Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0012441

Physical Location & Seq

Genomic Coordinates Reverse (-)

29370668 .. 29373863

Gene Structure 3196 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g37280.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGCTTCTCCAAACCCAATGCCTCACTTCCCATCTCCCTCTCCTCCCATTCCCTCCTCCAAAACCCATTTCCAAAACCCACTTCTTCAACCCCAACCCACTTCGCACACCTCCAAGATGCTCCCTTTCCGCCGTTTCCGACCCGACCCATCTCCAAAACCCGACCACCAAGCCCTTCCCGGCCGAGGTTTCACGGACCATTCTGGAGTTGGTCTCTGTGGGCACCCTTTCCACTTTAACCCAACAAGGTTGGCCTTTGGGCATCGGGGTTCGCTTTGCTGTTGACCCACAAGGGACTCCCGTCTTGTGCTTGGACGGCTCAGATAGACAGCTCTCTATTGACAGGAGGTCTAGTCTCCATGTTCAGTTGGAGCAGTTTGGGTTGAGGACGCCGCAGTGTACCATATTAGGCAGCATTGACAAGCCAGAAGACAGCAAGTTTTTGAAGTATCTTCATTCGGTGTGGAGAAAAAGGTTTGAAGAAGAAGTTGATGAAGATCTTCTATATGTTGTTGACGTGGACCGAGTGCTTCAGATGGAGGACTTTAGAGAGGTTGGTACATGGGTCACATCTTCAGATTATAAAAATGCTCAACCTGATCCTCTTCGAGACTCTTCAGAAAAGTTAGTGAATGATATAAACACCAACAATATTGAAGACATTAACCGTTTTTGCAACATTTATGCTGATTTGGACTTCCAGGTATCTGAAGCAAAGTTGGTTTGGATTGATCGGCTGGGGCTTGATATGCGTCTCTTTTCTCCTCAGAATGGTATTTTCGAGGTTCGCATTCCCTTCCCCAGAGATGTAACAGATGAAAAAGGTGCAAAGTCAATGTTCAATTGTATGGCGCAATTAGCATGGGAGGTCGAAAAGAATTTCCATGCCCCAGATTTTGAGAAGGTGAAACAAGTTAAGCAGATAAGCAAAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009767 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0015979 GO:0018130 GO:0019222 GO:0019438 GO:0019684 GO:0022900 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0033013 GO:0033014 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043495 GO:0044237 GO:0044249 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051193 GO:0051194 GO:0055114 GO:0065007 GO:0070453 GO:0070455 GO:0071704 GO:1901360 GO:1901362 GO:1901401 GO:1901403 GO:1901463 GO:1901465 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2470

Protein Analysis

312

Amino Acids

35.5

Weight (kDa)

5.47

Isoelectric Point (pI)

