Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0012441

Physical Location & Seq

Genomic Coordinates Reverse (-)

18570064 .. 18573455

Gene Structure 3392 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G167000.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGCTTCTCCAAACTCAATCTCTCACAACCCATGTGGCTCTTCCATTCACTCCTTCAAAACCAATTCCCAAAACCCAATTCTTCACTCCTTCAAAGCAAAATCCGTTTCTCAAAACTCAGTGGAGAACACTAAAATGCTCGCTTTCGACTGTTTCAGAGCCGACCCACTTGGAGAAGAAGACCCATAAGCCGTTTCCGGCTGAGGTTTCAAGGACTATTATGGAGTTGGTGTCTGTGGGCACGCTTTCTACTTTGACCCAAGAAGGTTGGCCTTTGGGTATTGGCGTTCGCTTCGCTGTTGACCCAGAAGGCACTCCAGTCTTGTGCTTGAATGCCTCTAATCGGCAGTTCTCCATTGACAGGAGGTCTAGCTTCCATGTCCAGTTAGAGCAATGTGGGCTGCGGACGCCTCAATGCACGATATTAGGTAGCATTGACAAACCAGAAGACAGGAAGATGTTGAAGTACCTTCATTCAGTATGGACAAAGAGGTTTGGAGAAGAAGTCAACGAAGACCTTATATATGTTGTTTCTGTGGAACGGGTACTTCAGTTGGAGGACTTTAAAGAGGGTGGTGTATGGATTACATCTTCAGATTATAAAAATGCACAACCTGATCCTCTTCGGGACTTTGCGGAAAAGCTAGTGAATGAGATAAACACCAACAACATTGAAGATATTAACCGTTTCTGCAACATCTATGCTGATTTGAACTTCCAGGTTTCTGAAGCAAAATTGATTTGGATTGATCGGTTAGGCTTTGACTTGCGTCTTTGGTCTCCTCAGGAAGGTATATTCGAGGTTCGCATTCCCTTTCCCAGGGATGTGATTGACGAGAAGGGTGCAAAATCAACGTTTAATTGTATGTCTCAATTAGCTTGGGAGGTGGAAAAGAATTTCTATGCCCCAGATTTTGACAGAGTGAAACAAGTTAAGCAGATAGCATACAAGGGACAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009767 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0015979 GO:0018130 GO:0019222 GO:0019438 GO:0019684 GO:0022900 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0033013 GO:0033014 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043495 GO:0044237 GO:0044249 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051193 GO:0051194 GO:0055114 GO:0065007 GO:0070453 GO:0070455 GO:0071704 GO:1901360 GO:1901362 GO:1901401 GO:1901403 GO:1901463 GO:1901465 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2470

Protein Analysis

320

Amino Acids

36.68

Weight (kDa)

6.55

Isoelectric Point (pI)

