Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0012441

Physical Location & Seq

Genomic Coordinates Forward (+)

53810096 .. 53811269

Gene Structure 1174 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0419200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGTTTATCACCCCCACTCTTAGCATCTCTTGCATAACTTGTATGCAGCAGGGGGAGGAAGGTAGCAATAAGGATCATGAATCGCATGGGAAGATAAAGCTCAACGGCTTTGTGCCGGAGAAACCTTATGGAGGAACCGGTGGAGGTCTTTGGGATGATGGTATGTACCATGGCGTAAGAGAAATCACCGTCACTTCTGGTTTATGCATCGACTCAATTCGTGTGGCGTATGATAAAGATGGTGAGCTTGTCAATGCTCATAAGCATGGAGGTGACGGAGGCGGCGCCAATGCTCAGATCAAGCTAGAGTATCCAGATGAGTTCCTAGTGAGTGTTAGTGGACACTGTTTTGGGGCGCCCTGGATAGTTGGCGATCCGGTGGTGATACGGTCACTCAAATTCGAGAGCAATAGAAGAACATTTGGACCATTTGGAGTTGAAGTAGGCACACCTTTTACTTTCACAGTTGAAGATGGAGGCCAAATTGTTGGCATGAAGGGAAGAAGTGGTTGGTACATAGATGCAATTGGGTTTCACATATCCCATGCCCCCAAAAGAAAACTCTTTCGGAGAGTTAAGGAGGGTCTTAAAAAGCTTTCGCCTTCAAAAGCTTATGACATCTTGATTAAAATCACCAAACCTCTTCAAATTTTTCAATGTACAGGTATAAGCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009767 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0015979 GO:0018130 GO:0019222 GO:0019438 GO:0019684 GO:0022900 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0033013 GO:0033014 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043495 GO:0044237 GO:0044249 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051193 GO:0051194 GO:0055114 GO:0065007 GO:0070453 GO:0070455 GO:0071704 GO:1901360 GO:1901362 GO:1901401 GO:1901403 GO:1901463 GO:1901465 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2470

Protein Analysis

225

Amino Acids

24.53

Weight (kDa)

8.23

Isoelectric Point (pI)

