Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0012441

Physical Location & Seq

Genomic Coordinates Forward (+)

12701342 .. 12705002

Gene Structure 3661 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1158800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGCTTCTCCAAACTCAATCTCTCACAACCCATTTGTCCCTTCCACTCCCTCCCTCAAAACCCACCCCCAAATTCCCATCTTTCACCCCCATAAAACAGAACCCATTTCGCAGAACTAGGTTCAGAGCCCTAAGATGCTCGCTTTCGGCGGTTTCGGAGCCGACCCAGTTGGAAACGAAGACTCACAAGCCGGTTCCAGCTGAGGTTTCCAGGACAATAATGGAGTTGGTGTCTGTGGGCACGCTTTCTACTCTGACTCAAGAGGGTTGGCCTTTGGGGATTGGCGTTCGGTTCGCGGTCGACCCGGAAGGGACTCCGGTGTTGTGCTTGAATGCCTCTAATCGGCAGTTTTCTATTGACAGGAGGTCTAGCTTCCATGTCCAGTTGGAGCAAAGCGGGCTGCGGACACCTCAGTGCACGATTTTAGGCAGCATTGACAAACCAGAAAATAGGGCAATGTTAAAGTACCTTCATTCAGTATGGAAAAAGAGGTTTGGAGAAGAAGTTGATGAAGATCTTATATATGTTGTTTCTGTGGAACGGGTACTTCAGTTGGAGGACTTTAAAGAGGTTGGTATGTGGGTTACATCTTCAGATTATAAAAATGCACAACCTGATCCTCTTAGGGATTTTGCGGTAAAGCTAGTGAATGAGATAAACACCAACAACATTGAAGATATTAATCGTTTTTGCAACATCTATGCTGATTTGAACTTCCAGGTTTCTGAAGCAAAACTGGTTTGGGTTGATCGGTTAGGCTTTGACCTGCGTCTTTGGTCTCCTCAGGAAGGTATATTTGAGATTCGCATTCCCTTCTCCAGGGACGTGACGGATGAGAAGGGTGCAAAGTCAATGTTTAACTGCATGTCTCAATTAGCTTGGGAGGTGGAAAAGAATTTCCATGCCCCAGATTTCGAAAGGGTGAAGCAAGTTAAGAAGATAGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009767 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0015979 GO:0018130 GO:0019222 GO:0019438 GO:0019684 GO:0022900 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0033013 GO:0033014 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043495 GO:0044237 GO:0044249 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051193 GO:0051194 GO:0055114 GO:0065007 GO:0070453 GO:0070455 GO:0071704 GO:1901360 GO:1901362 GO:1901401 GO:1901403 GO:1901463 GO:1901465 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2470

Protein Analysis

316

Amino Acids

36.07

Weight (kDa)

7.64

Isoelectric Point (pI)