46.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012441)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21200
fragaria_vesca	FvH4_6g37280
malus_domestica	MD09G1158800.v1.1
prunus_persica	Prupe.3G167000_v2.0.a1 Prupe.3G167000_v2.0.a1 Prupe.3G167000_v2.0.a1 Prupe.3G167000_v2.0.a1
pyrus_communis	pycom09g07740
rosa_chinensis	RchiOBHm_Chr2g0150111
rosa_laevigata	RLG00000020467
rosa_multiflora	Rmu_sc0005609.1_g000007 Rmu_sc0009445.1_g000004
rosa_roxburghii	Rroxscaffold_2G00097440
rosa_rugosa	Rorug02G0419200
rosa_samantha	Rh2AG477800 Rh2BG490400 Rh2CG464000 Rh2DG499200
rosa_wichuraiana	Rw2G039000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	600
AciI	CCGC	2 cut(s)	403, 635
AclI	AACGTT	1 cut(s)	854
AclWI	GGATC	1 cut(s)	611
AcsI	RAATTY	1 cut(s)	895
AcuI	CTGAAG	3 cut(s)	533, 576, 747
AcyI	GRCGYC	1 cut(s)	407
AfaI	GTAC	2 cut(s)	467, 546
AfiI	CCNNNNNNNGG	4 cut(s)	342, 360, 788, 819
AgsI	TTSAA	7 cut(s)	57, 93, 210, 331, 463, 674, 712
AhdI	GACNNNNNGTC	1 cut(s)	364
AjnI	CCWGG	2 cut(s)	717, 818
AjuI	GAANNNNNNNTTGG	2 cut(s)	62, 94
AluBI	AGCT	3 cut(s)	372, 643, 878
AluI	AGCT	3 cut(s)	372, 643, 878
Alw26I	GTCTC	2 cut(s)	783, 873
AlwI	GGATC	1 cut(s)	611
AoxI	GGCC	1 cut(s)	269
ApeKI	GCWGC	1 cut(s)	400
ApoI	RAATTY	1 cut(s)	895
AxyI	CCTNAGG	1 cut(s)	783
BaeGI	GKGCMC	1 cut(s)	242
BaeI	ACNNNNGTAYC	2 cut(s)	536, 569
BbsI	GAAGAC	3 cut(s)	185, 453, 519
BbvCI	CCTCAGC	1 cut(s)	201
BbvI	GCAGC	1 cut(s)	387
BceAI	ACGGC	1 cut(s)	175
BcgI	CGANNNNNNTGC	2 cut(s)	824, 858
BciT130I	CCWGG	2 cut(s)	719, 820
BcoDI	GTCTC	2 cut(s)	783, 873
BfaI	CTAG	2 cut(s)	369, 644
BisI	GCNGC	1 cut(s)	401
BlsI	GCNGC	1 cut(s)	402
Bme1390I	CCNGG	2 cut(s)	719, 820
BmeRI	GACNNNNNGTC	1 cut(s)	364
BmrFI	CCNGG	2 cut(s)	719, 820
BoxI	GACNNNNGTC	1 cut(s)	768
BpiI	GAAGAC	3 cut(s)	185, 453, 519
BpmI	CTGGAG	1 cut(s)	300
Bpu10I	CCTNAGC	1 cut(s)	201
BsaHI	GRCGYC	1 cut(s)	407
BsaI	GGTCTC	1 cut(s)	783
BsaJI	CCNNGG	2 cut(s)	818, 819
BsaXI	ACNNNNNCTCC	4 cut(s)	215, 245, 489, 519
Bsc4I	CCNNNNNNNGG	4 cut(s)	342, 360, 788, 819
Bse1I	ACTGG	2 cut(s)	317, 382
Bse21I	CCTNAGG	1 cut(s)	783
Bse3DI	GCAATG	1 cut(s)	398
BseBI	CCWGG	2 cut(s)	719, 820
BseDI	CCNNGG	2 cut(s)	818, 819
BseGI	GGATG	1 cut(s)	829
BseLI	CCNNNNNNNGG	4 cut(s)	342, 360, 788, 819
BseMI	GCAATG	1 cut(s)	398
BseMII	CTCAG	3 cut(s)	131, 192, 797
BseNI	ACTGG	2 cut(s)	317, 382