41.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Jacalin	PF01419	41 - 179	7.1e-41	Jacalin-like lectin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012441)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21200
fragaria_vesca	FvH4_6g37280
malus_domestica	MD09G1158800.v1.1
prunus_persica	Prupe.3G167000_v2.0.a1 Prupe.3G167000_v2.0.a1 Prupe.3G167000_v2.0.a1 Prupe.3G167000_v2.0.a1
pyrus_communis	pycom09g07740
rosa_chinensis	RchiOBHm_Chr2g0150111
rosa_laevigata	RLG00000020467
rosa_multiflora	Rmu_sc0005609.1_g000007 Rmu_sc0009445.1_g000004
rosa_roxburghii	Rroxscaffold_2G00097440
rosa_rugosa	Rorug02G0419200
rosa_samantha	Rh2AG477800 Rh2BG490400 Rh2CG464000 Rh2DG499200
rosa_wichuraiana	Rw2G039000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	284, 355
AciI	CCGC	1 cut(s)	282
AclWI	GGATC	2 cut(s)	81, 368
AcsI	RAATTY	2 cut(s)	398, 648
AcyI	GRCGYC	2 cut(s)	285, 356
AfaI	GTAC	3 cut(s)	167, 515, 661
AfiI	CCNNNNNNNGG	1 cut(s)	131
AgeI	ACCGGT	1 cut(s)	137
AgsI	TTSAA	5 cut(s)	440, 470, 606, 647, 656
AjnI	CCWGG	1 cut(s)	359
AjuI	GAANNNNNNNTTGG	2 cut(s)	493, 525
AluBI	AGCT	5 cut(s)	100, 247, 304, 595, 611
AluI	AGCT	5 cut(s)	100, 247, 304, 595, 611
AlwI	GGATC	2 cut(s)	81, 368
AoxI	GGCC	1 cut(s)	478
ApeKI	GCWGC	1 cut(s)	46
ApoI	RAATTY	2 cut(s)	398, 648
AsiGI	ACCGGT	1 cut(s)	137
AspLEI	GCGC	2 cut(s)	287, 358
AspS9I	GGNCC	1 cut(s)	425
AsuHPI	GGTGA	5 cut(s)	178, 254, 284, 394, 625
AvaII	GGWCC	1 cut(s)	425
BanI	GGYRCC	2 cut(s)	284, 355
BbvI	GCAGC	1 cut(s)	58
BccI	CCATC	3 cut(s)	152, 233, 467
BceAI	ACGGC	1 cut(s)	121
BciT130I	CCWGG	1 cut(s)	361
BciVI	GTATCC	1 cut(s)	321
BfaI	CTAG	2 cut(s)	305, 326
BfoI	RGCGCY	2 cut(s)	288, 359
BfuI	GTATCC	1 cut(s)	321
BisI	GCNGC	2 cut(s)	47, 283
BlsI	GCNGC	2 cut(s)	48, 284
Bme1390I	CCNGG	1 cut(s)	361
Bme18I	GGWCC	1 cut(s)	425
BmgT120I	GGNCC	1 cut(s)	425
BmiI	GGNNCC	3 cut(s)	136, 286, 357
BmrFI	CCNGG	1 cut(s)	361
BmsI	GCATC	3 cut(s)	33, 216, 511
BsaBI	GATNNNNATC	1 cut(s)	629
BsaHI	GRCGYC	2 cut(s)	285, 356
BsaJI	CCNNGG	2 cut(s)	169, 359
BsaWI	WCCGGW	2 cut(s)	137, 376
BsaXI	ACNNNNNCTCC	2 cut(s)	426, 456
Bsc4I	CCNNNNNNNGG	1 cut(s)	131
Bse118I	RCCGGY	1 cut(s)	137
Bse8I	GATNNNNATC	1 cut(s)	629
BseBI	CCWGG	1 cut(s)	361
BseDI	CCNNGG	2 cut(s)	169, 359
BseGI	GGATG	1 cut(s)	160
BseJI	GATNNNNATC	1 cut(s)	629
BseLI	CCNNNNNNNGG	1 cut(s)	131
BseMII	CTCAG	1 cut(s)	308
BseXI	GCAGC	1 cut(s)	58
BshFI	GGCC	1 cut(s)	480
BshNI	GGYRCC	2 cut(s)	284, 355
BshTI	ACCGGT	1 cut(s)	137
BsiSI	CCGG	3 cut(s)	116, 138, 377
BslI	CCNNNNNNNGG	1 cut(s)	131
BsnI	GGCC	1 cut(s)	480
Bsp1407I	TGTACA	1 cut(s)	659
Bsp143I	GATC	3 cut(s)	73, 297, 373
Bsp19I	CCATGG	1 cut(s)	169
BspACI	CCGC	1 cut(s)	282
BspANI	GGCC	1 cut(s)	480
BspCNI	CTCAG	1 cut(s)	307
BspHI	TCATGA	1 cut(s)	76
BspLI	GGNNCC	3 cut(s)	136, 286, 357