46.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF2470	PF10615	215 - 285	1.2e-08	Domain of unknown function (DUF2470)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012441)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21200
fragaria_vesca	FvH4_6g37280
malus_domestica	MD09G1158800.v1.1
prunus_persica	Prupe.3G167000_v2.0.a1 Prupe.3G167000_v2.0.a1 Prupe.3G167000_v2.0.a1 Prupe.3G167000_v2.0.a1
pyrus_communis	pycom09g07740
rosa_chinensis	RchiOBHm_Chr2g0150111
rosa_laevigata	RLG00000020467
rosa_multiflora	Rmu_sc0005609.1_g000007 Rmu_sc0009445.1_g000004
rosa_roxburghii	Rroxscaffold_2G00097440
rosa_rugosa	Rorug02G0419200
rosa_samantha	Rh2AG477800 Rh2BG490400 Rh2CG464000 Rh2DG499200
rosa_wichuraiana	Rw2G039000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	600
Acc36I	ACCTGC	1 cut(s)	774
AccI	GTMKAC	1 cut(s)	300
AccII	CGCG	1 cut(s)	296
AciI	CCGC	5 cut(s)	149, 296, 396, 403, 635
AclWI	GGATC	1 cut(s)	611
AcsI	RAATTY	2 cut(s)	71, 895
AcuI	CTGAAG	3 cut(s)	533, 576, 747
AfaI	GTAC	2 cut(s)	467, 546
AfiI	CCNNNNNNNGG	3 cut(s)	342, 788, 819
AgsI	TTSAA	3 cut(s)	331, 674, 712
AhdI	GACNNNNNGTC	1 cut(s)	364
AjiI	CACGTC	1 cut(s)	826
AjnI	CCWGG	3 cut(s)	209, 717, 818
AleI	CACNNNNGTG	1 cut(s)	412
AluBI	AGCT	4 cut(s)	200, 372, 643, 878
AluI	AGCT	4 cut(s)	200, 372, 643, 878
Alw21I	GWGCWC	1 cut(s)	419
Alw26I	GTCTC	2 cut(s)	783, 873
Alw44I	GTGCAC	1 cut(s)	415
AlwI	GGATC	1 cut(s)	611
AoxI	GGCC	1 cut(s)	269
ApaLI	GTGCAC	1 cut(s)	415
ApeKI	GCWGC	2 cut(s)	400, 429
ApoI	RAATTY	2 cut(s)	71, 895
AseI	ATTAAT	1 cut(s)	681
AsuC2I	CCSGG	1 cut(s)	305
AsuHPI	GGTGA	2 cut(s)	76, 934
AsuII	TTCGAA	1 cut(s)	915
AxyI	CCTNAGG	1 cut(s)	783
BaeGI	GKGCMC	2 cut(s)	242, 419
BaeI	ACNNNNGTAYC	2 cut(s)	536, 569
BanII	GRGCYC	1 cut(s)	130
BbsI	GAAGAC	1 cut(s)	185
Bbv12I	GWGCWC	1 cut(s)	419
BbvCI	CCTCAGC	1 cut(s)	201
BbvI	GCAGC	2 cut(s)	387, 441
BccI	CCATC	1 cut(s)	85
BciT130I	CCWGG	3 cut(s)	211, 719, 820
BcnI	CCSGG	1 cut(s)	305
BcoDI	GTCTC	2 cut(s)	783, 873
BfaI	CTAG	3 cut(s)	117, 369, 644
BfuAI	ACCTGC	1 cut(s)	774
BglII	AGATCT	1 cut(s)	514
BisI	GCNGC	2 cut(s)	401, 430
BlsI	GCNGC	2 cut(s)	402, 431
Bme1390I	CCNGG	4 cut(s)	211, 305, 719, 820
BmeRI	GACNNNNNGTC	1 cut(s)	364
BmgBI	CACGTC	1 cut(s)	826
BmiI	GGNNCC	2 cut(s)	159, 195
BmrFI	CCNGG	4 cut(s)	211, 305, 719, 820
BmrI	ACTGGG	1 cut(s)	160
BmsI	GCATC	1 cut(s)	125
BmuI	ACTGGG	1 cut(s)	160
