Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009445.1

Orthogroup ID

OG0012441

Physical Location & Seq

Genomic Coordinates Forward (+)

24141 .. 27682

Gene Structure 3542 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009445.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

atgcttctccaaacccagtccctcactccccatttggctcttctcccactccctccttcaaaacccatttccaaaacccaattcttcaacccgaacccacttcgcagaacccactccccacctccaagatgctcgctttccgccgtttcggagccgacccagttgcaaaaaccgagcaccaagccgtttccggccgaggtttcacggaccattttggagttggtctctgtgggcacgctttccactttgacccaacaaggttggcctctgggaattggggttcgctttgctgttgacccagaagggactccagtcttgtgcttgaacgactccaatagacaattctctattgataggaggtctagtctccatgttcagttagagcaatccgggttgaggacgcctcaatgcaccatactaggcagcattgacaaaccagaagacaggacctttttgaagtaccttcattcagtgtggagaaaaaggtttgaagaagaagttgatgaagatcttctatatgttgttgatgtggaccgagtacttcagatggaggactttagagaggttggtacatggatcacatcttcagattataaaaaagctcaacctgatcctctccgagacttttcagaaaagctagtgaatgatataaacaccaacaatgttgaagatattaaccgtttttgcaacatttatgctgatttggactttcaggtatctgaagcaaagttgatatggattgatcgactagggcttgacatgcgtctttggtctcctcagaacggtatttttgaggttcgcattccgttccccagagatgtgacggatgaaaaaggagcaaagtcaatgtttaatttacctgtgacatcagccacgttgtgcttctctccaaacttgcagcagcccaagcctgggcaagaaaaaaggcaacgacatggaatttatcttgccctgggtcaaagaaaggcagagtttgcctggttgaaagaccaccggtggaagggaaattttgctgttgcctggtcaccacatcatcattccctcattttgcccgagcaaagtcataccgatggactagctcttagagtttcttcatcaagaagccaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009767 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0015979 GO:0018130 GO:0019222 GO:0019438 GO:0019684 GO:0022900 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0033013 GO:0033014 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043495 GO:0044237 GO:0044249 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051193 GO:0051194 GO:0055114 GO:0065007 GO:0070453 GO:0070455 GO:0071704 GO:1901360 GO:1901362 GO:1901401 GO:1901403 GO:1901463 GO:1901465 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2470

Protein Analysis

369

Amino Acids

42.1

Weight (kDa)

7.71

Isoelectric Point (pI)