BspPI	GGATC	2 cut(s)	81, 368
BspT107I	GGYRCC	2 cut(s)	284, 355
BsrFI	RCCGGY	1 cut(s)	137
BsrGI	TGTACA	1 cut(s)	659
BssAI	RCCGGY	1 cut(s)	137
BssECI	CCNNGG	2 cut(s)	169, 359
BssMI	GATC	3 cut(s)	73, 297, 373
BssNI	GRCGYC	2 cut(s)	285, 356
BssT1I	CCWWGG	1 cut(s)	169
Bst2UI	CCWGG	1 cut(s)	361
Bst4CI	ACNGT	4 cut(s)	190, 347, 390, 466
Bst6I	CTCTTC	1 cut(s)	648
BstACI	GRCGYC	2 cut(s)	285, 356
BstAPI	GCANNNNNTGC	1 cut(s)	30
BstAUI	TGTACA	1 cut(s)	659
BstDEI	CTNAG	2 cut(s)	20, 294
BstDSI	CCRYGG	1 cut(s)	169
BstENI	CCTNNNNNAGG	1 cut(s)	129
BstF5I	GGATG	1 cut(s)	160
BstH2I	RGCGCY	2 cut(s)	288, 359
BstHHI	GCGC	2 cut(s)	287, 358
BstKTI	GATC	3 cut(s)	76, 300, 376
BstMBI	GATC	3 cut(s)	73, 297, 373
BstMWI	GCNNNNNNNGC	1 cut(s)	30
BstNI	CCWGG	1 cut(s)	361
BstNSI	RCATGY	1 cut(s)	676
BstSCI	CCNGG	1 cut(s)	359
BstV1I	GCAGC	1 cut(s)	58
BstXI	CCANNNNNNTGG	1 cut(s)	488
BsuI	GTATCC	1 cut(s)	321
BsuRI	GGCC	1 cut(s)	480
BtgI	CCRYGG	1 cut(s)	169
BtsCI	GGATG	1 cut(s)	160
BtsIMutI	CAGTG	1 cut(s)	343
CciI	TCATGA	1 cut(s)	76
CfoI	GCGC	2 cut(s)	287, 358
Cfr10I	RCCGGY	1 cut(s)	137
Cfr13I	GGNCC	1 cut(s)	425
Csp6I	GTAC	3 cut(s)	166, 514, 660
CspAI	ACCGGT	1 cut(s)	137
CspCI	CAANNNNNGTGG	2 cut(s)	204, 239
CviAII	CATG	7 cut(s)	77, 86, 170, 266, 493, 545, 673
CviJI	RGCY	7 cut(s)	100, 108, 247, 304, 480, 595, 611
CviKI_1	RGCY	7 cut(s)	100, 108, 247, 304, 480, 595, 611
CviQI	GTAC	3 cut(s)	166, 514, 660
DdeI	CTNAG	2 cut(s)	20, 294
DinI	GGCGCC	2 cut(s)	286, 357
DpnI	GATC	3 cut(s)	75, 299, 375
DpnII	GATC	3 cut(s)	73, 297, 373
Eam1104I	CTCTTC	1 cut(s)	648
EarI	CTCTTC	1 cut(s)	648
Eco130I	CCWWGG	1 cut(s)	169
Eco47I	GGWCC	1 cut(s)	425
EcoNI	CCTNNNNNAGG	1 cut(s)	129
EcoRII	CCWGG	1 cut(s)	359
EcoT14I	CCWWGG	1 cut(s)	169
EcoT22I	ATGCAT	1 cut(s)	209
EgeI	GGCGCC	2 cut(s)	286, 357
EheI	GGCGCC	2 cut(s)	286, 357
ErhI	CCWWGG	1 cut(s)	169
FaeI	CATG	7 cut(s)	80, 89, 173, 269, 496, 548, 676
FatI	CATG	7 cut(s)	76, 85, 169, 265, 492, 544, 672
Fnu4HI	GCNGC	2 cut(s)	47, 283
FokI	GGATG	1 cut(s)	167
Fsp4HI	GCNGC	2 cut(s)	47, 283
FspBI	CTAG	2 cut(s)	305, 326
GlaI	GCGC	2 cut(s)	286, 357
GluI	GCNGC	2 cut(s)	47, 283
HaeII	RGCGCY	2 cut(s)	288, 359
HaeIII	GGCC	1 cut(s)	480
HapII	CCGG	3 cut(s)	116, 138, 377
HhaI	GCGC	2 cut(s)	287, 358
Hin1I	GRCGYC	2 cut(s)	285, 356
Hin1II	CATG	7 cut(s)	80, 89, 173, 269, 496, 548, 676
Hin6I	GCGC	2 cut(s)	285, 356
HinP1I	GCGC	2 cut(s)	285, 356
HindIII	AAGCTT	2 cut(s)	593, 609
HinfI	GANTC	2 cut(s)	80, 212
HpaII	CCGG	3 cut(s)	116, 138, 377
HphI	GGTGA	5 cut(s)	178, 254, 284, 394, 625
Hpy166II	GTNNAC	1 cut(s)	341
Hpy188I	TCNGA	2 cut(s)	297, 570
Hpy188III	TCNNGA	4 cut(s)	77, 314, 403, 622
Hpy8I	GTNNAC	1 cut(s)	341
HpyAV	CCTTC	3 cut(s)	53, 490, 612
HpyCH4III	ACNGT	4 cut(s)	190, 347, 390, 466
HpyCH4V	TGCA	4 cut(s)	33, 46, 207, 524
