Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0012441

Physical Location & Seq

Genomic Coordinates Reverse (-)

71919195 .. 71922512

Gene Structure 3318 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG499200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGCTTCTCCAAACCCAGTCCCTCACTCCCCATTTGGCTCTTCTCCCACTCCCTCCTTCAAAACCCATTTCCAAAACCCAATTCTTCAACCCGAACCCACTTCGCAGAACCCACTCCCCACCTCCAAGATGCTCGCTTTCCGCCGTTTCGGAGCCGACCCAGTTGCAAAAACCGAGCACCAAGCCGTTTCCGGCCGAGGTTTCACGGACCATTTTGGAGTTGGTCTCTGTGGGCACGCTTTCCACTTTGACCCAACAAGGTTGGCCTCTGGGAATTGGGGTTCGCTTTGCTGTTGACCCAGAAGGGACTCCAGTCTTGTGCTTGAACGACTCCAATAGACAATTCTCTATTGATAGGAGGTCTAGTCTCCATGTTCAGTTAGAGCAATCCGGGTTGAGGACGCCTCAATGCACCATACTAGGCAGCATTGACAAACCAGAAGACAGGACCTTTCTGAAGTACCTTCATTCAGTGTGGAGAAAAAGGTTTGAAGAAGAAGTTGATGAAGATCTTCTATATGTTGTTGATGTGGACCGAGTACTTCAGATGGAGGACTTTAGAGAGGTTGGTACATGGATCACATCTTCAGATTATAAAAAAGCTCAACCTGATCCTCTCCGAGACTTTTCAGAAAAGCTAGTGAATGATATAAACACCAACAATGTTGAAGATATTAACCGTTTTTGCAACATTTATGCTGATTTGGACTTTCAGGTTTCTGCTAACTCAACTTTTTGTTACTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009767 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0015979 GO:0018130 GO:0019222 GO:0019438 GO:0019684 GO:0022900 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0033013 GO:0033014 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043495 GO:0044237 GO:0044249 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051193 GO:0051194 GO:0055114 GO:0065007 GO:0070453 GO:0070455 GO:0071704 GO:1901360 GO:1901362 GO:1901401 GO:1901403 GO:1901463 GO:1901465 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2470

Protein Analysis

248

Amino Acids

28.2

Weight (kDa)

5.45

Isoelectric Point (pI)