40.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF2470	PF10615	207 - 279	2.9e-09	Domain of unknown function (DUF2470)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0012441)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21200
fragaria_vesca	FvH4_6g37280
malus_domestica	MD09G1158800.v1.1
prunus_persica	Prupe.3G167000_v2.0.a1 Prupe.3G167000_v2.0.a1 Prupe.3G167000_v2.0.a1 Prupe.3G167000_v2.0.a1
pyrus_communis	pycom09g07740
rosa_chinensis	RchiOBHm_Chr2g0150111
rosa_laevigata	RLG00000020467
rosa_multiflora	Rmu_sc0005609.1_g000007 Rmu_sc0009445.1_g000004
rosa_roxburghii	Rroxscaffold_2G00097440
rosa_rugosa	Rorug02G0419200
rosa_samantha	Rh2AG477800 Rh2BG490400 Rh2CG464000 Rh2DG499200
rosa_wichuraiana	Rw2G039000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	582
AccB1I	GGYRCC	1 cut(s)	221
AciI	CCGC	2 cut(s)	129, 392
AclWI	GGATC	1 cut(s)	593
AcoI	YGGCCR	1 cut(s)	180
AcsI	RAATTY	1 cut(s)	877
AcuI	CTGAAG	4 cut(s)	515, 558, 600, 729
AcyI	GRCGYC	1 cut(s)	389
AfaI	GTAC	2 cut(s)	400, 559
AfiI	CCNNNNNNNGG	2 cut(s)	184, 770
AgsI	TTSAA	5 cut(s)	88, 445, 479, 656, 841
AhdI	GACNNNNNGTC	1 cut(s)	346
AjiI	CACGTC	1 cut(s)	517
AjnI	CCWGG	1 cut(s)	699
AjuI	GAANNNNNNNTTGG	4 cut(s)	52, 65, 84, 97
AluBI	AGCT	1 cut(s)	331
AluI	AGCT	1 cut(s)	331
Alw26I	GTCTC	4 cut(s)	217, 359, 603, 758
AlwI	GGATC	1 cut(s)	593
AoxI	GGCC	2 cut(s)	180, 251
ApeKI	GCWGC	1 cut(s)	411
ApoI	RAATTY	1 cut(s)	877
Asp700I	GAANNNNTTC	1 cut(s)	498
AspLEI	GCGC	1 cut(s)	853
AspS9I	GGNCC	2 cut(s)	195, 520
AsuC2I	CCSGG	1 cut(s)	179
AsuHPI	GGTGA	1 cut(s)	916
AvaII	GGWCC	2 cut(s)	195, 520
BaeGI	GKGCMC	1 cut(s)	224
BaeI	ACNNNNGTAYC	2 cut(s)	549, 582
BanI	GGYRCC	1 cut(s)	221
BbsI	GAAGAC	2 cut(s)	435, 663
BbvI	GCAGC	1 cut(s)	423
BccI	CCATC	3 cut(s)	39, 156, 529
BceAI	ACGGC	2 cut(s)	116, 331
BciT130I	CCWGG	1 cut(s)	701
BcnI	CCSGG	1 cut(s)	179
BcoDI	GTCTC	4 cut(s)	217, 359, 603, 758
BfaI	CTAG	1 cut(s)	351
BglII	AGATCT	1 cut(s)	496
BisI	GCNGC	2 cut(s)	392, 412
BlsI	GCNGC	2 cut(s)	393, 413
Bme1390I	CCNGG	2 cut(s)	179, 701
Bme18I	GGWCC	2 cut(s)	195, 520
BmeRI	GACNNNNNGTC	1 cut(s)	346
BmgBI	CACGTC	1 cut(s)	517
BmgT120I	GGNCC	2 cut(s)	195, 520