51.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012441)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21200
fragaria_vesca	FvH4_6g37280
malus_domestica	MD09G1158800.v1.1
prunus_persica	Prupe.3G167000_v2.0.a1 Prupe.3G167000_v2.0.a1 Prupe.3G167000_v2.0.a1 Prupe.3G167000_v2.0.a1
pyrus_communis	pycom09g07740
rosa_chinensis	RchiOBHm_Chr2g0150111
rosa_laevigata	RLG00000020467
rosa_multiflora	Rmu_sc0005609.1_g000007 Rmu_sc0009445.1_g000004
rosa_roxburghii	Rroxscaffold_2G00097440
rosa_rugosa	Rorug02G0419200
rosa_samantha	Rh2AG477800 Rh2BG490400 Rh2CG464000 Rh2DG499200
rosa_wichuraiana	Rw2G039000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	594
AciI	CCGC	1 cut(s)	141
AclWI	GGATC	2 cut(s)	584, 605
AcoI	YGGCCR	1 cut(s)	192
AcsI	RAATTY	2 cut(s)	939, 1006
AcuI	CTGAAG	3 cut(s)	527, 570, 741
AcyI	GRCGYC	1 cut(s)	401
AdeI	CACNNNGTG	1 cut(s)	879
AfaI	GTAC	3 cut(s)	461, 540, 571
AfiI	CCNNNNNNNGG	5 cut(s)	396, 782, 911, 912, 1000
AgeI	ACCGGT	1 cut(s)	993
AgsI	TTSAA	7 cut(s)	60, 88, 325, 457, 491, 668, 985
AjnI	CCWGG	4 cut(s)	910, 951, 977, 1019
AjuI	GAANNNNNNNTTGG	4 cut(s)	65, 97, 326, 358
AloI	GAACNNNNNNTCC	2 cut(s)	264, 296
AluBI	AGCT	3 cut(s)	602, 637, 1079
AluI	AGCT	3 cut(s)	602, 637, 1079
Alw21I	GWGCWC	1 cut(s)	179
Alw26I	GTCTC	4 cut(s)	229, 371, 615, 777
AlwI	GGATC	2 cut(s)	584, 605
Ama87I	CYCGRG	1 cut(s)	1052
AoxI	GGCC	2 cut(s)	192, 263
ApeKI	GCWGC	3 cut(s)	423, 898, 901
ApoI	RAATTY	2 cut(s)	939, 1006
AsiGI	ACCGGT	1 cut(s)	993
Asp700I	GAANNNNTTC	1 cut(s)	510
AspS9I	GGNCC	3 cut(s)	207, 447, 532
AsuC2I	CCSGG	1 cut(s)	391
AsuHPI	GGTGA	1 cut(s)	1017
AvaI	CYCGRG	1 cut(s)	1052
AvaII	GGWCC	3 cut(s)	207, 447, 532
BaeGI	GKGCMC	1 cut(s)	236
BbsI	GAAGAC	1 cut(s)	447
Bbv12I	GWGCWC	1 cut(s)	179
BbvI	GCAGC	3 cut(s)	435, 910, 913
BccI	CCATC	2 cut(s)	541, 1064
BceAI	ACGGC	2 cut(s)	128, 169
BcgI	CGANNNNNNTGC	2 cut(s)	145, 179
BciT130I	CCWGG	4 cut(s)	912, 953, 979, 1021
BcnI	CCSGG	1 cut(s)	391
BcoDI	GTCTC	4 cut(s)	229, 371, 615, 777
BfaI	CTAG	5 cut(s)	363, 419, 638, 749, 1076
BglII	AGATCT	1 cut(s)	508
BisI	GCNGC	3 cut(s)	424, 899, 902
BlsI	GCNGC	3 cut(s)	425, 900, 903
BmcAI	AGTACT	1 cut(s)	540
Bme1390I	CCNGG	5 cut(s)	391, 912, 953, 979, 1021
Bme18I	GGWCC	3 cut(s)	207, 447, 532
BmeT110I	CYCGRG	1 cut(s)	1052
BmgT120I	GGNCC	3 cut(s)	207, 447, 532
BmiI	GGNNCC	1 cut(s)	153
BmrFI	CCNGG	5 cut(s)	391, 912, 953, 979, 1021
BmrI	ACTGGG	2 cut(s)	10, 154
BmsI	GCATC	1 cut(s)	119
BmuI	ACTGGG	2 cut(s)	10, 154
BoxI	GACNNNNGTC	2 cut(s)	311, 762