48.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012441)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21200
fragaria_vesca	FvH4_6g37280
malus_domestica	MD09G1158800.v1.1
prunus_persica	Prupe.3G167000_v2.0.a1 Prupe.3G167000_v2.0.a1 Prupe.3G167000_v2.0.a1 Prupe.3G167000_v2.0.a1
pyrus_communis	pycom09g07740
rosa_chinensis	RchiOBHm_Chr2g0150111
rosa_laevigata	RLG00000020467
rosa_multiflora	Rmu_sc0005609.1_g000007 Rmu_sc0009445.1_g000004
rosa_roxburghii	Rroxscaffold_2G00097440
rosa_rugosa	Rorug02G0419200
rosa_samantha	Rh2AG477800 Rh2BG490400 Rh2CG464000 Rh2DG499200
rosa_wichuraiana	Rw2G039000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	594
AciI	CCGC	1 cut(s)	141
AclWI	GGATC	2 cut(s)	584, 605
AcoI	YGGCCR	1 cut(s)	192
AcuI	CTGAAG	3 cut(s)	476, 527, 570
AcyI	GRCGYC	1 cut(s)	401
AfaI	GTAC	3 cut(s)	461, 540, 571
AfiI	CCNNNNNNNGG	1 cut(s)	396
AgsI	TTSAA	5 cut(s)	60, 88, 325, 491, 668
AjuI	GAANNNNNNNTTGG	4 cut(s)	65, 97, 326, 358
AloI	GAACNNNNNNTCC	2 cut(s)	264, 296
AluBI	AGCT	2 cut(s)	602, 637
AluI	AGCT	2 cut(s)	602, 637
Alw21I	GWGCWC	1 cut(s)	179
Alw26I	GTCTC	3 cut(s)	229, 371, 615
AlwI	GGATC	2 cut(s)	584, 605
AoxI	GGCC	2 cut(s)	192, 263
ApeKI	GCWGC	1 cut(s)	423
Asp700I	GAANNNNTTC	1 cut(s)	510
AspS9I	GGNCC	3 cut(s)	207, 447, 532
AsuC2I	CCSGG	1 cut(s)	391
AvaII	GGWCC	3 cut(s)	207, 447, 532
BaeGI	GKGCMC	1 cut(s)	236
BbsI	GAAGAC	1 cut(s)	447
Bbv12I	GWGCWC	1 cut(s)	179
BbvI	GCAGC	1 cut(s)	435
BccI	CCATC	1 cut(s)	541
BceAI	ACGGC	2 cut(s)	128, 169
BcgI	CGANNNNNNTGC	2 cut(s)	145, 179
BcnI	CCSGG	1 cut(s)	391
BcoDI	GTCTC	3 cut(s)	229, 371, 615
BfaI	CTAG	3 cut(s)	363, 419, 638
BglII	AGATCT	1 cut(s)	508
BisI	GCNGC	1 cut(s)	424
BlsI	GCNGC	1 cut(s)	425
BmcAI	AGTACT	1 cut(s)	540
Bme1390I	CCNGG	1 cut(s)	391
Bme18I	GGWCC	3 cut(s)	207, 447, 532
BmgT120I	GGNCC	3 cut(s)	207, 447, 532
BmiI	GGNNCC	1 cut(s)	153
BmrFI	CCNGG	1 cut(s)	391
BmrI	ACTGGG	2 cut(s)	10, 154
BmsI	GCATC	1 cut(s)	119
BmuI	ACTGGG	2 cut(s)	10, 154
BoxI	GACNNNNGTC	1 cut(s)	311
BpiI	GAAGAC	1 cut(s)	447
BplI	GAGNNNNNCTC	4 cut(s)	209, 241, 388, 420
BpmI	CTGGAG	1 cut(s)	294
BpuMI	CCSGG	1 cut(s)	391
BsaBI	GATNNNNATC	1 cut(s)	507
BsaHI	GRCGYC	1 cut(s)	401
BsaI	GGTCTC	1 cut(s)	229
BsaJI	CCNNGG	1 cut(s)	195
BsaXI	ACNNNNNCTCC	2 cut(s)	349, 379
Bsc4I	CCNNNNNNNGG	1 cut(s)	396
Bse1I	ACTGG	3 cut(s)	16, 160, 311
Bse8I	GATNNNNATC	1 cut(s)	507
BseDI	CCNNGG	1 cut(s)	195
BseJI	GATNNNNATC	1 cut(s)	507
BseLI	CCNNNNNNNGG	1 cut(s)	396