BmiI	GGNNCC	1 cut(s)	223
BmrFI	CCNGG	2 cut(s)	179, 701
BmsI	GCATC	2 cut(s)	107, 270
BoxI	GACNNNNGTC	1 cut(s)	299
BpiI	GAAGAC	2 cut(s)	435, 663
BplI	GAGNNNNNCTC	2 cut(s)	197, 229
BpmI	CTGGAG	1 cut(s)	224
BpuMI	CCSGG	1 cut(s)	179
BsaBI	GATNNNNATC	1 cut(s)	495
BsaHI	GRCGYC	1 cut(s)	389
BsaI	GGTCTC	1 cut(s)	217
BsaJI	CCNNGG	1 cut(s)	183
BsaXI	ACNNNNNCTCC	2 cut(s)	337, 367
Bsc4I	CCNNNNNNNGG	2 cut(s)	184, 770
Bse8I	GATNNNNATC	1 cut(s)	495
BseBI	CCWGG	1 cut(s)	701
BseDI	CCNNGG	1 cut(s)	183
BseJI	GATNNNNATC	1 cut(s)	495
BseLI	CCNNNNNNNGG	2 cut(s)	184, 770
BseMII	CTCAG	2 cut(s)	333, 779
BseRI	GAGGAG	3 cut(s)	32, 45, 753
BseSI	GKGCMC	1 cut(s)	224
BseX3I	CGGCCG	1 cut(s)	180
BseXI	GCAGC	1 cut(s)	423
BseYI	CCCAGC	1 cut(s)	736
Bsh1285I	CGRYCG	1 cut(s)	183
BshFI	GGCC	2 cut(s)	182, 253
BshNI	GGYRCC	1 cut(s)	221
BsiEI	CGRYCG	1 cut(s)	183
BsiSI	CCGG	1 cut(s)	179
BslFI	GGGAC	1 cut(s)	307
BslI	CCNNNNNNNGG	2 cut(s)	184, 770
BsmAI	GTCTC	4 cut(s)	217, 359, 603, 758
BsmBI	CGTCTC	1 cut(s)	758
BsmFI	GGGAC	1 cut(s)	307
BsmI	GAATGC	1 cut(s)	789
BsnI	GGCC	2 cut(s)	182, 253
Bso31I	GGTCTC	1 cut(s)	217
Bsp1286I	GDGCHC	1 cut(s)	224
Bsp143I	GATC	3 cut(s)	496, 598, 730
BspACI	CCGC	2 cut(s)	129, 392
BspANI	GGCC	2 cut(s)	182, 253
BspCNI	CTCAG	2 cut(s)	332, 778
BspLI	GGNNCC	1 cut(s)	223
BspPI	GGATC	1 cut(s)	593
BspT107I	GGYRCC	1 cut(s)	221
BspTNI	GGTCTC	1 cut(s)	217
BssECI	CCNNGG	1 cut(s)	183
BssMI	GATC	3 cut(s)	496, 598, 730
BssNI	GRCGYC	1 cut(s)	389
Bst2UI	CCWGG	1 cut(s)	701
Bst4CI	ACNGT	1 cut(s)	668
Bst6I	CTCTTC	2 cut(s)	609, 619
BstACI	GRCGYC	1 cut(s)	389
BstDEI	CTNAG	2 cut(s)	319, 765
BstHHI	GCGC	1 cut(s)	853
BstKTI	GATC	3 cut(s)	499, 601, 733
BstMAI	GTCTC	4 cut(s)	217, 359, 603, 758
BstMBI	GATC	3 cut(s)	496, 598, 730
BstMCI	CGRYCG	1 cut(s)	183
BstMWI	GCNNNNNNNGC	3 cut(s)	315, 748, 857
BstNI	CCWGG	1 cut(s)	701
BstPAI	GACNNNNGTC	1 cut(s)	299
BstSCI	CCNGG	2 cut(s)	177, 699
BstSLI	GKGCMC	1 cut(s)	224
BstV1I	GCAGC	1 cut(s)	423
BstV2I	GAAGAC	2 cut(s)	435, 663
BstX2I	RGATCY	1 cut(s)	496
BstYI	RGATCY	1 cut(s)	496
BstZI	CGGCCG	1 cut(s)	180
BsuRI	GGCC	2 cut(s)	182, 253
BtrI	CACGTC	1 cut(s)	517
BtsI	GCAGTG	1 cut(s)	401