BpiI	GAAGAC	1 cut(s)	447
BplI	GAGNNNNNCTC	4 cut(s)	209, 241, 388, 420
BpmI	CTGGAG	1 cut(s)	294
BpuMI	CCSGG	1 cut(s)	391
BsaBI	GATNNNNATC	1 cut(s)	507
BsaHI	GRCGYC	1 cut(s)	401
BsaI	GGTCTC	2 cut(s)	229, 777
BsaJI	CCNNGG	4 cut(s)	195, 911, 951, 952
BsaWI	WCCGGW	1 cut(s)	993
BsaXI	ACNNNNNCTCC	2 cut(s)	349, 379
Bsc4I	CCNNNNNNNGG	5 cut(s)	396, 782, 911, 912, 1000
Bse118I	RCCGGY	1 cut(s)	993
Bse1I	ACTGG	3 cut(s)	16, 160, 311
Bse8I	GATNNNNATC	1 cut(s)	507
BseBI	CCWGG	4 cut(s)	912, 953, 979, 1021
BseDI	CCNNGG	4 cut(s)	195, 911, 951, 952
BseGI	GGATG	1 cut(s)	832
BseJI	GATNNNNATC	1 cut(s)	507
BseLI	CCNNNNNNNGG	5 cut(s)	396, 782, 911, 912, 1000
BseMII	CTCAG	1 cut(s)	791
BseNI	ACTGG	3 cut(s)	16, 160, 311
BseRI	GAGGAG	1 cut(s)	765
BseSI	GKGCMC	1 cut(s)	236
BseX3I	CGGCCG	1 cut(s)	192
BseXI	GCAGC	3 cut(s)	435, 910, 913
Bsh1285I	CGRYCG	1 cut(s)	195
BshFI	GGCC	2 cut(s)	194, 265
BshTI	ACCGGT	1 cut(s)	993
BsiEI	CGRYCG	1 cut(s)	195
BsiHKAI	GWGCWC	1 cut(s)	179
BsiHKCI	CYCGRG	1 cut(s)	1052
BsiSI	CCGG	3 cut(s)	191, 390, 994
BslFI	GGGAC	2 cut(s)	4, 319
BslI	CCNNNNNNNGG	5 cut(s)	396, 782, 911, 912, 1000
BsmAI	GTCTC	4 cut(s)	229, 371, 615, 777
BsmFI	GGGAC	2 cut(s)	4, 319
BsmI	GAATGC	1 cut(s)	801
BsnI	GGCC	2 cut(s)	194, 265
Bso31I	GGTCTC	2 cut(s)	229, 777
BsoBI	CYCGRG	1 cut(s)	1052
Bsp1286I	GDGCHC	2 cut(s)	179, 236
Bsp143I	GATC	4 cut(s)	508, 576, 610, 742
BspACI	CCGC	1 cut(s)	141
BspANI	GGCC	2 cut(s)	194, 265
BspCNI	CTCAG	1 cut(s)	790
BspLI	GGNNCC	1 cut(s)	153
BspPI	GGATC	2 cut(s)	584, 605
BspQI	GCTCTTC	1 cut(s)	45
BspTNI	GGTCTC	2 cut(s)	229, 777
BsrFI	RCCGGY	1 cut(s)	993
BsrI	ACTGG	3 cut(s)	16, 160, 311
BssAI	RCCGGY	1 cut(s)	993
BssECI	CCNNGG	4 cut(s)	195, 911, 951, 952
BssMI	GATC	4 cut(s)	508, 576, 610, 742
BssNI	GRCGYC	1 cut(s)	401
Bst2UI	CCWGG	4 cut(s)	912, 953, 979, 1021
Bst4CI	ACNGT	2 cut(s)	680, 785
Bst6I	CTCTTC	1 cut(s)	45
BstACI	GRCGYC	1 cut(s)	401
BstAPI	GCANNNNNTGC	1 cut(s)	974
BstC8I	GCNNGC	2 cut(s)	134, 236
BstDEI	CTNAG	2 cut(s)	777, 1082
BstEII	GGTNACC	1 cut(s)	1023
BstF5I	GGATG	1 cut(s)	832
BstKTI	GATC	4 cut(s)	511, 579, 613, 745
BstMAI	GTCTC	4 cut(s)	229, 371, 615, 777
BstMBI	GATC	4 cut(s)	508, 576, 610, 742
BstMCI	CGRYCG	1 cut(s)	195
BstMWI	GCNNNNNNNGC	3 cut(s)	760, 907, 974
BstNI	CCWGG	4 cut(s)	912, 953, 979, 1021
BstNSI	RCATGY	1 cut(s)	763
BstPAI	GACNNNNGTC	2 cut(s)	311, 762
BstPI	GGTNACC	1 cut(s)	1023
BstSCI	CCNGG	5 cut(s)	389, 910, 951, 977, 1019
BstSLI	GKGCMC	1 cut(s)	236
BstV1I	GCAGC	3 cut(s)	435, 910, 913
BstV2I	GAAGAC	1 cut(s)	447
BstX2I	RGATCY	1 cut(s)	508