BseNI	ACTGG	3 cut(s)	16, 160, 311
BseSI	GKGCMC	1 cut(s)	236
BseX3I	CGGCCG	1 cut(s)	192
BseXI	GCAGC	1 cut(s)	435
Bsh1285I	CGRYCG	1 cut(s)	195
BshFI	GGCC	2 cut(s)	194, 265
BsiEI	CGRYCG	1 cut(s)	195
BsiHKAI	GWGCWC	1 cut(s)	179
BsiSI	CCGG	2 cut(s)	191, 390
BslFI	GGGAC	2 cut(s)	4, 319
BslI	CCNNNNNNNGG	1 cut(s)	396
BsmAI	GTCTC	3 cut(s)	229, 371, 615
BsmFI	GGGAC	2 cut(s)	4, 319
BsnI	GGCC	2 cut(s)	194, 265
Bso31I	GGTCTC	1 cut(s)	229
Bsp1286I	GDGCHC	2 cut(s)	179, 236
Bsp143I	GATC	3 cut(s)	508, 576, 610
BspACI	CCGC	1 cut(s)	141
BspANI	GGCC	2 cut(s)	194, 265
BspLI	GGNNCC	1 cut(s)	153
BspPI	GGATC	2 cut(s)	584, 605
BspQI	GCTCTTC	1 cut(s)	45
BspTNI	GGTCTC	1 cut(s)	229
BsrI	ACTGG	3 cut(s)	16, 160, 311
BssECI	CCNNGG	1 cut(s)	195
BssMI	GATC	3 cut(s)	508, 576, 610
BssNI	GRCGYC	1 cut(s)	401
Bst4CI	ACNGT	2 cut(s)	680, 743
Bst6I	CTCTTC	1 cut(s)	45
BstACI	GRCGYC	1 cut(s)	401
BstC8I	GCNNGC	2 cut(s)	134, 236
BstKTI	GATC	3 cut(s)	511, 579, 613
BstMAI	GTCTC	3 cut(s)	229, 371, 615
BstMBI	GATC	3 cut(s)	508, 576, 610
BstMCI	CGRYCG	1 cut(s)	195
BstPAI	GACNNNNGTC	1 cut(s)	311
BstSCI	CCNGG	1 cut(s)	389
BstSLI	GKGCMC	1 cut(s)	236
BstV1I	GCAGC	1 cut(s)	435
BstV2I	GAAGAC	1 cut(s)	447
BstX2I	RGATCY	1 cut(s)	508
BstYI	RGATCY	1 cut(s)	508
BstZI	CGGCCG	1 cut(s)	192
BsuRI	GGCC	2 cut(s)	194, 265
BtsIMutI	CAGTG	1 cut(s)	477
Cac8I	GCNNGC	2 cut(s)	134, 236
Cfr13I	GGNCC	3 cut(s)	207, 447, 532
CseI	GACGC	1 cut(s)	409
Csp6I	GTAC	3 cut(s)	460, 539, 570
CviAII	CATG	2 cut(s)	371, 573
CviJI	RGCY	7 cut(s)	38, 154, 184, 194, 265, 602, 637
CviKI_1	RGCY	7 cut(s)	38, 154, 184, 194, 265, 602, 637
CviQI	GTAC	3 cut(s)	460, 539, 570
DpnI	GATC	3 cut(s)	510, 578, 612
DpnII	GATC	3 cut(s)	508, 576, 610
EaeI	YGGCCR	1 cut(s)	192
EagI	CGGCCG	1 cut(s)	192
Eam1104I	CTCTTC	1 cut(s)	45
EarI	CTCTTC	1 cut(s)	45
EciI	GGCGGA	1 cut(s)	130
EclXI	CGGCCG	1 cut(s)	192
Eco31I	GGTCTC	1 cut(s)	229
Eco47I	GGWCC	3 cut(s)	207, 447, 532
Eco52I	CGGCCG	1 cut(s)	192
Eco57I	CTGAAG	3 cut(s)	476, 527, 570
EcoO109I	RGGNCCY	1 cut(s)	447
FaeI	CATG	2 cut(s)	374, 576
FaiI	YATR	8 cut(s)	372, 416, 517, 519, 574, 594, 650, 696
FaqI	GGGAC	2 cut(s)	4, 319
FatI	CATG	2 cut(s)	370, 572
Fnu4HI	GCNGC	1 cut(s)	424
Fsp4HI	GCNGC	1 cut(s)	424
FspBI	CTAG	3 cut(s)	363, 419, 638
GluI	GCNGC	1 cut(s)	424
GsuI	CTGGAG	1 cut(s)	294
HaeIII	GGCC	2 cut(s)	194, 265
HapII	CCGG	2 cut(s)	191, 390
HgaI	GACGC	1 cut(s)	409
Hin1I	GRCGYC	1 cut(s)	401
Hin1II	CATG	2 cut(s)	374, 576
HincII	GTYRAC	1 cut(s)	295