BoxI	GACNNNNGTC	1 cut(s)	768
BpiI	GAAGAC	1 cut(s)	185
BpmI	CTGGAG	1 cut(s)	802
Bpu10I	CCTNAGC	1 cut(s)	201
Bpu14I	TTCGAA	1 cut(s)	915
BpuEI	CTTGAG	1 cut(s)	243
BpuMI	CCSGG	1 cut(s)	305
BsaBI	GATNNNNATC	2 cut(s)	513, 681
BsaI	GGTCTC	1 cut(s)	783
BsaJI	CCNNGG	1 cut(s)	819
BsaWI	WCCGGW	1 cut(s)	316
BsaXI	ACNNNNNCTCC	4 cut(s)	215, 245, 489, 519
Bsc4I	CCNNNNNNNGG	3 cut(s)	342, 788, 819
Bse118I	RCCGGY	1 cut(s)	190
Bse1I	ACTGG	3 cut(s)	166, 382, 741
Bse21I	CCTNAGG	1 cut(s)	783
Bse3DI	GCAATG	1 cut(s)	462
Bse8I	GATNNNNATC	2 cut(s)	513, 681
BseBI	CCWGG	3 cut(s)	211, 719, 820
BseDI	CCNNGG	1 cut(s)	819
BseGI	GGATG	1 cut(s)	838
BseJI	GATNNNNATC	2 cut(s)	513, 681
BseLI	CCNNNNNNNGG	3 cut(s)	342, 788, 819
BseMI	GCAATG	1 cut(s)	462
BseMII	CTCAG	3 cut(s)	192, 425, 797
BseNI	ACTGG	3 cut(s)	166, 382, 741
BseRI	GAGGAG	1 cut(s)	771
BseSI	GKGCMC	2 cut(s)	242, 419
BseXI	GCAGC	2 cut(s)	387, 441
Bsh1236I	CGCG	1 cut(s)	296
Bsh1285I	CGRYCG	1 cut(s)	300
BshFI	GGCC	1 cut(s)	271
BsiEI	CGRYCG	1 cut(s)	300
BsiHKAI	GWGCWC	1 cut(s)	419
BsiSI	CCGG	3 cut(s)	191, 305, 317
BslFI	GGGAC	3 cut(s)	22, 325, 836
BslI	CCNNNNNNNGG	3 cut(s)	342, 788, 819
BsmAI	GTCTC	2 cut(s)	783, 873
BsmFI	GGGAC	3 cut(s)	22, 325, 836
BsmI	GAATGC	2 cut(s)	337, 807
BsnI	GGCC	1 cut(s)	271
Bso31I	GGTCTC	1 cut(s)	783
Bsp119I	TTCGAA	1 cut(s)	915
Bsp1286I	GDGCHC	3 cut(s)	130, 242, 419
Bsp143I	GATC	3 cut(s)	514, 616, 748
BspACI	CCGC	5 cut(s)	149, 296, 396, 403, 635
BspANI	GGCC	1 cut(s)	271
BspCNI	CTCAG	3 cut(s)	193, 424, 796
BspFNI	CGCG	1 cut(s)	296
BspLI	GGNNCC	2 cut(s)	159, 195
BspMI	ACCTGC	1 cut(s)	774
BspPI	GGATC	1 cut(s)	611
BspT104I	TTCGAA	1 cut(s)	915
BspTNI	GGTCTC	1 cut(s)	783
BsrDI	GCAATG	1 cut(s)	462
BsrFI	RCCGGY	1 cut(s)	190
BsrI	ACTGG	3 cut(s)	166, 382, 741
BssAI	RCCGGY	1 cut(s)	190
BssECI	CCNNGG	1 cut(s)	819
BssMI	GATC	3 cut(s)	514, 616, 748
Bst2UI	CCWGG	3 cut(s)	211, 719, 820
BstBI	TTCGAA	1 cut(s)	915
BstC8I	GCNNGC	3 cut(s)	140, 242, 398
BstDEI	CTNAG	5 cut(s)	131, 201, 411, 623, 783
BstENI	CCTNNNNNAGG	2 cut(s)	786, 817
BstF5I	GGATG	1 cut(s)	838
BstFNI	CGCG	1 cut(s)	296
BstKTI	GATC	3 cut(s)	517, 619, 751
BstMAI	GTCTC	2 cut(s)	783, 873
BstMBI	GATC	3 cut(s)	514, 616, 748
BstMCI	CGRYCG	1 cut(s)	300
BstMWI	GCNNNNNNNGC	1 cut(s)	397
BstNI	CCWGG	3 cut(s)	211, 719, 820
BstNSI	RCATGY	1 cut(s)	868
BstPAI	GACNNNNGTC	1 cut(s)	768
BstSCI	CCNGG	4 cut(s)	209, 303, 717, 818