BtsIMutI	CAGTG	1 cut(s)	401
CfoI	GCGC	1 cut(s)	853
Cfr13I	GGNCC	2 cut(s)	195, 520
CseI	GACGC	2 cut(s)	397, 740
Csp6I	GTAC	2 cut(s)	399, 558
CviAII	CATG	4 cut(s)	359, 561, 861, 884
CviJI	RGCY	8 cut(s)	172, 182, 253, 318, 331, 424, 736, 742
CviKI_1	RGCY	8 cut(s)	172, 182, 253, 318, 331, 424, 736, 742
CviQI	GTAC	2 cut(s)	399, 558
DdeI	CTNAG	2 cut(s)	319, 765
DpnI	GATC	3 cut(s)	498, 600, 732
DpnII	GATC	3 cut(s)	496, 598, 730
DriI	GACNNNNNGTC	1 cut(s)	346
EaeI	YGGCCR	1 cut(s)	180
EagI	CGGCCG	1 cut(s)	180
Eam1104I	CTCTTC	2 cut(s)	609, 619
Eam1105I	GACNNNNNGTC	1 cut(s)	346
EarI	CTCTTC	2 cut(s)	609, 619
EciI	GGCGGA	1 cut(s)	118
EclXI	CGGCCG	1 cut(s)	180
Eco31I	GGTCTC	1 cut(s)	217
Eco47I	GGWCC	2 cut(s)	195, 520
Eco52I	CGGCCG	1 cut(s)	180
Eco57I	CTGAAG	4 cut(s)	515, 558, 600, 729
EcoRII	CCWGG	1 cut(s)	699
Esp3I	CGTCTC	1 cut(s)	758
FaeI	CATG	4 cut(s)	362, 564, 864, 887
FaqI	GGGAC	1 cut(s)	307
FatI	CATG	4 cut(s)	358, 560, 860, 883
Fnu4HI	GCNGC	2 cut(s)	392, 412
Fsp4HI	GCNGC	2 cut(s)	392, 412
FspBI	CTAG	1 cut(s)	351
GlaI	GCGC	1 cut(s)	852
GluI	GCNGC	2 cut(s)	392, 412
GsaI	CCCAGC	1 cut(s)	740
GsuI	CTGGAG	1 cut(s)	224
HaeIII	GGCC	2 cut(s)	182, 253
HapII	CCGG	1 cut(s)	179
HgaI	GACGC	2 cut(s)	397, 740
HhaI	GCGC	1 cut(s)	853
Hin1I	GRCGYC	1 cut(s)	389
Hin1II	CATG	4 cut(s)	362, 564, 864, 887
Hin6I	GCGC	1 cut(s)	851
HinP1I	GCGC	1 cut(s)	851
HincII	GTYRAC	2 cut(s)	283, 514
HindII	GTYRAC	2 cut(s)	283, 514
HinfI	GANTC	2 cut(s)	295, 611
HpaII	CCGG	1 cut(s)	179
HphI	GGTGA	1 cut(s)	916
Hpy166II	GTNNAC	4 cut(s)	283, 399, 514, 520
Hpy188I	TCNGA	7 cut(s)	139, 322, 534, 577, 619, 709, 768
Hpy188III	TCNNGA	2 cut(s)	203, 608
Hpy8I	GTNNAC	4 cut(s)	283, 399, 514, 520
HpyAV	CCTTC	3 cut(s)	184, 805, 895
HpyCH4III	ACNGT	1 cut(s)	668
HpyCH4IV	ACGT	1 cut(s)	516
HpyCH4V	TGCA	2 cut(s)	675, 827
HpyF10VI	GCNNNNNNNGC	3 cut(s)	315, 748, 857
HpyF3I	CTNAG	2 cut(s)	319, 765
HpySE526I	ACGT	1 cut(s)	516
Hsp92I	GRCGYC	1 cut(s)	389
Hsp92II	CATG	4 cut(s)	362, 564, 864, 887
HspAI	GCGC	1 cut(s)	851
Kzo9I	GATC	3 cut(s)	496, 598, 730
LmnI	GCTCC	2 cut(s)	125, 370
Lsp1109I	GCAGC	1 cut(s)	423
LweI	GCATC	2 cut(s)	107, 270
MaeI	CTAG	1 cut(s)	351
MaeII	ACGT	1 cut(s)	516