HindII	GTYRAC	1 cut(s)	295
HinfI	GANTC	2 cut(s)	307, 329
HpaII	CCGG	2 cut(s)	191, 390
Hpy166II	GTNNAC	2 cut(s)	295, 532
Hpy188I	TCNGA	6 cut(s)	151, 456, 546, 589, 620, 631
Hpy8I	GTNNAC	2 cut(s)	295, 532
HpyAV	CCTTC	3 cut(s)	66, 296, 473
HpyCH4III	ACNGT	2 cut(s)	680, 743
HpyCH4V	TGCA	3 cut(s)	166, 411, 687
Hsp92I	GRCGYC	1 cut(s)	401
Hsp92II	CATG	2 cut(s)	374, 576
Kzo9I	GATC	3 cut(s)	508, 576, 610
LguI	GCTCTTC	1 cut(s)	45
LmnI	GCTCC	1 cut(s)	151
Lsp1109I	GCAGC	1 cut(s)	435
LweI	GCATC	1 cut(s)	119
MaeI	CTAG	3 cut(s)	363, 419, 638
MaeIII	GTNAC	1 cut(s)	737
MalI	GATC	3 cut(s)	510, 578, 612
MboI	GATC	3 cut(s)	508, 576, 610
MboII	GAAGA	9 cut(s)	32, 76, 452, 503, 503, 506, 518, 576, 680
MflI	RGATCY	1 cut(s)	508
MhlI	GDGCHC	2 cut(s)	179, 236
MluCI	AATT	3 cut(s)	80, 273, 341
MlyI	GAGTC	2 cut(s)	301, 323
MroXI	GAANNNNTTC	1 cut(s)	510
MseI	TTAA	1 cut(s)	675
MspI	CCGG	2 cut(s)	191, 390
MspR9I	CCNGG	1 cut(s)	391
NciI	CCSGG	1 cut(s)	391
NdeII	GATC	3 cut(s)	508, 576, 610
NlaIII	CATG	2 cut(s)	374, 576
NlaIV	GGNNCC	1 cut(s)	153
NmeAIII	GCCGAG	1 cut(s)	220
PciSI	GCTCTTC	1 cut(s)	45
PdmI	GAANNNNTTC	1 cut(s)	510
PkrI	GCNGC	1 cut(s)	425
PleI	GAGTC	2 cut(s)	301, 323
PpsI	GAGTC	2 cut(s)	301, 323
PpuMI	RGGWCCY	1 cut(s)	447
PshAI	GACNNNNGTC	1 cut(s)	311
PsiI	TTATAA	1 cut(s)	594
Psp5II	RGGWCCY	1 cut(s)	447
PspN4I	GGNNCC	1 cut(s)	153
PspPI	GGNCC	3 cut(s)	207, 447, 532
PspPPI	RGGWCCY	1 cut(s)	447
PsuI	RGATCY	1 cut(s)	508
RsaI	GTAC	3 cut(s)	461, 540, 571
RsaNI	GTAC	3 cut(s)	460, 539, 570
SapI	GCTCTTC	1 cut(s)	45
SaqAI	TTAA	1 cut(s)	675
SatI	GCNGC	1 cut(s)	424
Sau3AI	GATC	3 cut(s)	508, 576, 610
Sau96I	GGNCC	3 cut(s)	207, 447, 532
ScaI	AGTACT	1 cut(s)	540
SchI	GAGTC	2 cut(s)	301, 323
ScrFI	CCNGG	1 cut(s)	391
SduI	GDGCHC	2 cut(s)	179, 236
SfaNI	GCATC	1 cut(s)	119
SinI	GGWCC	3 cut(s)	207, 447, 532
Sse9I	AATT	3 cut(s)	80, 273, 341
SsiI	CCGC	1 cut(s)	141
SspMI	CTAG	3 cut(s)	363, 419, 638
StyD4I	CCNGG	1 cut(s)	389
TaaI	ACNGT	2 cut(s)	680, 743
TaqII	GACCGA	1 cut(s)	549
TasI	AATT	3 cut(s)	80, 273, 341
TatI	WGTACW	1 cut(s)	538
Tru1I	TTAA	1 cut(s)	675
Tru9I	TTAA	1 cut(s)	675
TscAI	CASTG	1 cut(s)	477
TseI	GCWGC	1 cut(s)	423
TspDTI	ATGAA	2 cut(s)	455, 519
TspGWI	ACGGA	1 cut(s)	220
TspRI	CASTG	1 cut(s)	477
VpaK11BI	GGWCC	3 cut(s)	207, 447, 532
XcmI	CCANNNNNNNNNTGG	1 cut(s)	217
XmnI	GAANNNNTTC	1 cut(s)	510
XspI	CTAG	3 cut(s)	363, 419, 638
ZrmI	AGTACT	1 cut(s)	540

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.