinensis	RchiOBHm_Chr2g0150111
rosa_laevigata	RLG00000020467
rosa_multiflora	Rmu_sc0005609.1_g000007 Rmu_sc0009445.1_g000004
rosa_roxburghii	Rroxscaffold_2G00097440
rosa_rugosa	Rorug02G0419200
rosa_samantha	Rh2AG477800 Rh2BG490400 Rh2CG464000 Rh2DG499200
rosa_wichuraiana	Rw2G039000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	513
Acc36I	ACCTGC	1 cut(s)	687
AccI	GTMKAC	1 cut(s)	300
AccII	CGCG	1 cut(s)	296
AciI	CCGC	5 cut(s)	149, 296, 396, 403, 548
AclWI	GGATC	1 cut(s)	524
AcsI	RAATTY	1 cut(s)	808
AcuI	CTGAAG	2 cut(s)	489, 660
AfiI	CCNNNNNNNGG	3 cut(s)	342, 701, 732
AgeI	ACCGGT	1 cut(s)	190
AgsI	TTSAA	4 cut(s)	331, 463, 587, 625
AhdI	GACNNNNNGTC	1 cut(s)	364
AjnI	CCWGG	2 cut(s)	209, 630
AleI	CACNNNNGTG	1 cut(s)	412
AluBI	AGCT	4 cut(s)	200, 372, 556, 791
AluI	AGCT	4 cut(s)	200, 372, 556, 791
Alw21I	GWGCWC	1 cut(s)	419
Alw26I	GTCTC	2 cut(s)	696, 786
Alw44I	GTGCAC	1 cut(s)	415
AlwI	GGATC	1 cut(s)	524
Ama87I	CYCGRG	1 cut(s)	732
AoxI	GGCC	1 cut(s)	269
ApaLI	GTGCAC	1 cut(s)	415
ApeKI	GCWGC	2 cut(s)	400, 429
ApoI	RAATTY	1 cut(s)	808
AseI	ATTAAT	1 cut(s)	594
AsiGI	ACCGGT	1 cut(s)	190
AsuC2I	CCSGG	3 cut(s)	305, 733, 734
AsuHPI	GGTGA	2 cut(s)	751, 847
AsuII	TTCGAA	1 cut(s)	828
AvaI	CYCGRG	1 cut(s)	732
AxyI	CCTNAGG	1 cut(s)	696
BaeGI	GKGCMC	2 cut(s)	242, 419
BanII	GRGCYC	1 cut(s)	130
BbsI	GAAGAC	1 cut(s)	185
Bbv12I	GWGCWC	1 cut(s)	419
BbvCI	CCTCAGC	1 cut(s)	201
BbvI	GCAGC	2 cut(s)	387, 441
BciT130I	CCWGG	2 cut(s)	211, 632
BcnI	CCSGG	3 cut(s)	305, 733, 734
BcoDI	GTCTC	2 cut(s)	696, 786
BfaI	CTAG	3 cut(s)	117, 369, 557
BfuAI	ACCTGC	1 cut(s)	687
BisI	GCNGC	2 cut(s)	401, 430
BlsI	GCNGC	2 cut(s)	402, 431
Bme1390I	CCNGG	5 cut(s)	211, 305, 632, 733, 734
BmeRI	GACNNNNNGTC	1 cut(s)	364
BmeT110I	CYCGRG	1 cut(s)	732
BmiI	GGNNCC	2 cut(s)	159, 195
BmrFI	CCNGG	5 cut(s)	211, 305, 632, 733, 734
BmrI	ACTGGG	1 cut(s)	160
BmsI	GCATC	2 cut(s)	125, 691
BmuI	ACTGGG	1 cut(s)	160
BpiI	GAAGAC	1 cut(s)	185
Bpu10I	CCTNAGC	1 cut(s)	201
Bpu14I	TTCGAA	1 cut(s)	828
BpuEI	CTTGAG	1 cut(s)	243
BpuMI	CCSGG	3 cut(s)	305, 733, 734
BsaBI	GATNNNNATC	1 cut(s)	594
BsaI	GGTCTC	1 cut(s)	696
BsaJI	CCNNGG	1 cut(s)	732