MaeIII	GTNAC	2 cut(s)	565, 808
MalI	GATC	3 cut(s)	498, 600, 732
MboI	GATC	3 cut(s)	496, 598, 730
MfeI	CAATTG	1 cut(s)	841
MflI	RGATCY	1 cut(s)	496
MhlI	GDGCHC	1 cut(s)	224
MluCI	AATT	3 cut(s)	841, 854, 877
MlyI	GAGTC	2 cut(s)	289, 605
MmeI	TCCRAC	2 cut(s)	162, 348
MroXI	GAANNNNTTC	1 cut(s)	498
MseI	TTAA	3 cut(s)	236, 663, 915
MspI	CCGG	1 cut(s)	179
MspR9I	CCNGG	2 cut(s)	179, 701
MunI	CAATTG	1 cut(s)	841
Mva1269I	GAATGC	1 cut(s)	789
MvaI	CCWGG	1 cut(s)	701
MwoI	GCNNNNNNNGC	3 cut(s)	315, 748, 857
NciI	CCSGG	1 cut(s)	179
NdeII	GATC	3 cut(s)	496, 598, 730
NlaIII	CATG	4 cut(s)	362, 564, 864, 887
NlaIV	GGNNCC	1 cut(s)	223
NmeAIII	GCCGAG	1 cut(s)	208
NmuCI	GTSAC	1 cut(s)	565
PctI	GAATGC	1 cut(s)	789
PdmI	GAANNNNTTC	1 cut(s)	498
PkrI	GCNGC	2 cut(s)	393, 413
PleI	GAGTC	2 cut(s)	289, 605
PpsI	GAGTC	2 cut(s)	289, 605
PshAI	GACNNNNGTC	1 cut(s)	299
PsiI	TTATAA	1 cut(s)	582
Psp6I	CCWGG	1 cut(s)	699
PspFI	CCCAGC	1 cut(s)	736
PspGI	CCWGG	1 cut(s)	699
PspN4I	GGNNCC	1 cut(s)	223
PspPI	GGNCC	2 cut(s)	195, 520
PsuI	RGATCY	1 cut(s)	496
RsaI	GTAC	2 cut(s)	400, 559
RsaNI	GTAC	2 cut(s)	399, 558
SaqAI	TTAA	3 cut(s)	236, 663, 915
SatI	GCNGC	2 cut(s)	392, 412
Sau3AI	GATC	3 cut(s)	496, 598, 730
Sau96I	GGNCC	2 cut(s)	195, 520
SchI	GAGTC	2 cut(s)	289, 605
ScrFI	CCNGG	2 cut(s)	179, 701
SduI	GDGCHC	1 cut(s)	224
SfaNI	GCATC	2 cut(s)	107, 270
SinI	GGWCC	2 cut(s)	195, 520
Sse9I	AATT	3 cut(s)	841, 854, 877
SsiI	CCGC	2 cut(s)	129, 392
SspI	AATATT	1 cut(s)	652
SspMI	CTAG	1 cut(s)	351
StyD4I	CCNGG	2 cut(s)	177, 699
TaaI	ACNGT	1 cut(s)	668
TaiI	ACGT	1 cut(s)	519
TaqI	TCGA	3 cut(s)	607, 780, 870
TaqII	GACCGA	1 cut(s)	537
TasI	AATT	3 cut(s)	841, 854, 877
TauI	GCSGC	1 cut(s)	394
Tru1I	TTAA	3 cut(s)	236, 663, 915
Tru9I	TTAA	3 cut(s)	236, 663, 915
TscAI	CASTG	1 cut(s)	401
TseFI	GTSAC	1 cut(s)	565
TseI	GCWGC	1 cut(s)	411
Tsp45I	GTSAC	1 cut(s)	565
TspDTI	ATGAA	3 cut(s)	443, 507, 831
TspGWI	ACGGA	1 cut(s)	208
TspRI	CASTG	1 cut(s)	401
VpaK11BI	GGWCC	2 cut(s)	195, 520
XapI	RAATTY	1 cut(s)	877
XcmI	CCANNNNNNNNNTGG	1 cut(s)	205
XmnI	GAANNNNTTC	1 cut(s)	498
XspI	CTAG	1 cut(s)	351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.