BstSLI	GKGCMC	2 cut(s)	242, 419
BstUI	CGCG	1 cut(s)	296
BstV1I	GCAGC	2 cut(s)	387, 441
BstV2I	GAAGAC	1 cut(s)	185
BstX2I	RGATCY	1 cut(s)	514
BstYI	RGATCY	1 cut(s)	514
Bsu36I	CCTNAGG	1 cut(s)	783
BsuRI	GGCC	1 cut(s)	271
BtrI	CACGTC	1 cut(s)	826
BtsCI	GGATG	1 cut(s)	838
BtsIMutI	CAGTG	1 cut(s)	419
BveI	ACCTGC	1 cut(s)	774
Cac8I	GCNNGC	3 cut(s)	140, 242, 398
Cfr10I	RCCGGY	1 cut(s)	190
CseI	GACGC	1 cut(s)	758
Csp6I	GTAC	2 cut(s)	466, 545
CviAII	CATG	3 cut(s)	377, 865, 902
CviQI	GTAC	2 cut(s)	466, 545
DdeI	CTNAG	5 cut(s)	131, 201, 411, 623, 783
DpnI	GATC	3 cut(s)	516, 618, 750
DpnII	GATC	3 cut(s)	514, 616, 748
DraI	TTTAAA	1 cut(s)	565
DriI	GACNNNNNGTC	1 cut(s)	364
Eam1105I	GACNNNNNGTC	1 cut(s)	364
Eco24I	GRGCYC	1 cut(s)	130
Eco31I	GGTCTC	1 cut(s)	783
Eco57I	CTGAAG	3 cut(s)	533, 576, 747
Eco81I	CCTNAGG	1 cut(s)	783
EcoNI	CCTNNNNNAGG	2 cut(s)	786, 817
EcoRII	CCWGG	3 cut(s)	209, 717, 818
EcoT38I	GRGCYC	1 cut(s)	130
FaeI	CATG	3 cut(s)	380, 868, 905
FaqI	GGGAC	3 cut(s)	22, 325, 836
FatI	CATG	3 cut(s)	376, 864, 901
FauI	CCCGC	1 cut(s)	389
FblI	GTMKAC	1 cut(s)	300
Fnu4HI	GCNGC	2 cut(s)	401, 430
FokI	GGATG	1 cut(s)	845
FriOI	GRGCYC	1 cut(s)	130
Fsp4HI	GCNGC	2 cut(s)	401, 430
FspBI	CTAG	3 cut(s)	117, 369, 644
GluI	GCNGC	2 cut(s)	401, 430
GsuI	CTGGAG	1 cut(s)	802
HaeIII	GGCC	1 cut(s)	271
HapII	CCGG	3 cut(s)	191, 305, 317
HgaI	GACGC	1 cut(s)	758
Hin1II	CATG	3 cut(s)	380, 868, 905
HincII	GTYRAC	1 cut(s)	301
HindII	GTYRAC	1 cut(s)	301
HinfI	GANTC	4 cut(s)	181, 256, 313, 802
HpaII	CCGG	3 cut(s)	191, 305, 317
HphI	GGTGA	2 cut(s)	76, 934
Hpy166II	GTNNAC	2 cut(s)	301, 417
Hpy188I	TCNGA	5 cut(s)	125, 157, 255, 595, 727
Hpy188III	TCNNGA	2 cut(s)	260, 785
Hpy8I	GTNNAC	2 cut(s)	301, 417
HpyAV	CCTTC	6 cut(s)	50, 302, 479, 782, 823, 832
HpyCH4IV	ACGT	1 cut(s)	825
HpyCH4V	TGCA	5 cut(s)	417, 608, 693, 845, 864
HpyF10VI	GCNNNNNNNGC	1 cut(s)	397
HpyF3I	CTNAG	5 cut(s)	131, 201, 411, 623, 783
HpySE526I	ACGT	1 cut(s)	825
Hsp92II	CATG	3 cut(s)	380, 868, 905
Kzo9I	GATC	3 cut(s)	514, 616, 748
LmnI	GCTCC	2 cut(s)	157, 388
Lsp1109I	GCAGC	2 cut(s)	387, 441
LweI	GCATC	1 cut(s)	125
MaeI	CTAG	3 cut(s)	117, 369, 644
MaeII	ACGT	1 cut(s)	825
MaeIII	GTNAC	2 cut(s)	583, 826
MalI	GATC	3 cut(s)	516, 618, 750
MboI	GATC	3 cut(s)	514, 616, 748
MboII	GAAGA	5 cut(s)	190, 512, 524, 582, 686
MflI	RGATCY	1 cut(s)	514