BsaWI	WCCGGW	2 cut(s)	190, 316
BsaXI	ACNNNNNCTCC	2 cut(s)	215, 245
Bsc4I	CCNNNNNNNGG	3 cut(s)	342, 701, 732
Bse118I	RCCGGY	1 cut(s)	190
Bse1I	ACTGG	3 cut(s)	166, 382, 654
Bse21I	CCTNAGG	1 cut(s)	696
Bse3DI	GCAATG	1 cut(s)	462
Bse8I	GATNNNNATC	1 cut(s)	594
BseBI	CCWGG	2 cut(s)	211, 632
BseDI	CCNNGG	1 cut(s)	732
BseGI	GGATG	1 cut(s)	751
BseJI	GATNNNNATC	1 cut(s)	594
BseLI	CCNNNNNNNGG	3 cut(s)	342, 701, 732
BseMI	GCAATG	1 cut(s)	462
BseMII	CTCAG	3 cut(s)	192, 425, 710
BseNI	ACTGG	3 cut(s)	166, 382, 654
BseRI	GAGGAG	1 cut(s)	684
BseSI	GKGCMC	2 cut(s)	242, 419
BseXI	GCAGC	2 cut(s)	387, 441
Bsh1236I	CGCG	1 cut(s)	296
Bsh1285I	CGRYCG	1 cut(s)	300
BshFI	GGCC	1 cut(s)	271
BshTI	ACCGGT	1 cut(s)	190
BsiEI	CGRYCG	1 cut(s)	300
BsiHKAI	GWGCWC	1 cut(s)	419
BsiHKCI	CYCGRG	1 cut(s)	732
BsiSI	CCGG	4 cut(s)	191, 305, 317, 733
BslFI	GGGAC	2 cut(s)	22, 325
BslI	CCNNNNNNNGG	3 cut(s)	342, 701, 732
BsmAI	GTCTC	2 cut(s)	696, 786
BsmFI	GGGAC	2 cut(s)	22, 325
BsmI	GAATGC	2 cut(s)	337, 720
BsnI	GGCC	1 cut(s)	271
Bso31I	GGTCTC	1 cut(s)	696
BsoBI	CYCGRG	1 cut(s)	732
Bsp119I	TTCGAA	1 cut(s)	828
Bsp1286I	GDGCHC	3 cut(s)	130, 242, 419
Bsp143I	GATC	2 cut(s)	529, 661
BspACI	CCGC	5 cut(s)	149, 296, 396, 403, 548
BspANI	GGCC	1 cut(s)	271
BspCNI	CTCAG	3 cut(s)	193, 424, 709
BspFNI	CGCG	1 cut(s)	296
BspLI	GGNNCC	2 cut(s)	159, 195
BspMI	ACCTGC	1 cut(s)	687
BspPI	GGATC	1 cut(s)	524
BspT104I	TTCGAA	1 cut(s)	828
BspTNI	GGTCTC	1 cut(s)	696
BsrDI	GCAATG	1 cut(s)	462
BsrFI	RCCGGY	1 cut(s)	190
BsrI	ACTGG	3 cut(s)	166, 382, 654
BssAI	RCCGGY	1 cut(s)	190
BssECI	CCNNGG	1 cut(s)	732
BssMI	GATC	2 cut(s)	529, 661
Bst2UI	CCWGG	2 cut(s)	211, 632
BstBI	TTCGAA	1 cut(s)	828
BstC8I	GCNNGC	3 cut(s)	140, 242, 398
BstDEI	CTNAG	5 cut(s)	131, 201, 411, 536, 696
BstENI	CCTNNNNNAGG	1 cut(s)	699
BstF5I	GGATG	1 cut(s)	751
BstFNI	CGCG	1 cut(s)	296
BstKTI	GATC	2 cut(s)	532, 664
BstMAI	GTCTC	2 cut(s)	696, 786
BstMBI	GATC	2 cut(s)	529, 661
BstMCI	CGRYCG	1 cut(s)	300
BstMWI	GCNNNNNNNGC	1 cut(s)	397
BstNI	CCWGG	2 cut(s)	211, 632
BstNSI	RCATGY	1 cut(s)	781
BstSCI	CCNGG	5 cut(s)	209, 303, 630, 731, 732
BstSLI	GKGCMC	2 cut(s)	242, 419
BstUI	CGCG	1 cut(s)	296