BseRI	GAGGAG	1 cut(s)	771
BseSI	GKGCMC	1 cut(s)	242
BseXI	GCAGC	1 cut(s)	387
BshFI	GGCC	1 cut(s)	271
BsiSI	CCGG	1 cut(s)	197
BslFI	GGGAC	1 cut(s)	641
BslI	CCNNNNNNNGG	4 cut(s)	342, 360, 788, 819
BsmAI	GTCTC	2 cut(s)	783, 873
BsmFI	GGGAC	1 cut(s)	641
BsmI	GAATGC	2 cut(s)	337, 807
BsnI	GGCC	1 cut(s)	271
Bso31I	GGTCTC	1 cut(s)	783
Bsp1286I	GDGCHC	1 cut(s)	242
Bsp143I	GATC	2 cut(s)	616, 748
BspACI	CCGC	2 cut(s)	403, 635
BspANI	GGCC	1 cut(s)	271
BspCNI	CTCAG	3 cut(s)	130, 193, 796
BspPI	GGATC	1 cut(s)	611
BspQI	GCTCTTC	1 cut(s)	45
BspTNI	GGTCTC	1 cut(s)	783
BsrDI	GCAATG	1 cut(s)	398
BsrI	ACTGG	2 cut(s)	317, 382
BssECI	CCNNGG	2 cut(s)	818, 819
BssMI	GATC	2 cut(s)	616, 748
BssNI	GRCGYC	1 cut(s)	407
Bst2UI	CCWGG	2 cut(s)	719, 820
Bst4CI	ACNGT	3 cut(s)	151, 686, 957
Bst6I	CTCTTC	2 cut(s)	45, 627
BstACI	GRCGYC	1 cut(s)	407
BstC8I	GCNNGC	2 cut(s)	140, 242
BstDEI	CTNAG	3 cut(s)	117, 201, 783
BstENI	CCTNNNNNAGG	2 cut(s)	786, 817
BstF5I	GGATG	1 cut(s)	829
BstKTI	GATC	2 cut(s)	619, 751
BstMAI	GTCTC	2 cut(s)	783, 873
BstMBI	GATC	2 cut(s)	616, 748
BstMWI	GCNNNNNNNGC	2 cut(s)	397, 406
BstNI	CCWGG	2 cut(s)	719, 820
BstPAI	GACNNNNGTC	1 cut(s)	768
BstSCI	CCNGG	2 cut(s)	717, 818
BstSLI	GKGCMC	1 cut(s)	242
BstV1I	GCAGC	1 cut(s)	387
BstV2I	GAAGAC	3 cut(s)	185, 453, 519
Bsu36I	CCTNAGG	1 cut(s)	783
BsuRI	GGCC	1 cut(s)	271
BtsCI	GGATG	1 cut(s)	829
BtsIMutI	CAGTG	1 cut(s)	125
Cac8I	GCNNGC	2 cut(s)	140, 242
CseI	GACGC	2 cut(s)	415, 758
Csp6I	GTAC	2 cut(s)	466, 545
CspCI	CAANNNNNGTGG	2 cut(s)	15, 50
CviAII	CATG	2 cut(s)	32, 377
CviQI	GTAC	2 cut(s)	466, 545
DdeI	CTNAG	3 cut(s)	117, 201, 783
DpnI	GATC	2 cut(s)	618, 750
DpnII	GATC	2 cut(s)	616, 748
DraI	TTTAAA	1 cut(s)	565
DriI	GACNNNNNGTC	1 cut(s)	364
Eam1104I	CTCTTC	2 cut(s)	45, 627
Eam1105I	GACNNNNNGTC	1 cut(s)	364
EarI	CTCTTC	2 cut(s)	45, 627
Eco31I	GGTCTC	1 cut(s)	783
Eco57I	CTGAAG	3 cut(s)	533, 576, 747
Eco81I	CCTNAGG	1 cut(s)	783
EcoNI	CCTNNNNNAGG	2 cut(s)	786, 817
EcoRII	CCWGG	2 cut(s)	717, 818
FaeI	CATG	2 cut(s)	35, 380
FaqI	GGGAC	1 cut(s)	641
FatI	CATG	2 cut(s)	31, 376
Fnu4HI	GCNGC	1 cut(s)	401
FokI	GGATG	1 cut(s)	836
Fsp4HI	GCNGC	1 cut(s)	401
FspBI	CTAG	2 cut(s)	369, 644
GluI	GCNGC	1 cut(s)	401
GsuI	CTGGAG	1 cut(s)	300
HaeIII	GGCC	1 cut(s)	271
HapII	CCGG	1 cut(s)	197
HgaI	GACGC	2 cut(s)	415, 758
Hin1I	GRCGYC	1 cut(s)	407