MhlI	GDGCHC	3 cut(s)	130, 242, 419
MluCI	AATT	3 cut(s)	71, 872, 895
MlyI	GAGTC	3 cut(s)	175, 250, 307
MmeI	TCCRAC	3 cut(s)	150, 366, 534
MseI	TTAA	5 cut(s)	461, 564, 681, 858, 933
MslI	CAYNNNNRTG	1 cut(s)	412
MspA1I	CMGCKG	1 cut(s)	200
MspI	CCGG	3 cut(s)	191, 305, 317
MspR9I	CCNGG	4 cut(s)	211, 305, 719, 820
Mva1269I	GAATGC	2 cut(s)	337, 807
MvaI	CCWGG	3 cut(s)	211, 719, 820
MvnI	CGCG	1 cut(s)	296
MwoI	GCNNNNNNNGC	1 cut(s)	397
NciI	CCSGG	1 cut(s)	305
NdeII	GATC	3 cut(s)	514, 616, 748
NlaIII	CATG	3 cut(s)	380, 868, 905
NlaIV	GGNNCC	2 cut(s)	159, 195
NmuCI	GTSAC	1 cut(s)	826
NspI	RCATGY	1 cut(s)	868
NspV	TTCGAA	1 cut(s)	915
OliI	CACNNNNGTG	1 cut(s)	412
PctI	GAATGC	2 cut(s)	337, 807
PfeI	GAWTC	1 cut(s)	802
PfoI	TCCNGGA	1 cut(s)	209
PkrI	GCNGC	2 cut(s)	402, 431
PleI	GAGTC	3 cut(s)	175, 250, 307
PpsI	GAGTC	3 cut(s)	175, 250, 307
PshAI	GACNNNNGTC	1 cut(s)	768
PshBI	ATTAAT	1 cut(s)	681
PsiI	TTATAA	1 cut(s)	600
Psp6I	CCWGG	3 cut(s)	209, 717, 818
PspGI	CCWGG	3 cut(s)	209, 717, 818
PspN4I	GGNNCC	2 cut(s)	159, 195
PsuI	RGATCY	1 cut(s)	514
PvuII	CAGCTG	1 cut(s)	200
RsaI	GTAC	2 cut(s)	467, 546
RsaNI	GTAC	2 cut(s)	466, 545
RseI	CAYNNNNRTG	1 cut(s)	412
SalI	GTCGAC	1 cut(s)	299
SaqAI	TTAA	5 cut(s)	461, 564, 681, 858, 933
SatI	GCNGC	2 cut(s)	401, 430
Sau3AI	GATC	3 cut(s)	514, 616, 748
SchI	GAGTC	3 cut(s)	175, 250, 307
ScrFI	CCNGG	4 cut(s)	211, 305, 719, 820
SduI	GDGCHC	3 cut(s)	130, 242, 419
SfaNI	GCATC	1 cut(s)	125
SfuI	TTCGAA	1 cut(s)	915
SmiMI	CAYNNNNRTG	1 cut(s)	412
SmlI	CTYRAG	1 cut(s)	258
SmoI	CTYRAG	1 cut(s)	258
Sse9I	AATT	3 cut(s)	71, 872, 895
SsiI	CCGC	5 cut(s)	149, 296, 396, 403, 635
SspMI	CTAG	3 cut(s)	117, 369, 644
StyD4I	CCNGG	4 cut(s)	209, 303, 717, 818
TaiI	ACGT	1 cut(s)	828
TaqI	TCGA	2 cut(s)	300, 915
TasI	AATT	3 cut(s)	71, 872, 895
TfiI	GAWTC	1 cut(s)	802
Tru1I	TTAA	5 cut(s)	461, 564, 681, 858, 933
Tru9I	TTAA	5 cut(s)	461, 564, 681, 858, 933
TscAI	CASTG	1 cut(s)	419
TseFI	GTSAC	1 cut(s)	826
TseI	GCWGC	2 cut(s)	400, 429
Tsp45I	GTSAC	1 cut(s)	826
TspDTI	ATGAA	2 cut(s)	461, 525
TspGWI	ACGGA	1 cut(s)	845
TspRI	CASTG	1 cut(s)	419
VneI	GTGCAC	1 cut(s)	415
VspI	ATTAAT	1 cut(s)	681
XagI	CCTNNNNNAGG	2 cut(s)	786, 817
XapI	RAATTY	2 cut(s)	71, 895
XceI	RCATGY	1 cut(s)	868
XcmI	CCANNNNNNNNNTGG	1 cut(s)	217
XmiI	GTMKAC	1 cut(s)	300
XspI	CTAG	3 cut(s)	117, 369, 644

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.