BstV1I	GCAGC	2 cut(s)	387, 441
BstV2I	GAAGAC	1 cut(s)	185
Bsu36I	CCTNAGG	1 cut(s)	696
BsuRI	GGCC	1 cut(s)	271
BtsCI	GGATG	1 cut(s)	751
BtsIMutI	CAGTG	1 cut(s)	419
BveI	ACCTGC	1 cut(s)	687
Cac8I	GCNNGC	3 cut(s)	140, 242, 398
Cfr10I	RCCGGY	1 cut(s)	190
Cfr9I	CCCGGG	1 cut(s)	732
CspAI	ACCGGT	1 cut(s)	190
CviAII	CATG	2 cut(s)	377, 778
DdeI	CTNAG	5 cut(s)	131, 201, 411, 536, 696
DpnI	GATC	2 cut(s)	531, 663
DpnII	GATC	2 cut(s)	529, 661
DraI	TTTAAA	1 cut(s)	478
DriI	GACNNNNNGTC	1 cut(s)	364
Eam1105I	GACNNNNNGTC	1 cut(s)	364
Eco24I	GRGCYC	1 cut(s)	130
Eco31I	GGTCTC	1 cut(s)	696
Eco57I	CTGAAG	2 cut(s)	489, 660
Eco81I	CCTNAGG	1 cut(s)	696
Eco88I	CYCGRG	1 cut(s)	732
EcoNI	CCTNNNNNAGG	1 cut(s)	699
EcoRII	CCWGG	2 cut(s)	209, 630
EcoT38I	GRGCYC	1 cut(s)	130
FaeI	CATG	2 cut(s)	380, 781
FaiI	YATR	8 cut(s)	92, 221, 378, 491, 513, 615, 707, 779
FaqI	GGGAC	2 cut(s)	22, 325
FatI	CATG	2 cut(s)	376, 777
FauI	CCCGC	1 cut(s)	389
FblI	GTMKAC	1 cut(s)	300
Fnu4HI	GCNGC	2 cut(s)	401, 430
FokI	GGATG	1 cut(s)	758
FriOI	GRGCYC	1 cut(s)	130
Fsp4HI	GCNGC	2 cut(s)	401, 430
FspBI	CTAG	3 cut(s)	117, 369, 557
GluI	GCNGC	2 cut(s)	401, 430
HaeIII	GGCC	1 cut(s)	271
HapII	CCGG	4 cut(s)	191, 305, 317, 733
Hin1II	CATG	2 cut(s)	380, 781
HincII	GTYRAC	1 cut(s)	301
HindII	GTYRAC	1 cut(s)	301
HinfI	GANTC	3 cut(s)	181, 256, 313
HpaII	CCGG	4 cut(s)	191, 305, 317, 733
HphI	GGTGA	2 cut(s)	751, 847
Hpy166II	GTNNAC	2 cut(s)	301, 417
Hpy188I	TCNGA	5 cut(s)	125, 157, 255, 508, 640
Hpy188III	TCNNGA	2 cut(s)	260, 698
Hpy8I	GTNNAC	2 cut(s)	301, 417
HpyAV	CCTTC	5 cut(s)	50, 302, 695, 736, 745
HpyCH4V	TGCA	6 cut(s)	417, 521, 606, 682, 758, 777
HpyF10VI	GCNNNNNNNGC	1 cut(s)	397
HpyF3I	CTNAG	5 cut(s)	131, 201, 411, 536, 696
Hsp92II	CATG	2 cut(s)	380, 781
Kzo9I	GATC	2 cut(s)	529, 661
LmnI	GCTCC	2 cut(s)	157, 388
Lsp1109I	GCAGC	2 cut(s)	387, 441
LweI	GCATC	2 cut(s)	125, 691
MaeI	CTAG	3 cut(s)	117, 369, 557
MaeIII	GTNAC	2 cut(s)	496, 739
MalI	GATC	2 cut(s)	531, 663
MboI	GATC	2 cut(s)	529, 661
MboII	GAAGA	3 cut(s)	190, 495, 599
MhlI	GDGCHC	3 cut(s)	130, 242, 419
MluCI	AATT	3 cut(s)	216, 785, 808
MlyI	GAGTC	3 cut(s)	175, 250, 307