Hin1II	CATG	2 cut(s)	35, 380
HincII	GTYRAC	2 cut(s)	301, 508
HindII	GTYRAC	2 cut(s)	301, 508
HpaII	CCGG	1 cut(s)	197
Hpy166II	GTNNAC	2 cut(s)	301, 508
Hpy188I	TCNGA	3 cut(s)	157, 595, 727
Hpy188III	TCNNGA	2 cut(s)	626, 785
Hpy8I	GTNNAC	2 cut(s)	301, 508
HpyAV	CCTTC	7 cut(s)	63, 99, 257, 302, 479, 782, 832
HpyCH4III	ACNGT	3 cut(s)	151, 686, 957
HpyCH4IV	ACGT	1 cut(s)	854
HpyCH4V	TGCA	4 cut(s)	417, 608, 693, 845
HpyF10VI	GCNNNNNNNGC	2 cut(s)	397, 406
HpyF3I	CTNAG	3 cut(s)	117, 201, 783
HpySE526I	ACGT	1 cut(s)	854
Hsp92I	GRCGYC	1 cut(s)	407
Hsp92II	CATG	2 cut(s)	35, 380
Kzo9I	GATC	2 cut(s)	616, 748
LguI	GCTCTTC	1 cut(s)	45
Lsp1109I	GCAGC	1 cut(s)	387
MaeI	CTAG	2 cut(s)	369, 644
MaeII	ACGT	1 cut(s)	854
MalI	GATC	2 cut(s)	618, 750
MboI	GATC	2 cut(s)	616, 748
MhlI	GDGCHC	1 cut(s)	242
MluCI	AATT	6 cut(s)	63, 77, 734, 859, 872, 895
MmeI	TCCRAC	1 cut(s)	534
MseI	TTAA	4 cut(s)	564, 681, 858, 933
MslI	CAYNNNNRTG	1 cut(s)	133
MspI	CCGG	1 cut(s)	197
MspR9I	CCNGG	2 cut(s)	719, 820
Mva1269I	GAATGC	2 cut(s)	337, 807
MvaI	CCWGG	2 cut(s)	719, 820
MwoI	GCNNNNNNNGC	2 cut(s)	397, 406
NdeII	GATC	2 cut(s)	616, 748
NlaIII	CATG	2 cut(s)	35, 380
PasI	CCCWGGG	1 cut(s)	819
PciSI	GCTCTTC	1 cut(s)	45
PctI	GAATGC	2 cut(s)	337, 807
PkrI	GCNGC	1 cut(s)	402
PshAI	GACNNNNGTC	1 cut(s)	768
PsiI	TTATAA	1 cut(s)	600
Psp1406I	AACGTT	1 cut(s)	854
Psp6I	CCWGG	2 cut(s)	717, 818
PspGI	CCWGG	2 cut(s)	717, 818
RsaI	GTAC	2 cut(s)	467, 546
RsaNI	GTAC	2 cut(s)	466, 545
RseI	CAYNNNNRTG	1 cut(s)	133
SapI	GCTCTTC	1 cut(s)	45
SaqAI	TTAA	4 cut(s)	564, 681, 858, 933
SatI	GCNGC	1 cut(s)	401
Sau3AI	GATC	2 cut(s)	616, 748
ScrFI	CCNGG	2 cut(s)	719, 820
SduI	GDGCHC	1 cut(s)	242
SmiMI	CAYNNNNRTG	1 cut(s)	133
Sse9I	AATT	6 cut(s)	63, 77, 734, 859, 872, 895
SsiI	CCGC	2 cut(s)	403, 635
SspMI	CTAG	2 cut(s)	369, 644
StyD4I	CCNGG	2 cut(s)	717, 818
TaaI	ACNGT	3 cut(s)	151, 686, 957
TaiI	ACGT	1 cut(s)	857
TaqI	TCGA	2 cut(s)	146, 798
TasI	AATT	6 cut(s)	63, 77, 734, 859, 872, 895
Tru1I	TTAA	4 cut(s)	564, 681, 858, 933
Tru9I	TTAA	4 cut(s)	564, 681, 858, 933
TscAI	CASTG	1 cut(s)	125
TseI	GCWGC	1 cut(s)	400
TspDTI	ATGAA	1 cut(s)	461
TspGWI	ACGGA	1 cut(s)	93
TspRI	CASTG	1 cut(s)	125
XagI	CCTNNNNNAGG	2 cut(s)	786, 817
XapI	RAATTY	1 cut(s)	895
XspI	CTAG	2 cut(s)	369, 644

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.