HpyF10VI	GCNNNNNNNGC	1 cut(s)	30
HpyF3I	CTNAG	2 cut(s)	20, 294
Hsp92I	GRCGYC	2 cut(s)	285, 356
Hsp92II	CATG	7 cut(s)	80, 89, 173, 269, 496, 548, 676
HspAI	GCGC	2 cut(s)	285, 356
KasI	GGCGCC	2 cut(s)	284, 355
Kzo9I	GATC	3 cut(s)	73, 297, 373
LpnPI	CCDG	9 cut(s)	35, 129, 151, 183, 327, 346, 373, 390, 648
Lsp1109I	GCAGC	1 cut(s)	58
LweI	GCATC	3 cut(s)	33, 216, 511
MaeI	CTAG	2 cut(s)	305, 326
MaeIII	GTNAC	3 cut(s)	190, 272, 390
MalI	GATC	3 cut(s)	75, 299, 375
MboI	GATC	3 cut(s)	73, 297, 373
MboII	GAAGA	5 cut(s)	103, 426, 482, 513, 635
MfeI	CAATTG	1 cut(s)	525
MluCI	AATT	5 cut(s)	216, 398, 483, 525, 648
Mly113I	GGCGCC	2 cut(s)	285, 356
MlyI	GAGTC	1 cut(s)	206
MnlI	CCTC	8 cut(s)	49, 125, 137, 263, 272, 470, 574, 651
Mph1103I	ATGCAT	1 cut(s)	209
MseI	TTAA	3 cut(s)	576, 588, 627
MslI	CAYNNNNRTG	2 cut(s)	264, 270
MspI	CCGG	3 cut(s)	116, 138, 377
MspR9I	CCNGG	1 cut(s)	361
MunI	CAATTG	1 cut(s)	525
MvaI	CCWGG	1 cut(s)	361
MwoI	GCNNNNNNNGC	1 cut(s)	30
NarI	GGCGCC	2 cut(s)	285, 356
NcoI	CCATGG	1 cut(s)	169
NdeII	GATC	3 cut(s)	73, 297, 373
NlaIII	CATG	7 cut(s)	80, 89, 173, 269, 496, 548, 676
NlaIV	GGNNCC	3 cut(s)	136, 286, 357
NmuCI	GTSAC	3 cut(s)	190, 272, 390
NsiI	ATGCAT	1 cut(s)	209
NspI	RCATGY	1 cut(s)	676
PagI	TCATGA	1 cut(s)	76
PfeI	GAWTC	1 cut(s)	80
PinAI	ACCGGT	1 cut(s)	137
PkrI	GCNGC	2 cut(s)	48, 284
PleI	GAGTC	1 cut(s)	206
PluTI	GGCGCC	2 cut(s)	288, 359
PpsI	GAGTC	1 cut(s)	206
Psp6I	CCWGG	1 cut(s)	359
PspGI	CCWGG	1 cut(s)	359
PspN4I	GGNNCC	3 cut(s)	136, 286, 357
PspPI	GGNCC	1 cut(s)	425
RsaI	GTAC	3 cut(s)	167, 515, 661
RsaNI	GTAC	3 cut(s)	166, 514, 660
RseI	CAYNNNNRTG	2 cut(s)	264, 270
SaqAI	TTAA	3 cut(s)	576, 588, 627
SatI	GCNGC	2 cut(s)	47, 283
Sau3AI	GATC	3 cut(s)	73, 297, 373
Sau96I	GGNCC	1 cut(s)	425
SchI	GAGTC	1 cut(s)	206
ScrFI	CCNGG	1 cut(s)	361
SfaNI	GCATC	3 cut(s)	33, 216, 511
SfoI	GGCGCC	2 cut(s)	286, 357
SinI	GGWCC	1 cut(s)	425
SmiMI	CAYNNNNRTG	2 cut(s)	264, 270
Sse9I	AATT	5 cut(s)	216, 398, 483, 525, 648
SsiI	CCGC	1 cut(s)	282
SspDI	GGCGCC	2 cut(s)	284, 355
SspMI	CTAG	2 cut(s)	305, 326
StyD4I	CCNGG	1 cut(s)	359
StyI	CCWWGG	1 cut(s)	169
TaaI	ACNGT	4 cut(s)	190, 347, 390, 466
TaqI	TCGA	2 cut(s)	210, 402
TasI	AATT	5 cut(s)	216, 398, 483, 525, 648
TatI	WGTACW	1 cut(s)	659
TauI	GCSGC	1 cut(s)	285
TfiI	GAWTC	1 cut(s)	80
Tru1I	TTAA	3 cut(s)	576, 588, 627
Tru9I	TTAA	3 cut(s)	576, 588, 627
TscAI	CASTG	1 cut(s)	350
TseFI	GTSAC	3 cut(s)	190, 272, 390
TseI	GCWGC	1 cut(s)	46
Tsp45I	GTSAC	3 cut(s)	190, 272, 390
TspDTI	ATGAA	2 cut(s)	93, 509
TspGWI	ACGGA	1 cut(s)	291
TspRI	CASTG	1 cut(s)	350
VpaK11BI	GGWCC	1 cut(s)	425
XagI	CCTNNNNNAGG	1 cut(s)	129
XapI	RAATTY	2 cut(s)	398, 648
XceI	RCATGY	1 cut(s)	676
XspI	CTAG	2 cut(s)	305, 326
Zsp2I	ATGCAT	1 cut(s)	209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.