MmeI	TCCRAC	3 cut(s)	150, 366, 447
MseI	TTAA	4 cut(s)	477, 594, 771, 846
MslI	CAYNNNNRTG	1 cut(s)	412
MspA1I	CMGCKG	1 cut(s)	200
MspI	CCGG	4 cut(s)	191, 305, 317, 733
MspR9I	CCNGG	5 cut(s)	211, 305, 632, 733, 734
Mva1269I	GAATGC	2 cut(s)	337, 720
MvaI	CCWGG	2 cut(s)	211, 632
MvnI	CGCG	1 cut(s)	296
MwoI	GCNNNNNNNGC	1 cut(s)	397
NciI	CCSGG	3 cut(s)	305, 733, 734
NdeII	GATC	2 cut(s)	529, 661
NlaIII	CATG	2 cut(s)	380, 781
NlaIV	GGNNCC	2 cut(s)	159, 195
NmuCI	GTSAC	1 cut(s)	739
NspI	RCATGY	1 cut(s)	781
NspV	TTCGAA	1 cut(s)	828
OliI	CACNNNNGTG	1 cut(s)	412
PctI	GAATGC	2 cut(s)	337, 720
PfoI	TCCNGGA	1 cut(s)	209
PinAI	ACCGGT	1 cut(s)	190
PkrI	GCNGC	2 cut(s)	402, 431
PleI	GAGTC	3 cut(s)	175, 250, 307
PpsI	GAGTC	3 cut(s)	175, 250, 307
PshBI	ATTAAT	1 cut(s)	594
PsiI	TTATAA	1 cut(s)	513
Psp6I	CCWGG	2 cut(s)	209, 630
PspGI	CCWGG	2 cut(s)	209, 630
PspN4I	GGNNCC	2 cut(s)	159, 195
PvuII	CAGCTG	1 cut(s)	200
RseI	CAYNNNNRTG	1 cut(s)	412
SalI	GTCGAC	1 cut(s)	299
SaqAI	TTAA	4 cut(s)	477, 594, 771, 846
SatI	GCNGC	2 cut(s)	401, 430
Sau3AI	GATC	2 cut(s)	529, 661
SchI	GAGTC	3 cut(s)	175, 250, 307
ScrFI	CCNGG	5 cut(s)	211, 305, 632, 733, 734
SduI	GDGCHC	3 cut(s)	130, 242, 419
SfaNI	GCATC	2 cut(s)	125, 691
SfuI	TTCGAA	1 cut(s)	828
SmaI	CCCGGG	1 cut(s)	734
SmiMI	CAYNNNNRTG	1 cut(s)	412
SmlI	CTYRAG	1 cut(s)	258
SmoI	CTYRAG	1 cut(s)	258
Sse9I	AATT	3 cut(s)	216, 785, 808
SsiI	CCGC	5 cut(s)	149, 296, 396, 403, 548
SspMI	CTAG	3 cut(s)	117, 369, 557
StyD4I	CCNGG	5 cut(s)	209, 303, 630, 731, 732
TaqI	TCGA	2 cut(s)	300, 828
TasI	AATT	3 cut(s)	216, 785, 808
Tru1I	TTAA	4 cut(s)	477, 594, 771, 846
Tru9I	TTAA	4 cut(s)	477, 594, 771, 846
TscAI	CASTG	1 cut(s)	419
TseFI	GTSAC	1 cut(s)	739
TseI	GCWGC	2 cut(s)	400, 429
Tsp45I	GTSAC	1 cut(s)	739
TspGWI	ACGGA	1 cut(s)	758
TspMI	CCCGGG	1 cut(s)	732
TspRI	CASTG	1 cut(s)	419
VneI	GTGCAC	1 cut(s)	415
VspI	ATTAAT	1 cut(s)	594
XagI	CCTNNNNNAGG	1 cut(s)	699
XapI	RAATTY	1 cut(s)	808
XceI	RCATGY	1 cut(s)	781
XcmI	CCANNNNNNNNNTGG	1 cut(s)	217
XmaI	CCCGGG	1 cut(s)	732
XmiI	GTMKAC	1 cut(s)	300
XspI	CTAG	3 cut(s)	117, 369, 557

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.