BstYI	RGATCY	1 cut(s)	508
BstZI	CGGCCG	1 cut(s)	192
BsuRI	GGCC	2 cut(s)	194, 265
BtsCI	GGATG	1 cut(s)	832
BtsIMutI	CAGTG	1 cut(s)	477
Cac8I	GCNNGC	2 cut(s)	134, 236
Cfr10I	RCCGGY	1 cut(s)	993
Cfr13I	GGNCC	3 cut(s)	207, 447, 532
CseI	GACGC	2 cut(s)	409, 752
Csp6I	GTAC	3 cut(s)	460, 539, 570
CspAI	ACCGGT	1 cut(s)	993
CviAII	CATG	4 cut(s)	371, 573, 760, 935
CviQI	GTAC	3 cut(s)	460, 539, 570
DdeI	CTNAG	2 cut(s)	777, 1082
DpnI	GATC	4 cut(s)	510, 578, 612, 744
DpnII	GATC	4 cut(s)	508, 576, 610, 742
DraIII	CACNNNGTG	1 cut(s)	879
EaeI	YGGCCR	1 cut(s)	192
EagI	CGGCCG	1 cut(s)	192
Eam1104I	CTCTTC	1 cut(s)	45
EarI	CTCTTC	1 cut(s)	45
EciI	GGCGGA	1 cut(s)	130
EclXI	CGGCCG	1 cut(s)	192
Eco31I	GGTCTC	2 cut(s)	229, 777
Eco47I	GGWCC	3 cut(s)	207, 447, 532
Eco52I	CGGCCG	1 cut(s)	192
Eco57I	CTGAAG	3 cut(s)	527, 570, 741
Eco88I	CYCGRG	1 cut(s)	1052
Eco91I	GGTNACC	1 cut(s)	1023
EcoO109I	RGGNCCY	1 cut(s)	447
EcoO65I	GGTNACC	1 cut(s)	1023
EcoRII	CCWGG	4 cut(s)	910, 951, 977, 1019
FaeI	CATG	4 cut(s)	374, 576, 763, 938
FaqI	GGGAC	2 cut(s)	4, 319
FatI	CATG	4 cut(s)	370, 572, 759, 934
Fnu4HI	GCNGC	3 cut(s)	424, 899, 902
FokI	GGATG	1 cut(s)	839
Fsp4HI	GCNGC	3 cut(s)	424, 899, 902
FspBI	CTAG	5 cut(s)	363, 419, 638, 749, 1076
GluI	GCNGC	3 cut(s)	424, 899, 902
GsuI	CTGGAG	1 cut(s)	294
HaeIII	GGCC	2 cut(s)	194, 265
HapII	CCGG	3 cut(s)	191, 390, 994
HgaI	GACGC	2 cut(s)	409, 752
Hin1I	GRCGYC	1 cut(s)	401
Hin1II	CATG	4 cut(s)	374, 576, 763, 938
HincII	GTYRAC	1 cut(s)	295
HindII	GTYRAC	1 cut(s)	295
HinfI	GANTC	2 cut(s)	307, 329
HpaII	CCGG	3 cut(s)	191, 390, 994
HphI	GGTGA	1 cut(s)	1017
Hpy166II	GTNNAC	2 cut(s)	295, 532
Hpy188I	TCNGA	7 cut(s)	151, 546, 589, 620, 631, 721, 780
Hpy188III	TCNNGA	1 cut(s)	1098
Hpy8I	GTNNAC	2 cut(s)	295, 532
HpyAV	CCTTC	4 cut(s)	66, 296, 473, 994
HpyCH4III	ACNGT	2 cut(s)	680, 785
HpyCH4IV	ACGT	1 cut(s)	875
HpyCH4V	TGCA	4 cut(s)	166, 411, 687, 898
HpyF10VI	GCNNNNNNNGC	3 cut(s)	760, 907, 974
HpyF3I	CTNAG	2 cut(s)	777, 1082
HpySE526I	ACGT	1 cut(s)	875
Hsp92I	GRCGYC	1 cut(s)	401
Hsp92II	CATG	4 cut(s)	374, 576, 763, 938
Kzo9I	GATC	4 cut(s)	508, 576, 610, 742
LguI	GCTCTTC	1 cut(s)	45
LmnI	GCTCC	2 cut(s)	151, 836
Lsp1109I	GCAGC	3 cut(s)	435, 910, 913
LweI	GCATC	1 cut(s)	119
MaeI	CTAG	5 cut(s)	363, 419, 638, 749, 1076
MaeII	ACGT	1 cut(s)	875
MaeIII	GTNAC	3 cut(s)	820, 862, 1023
MalI	GATC	4 cut(s)	510, 578, 612, 744
MboI	GATC	4 cut(s)	508, 576, 610, 742
MflI	RGATCY	1 cut(s)	508
MhlI	GDGCHC	2 cut(s)	179, 236
MluCI	AATT	6 cut(s)	80, 273, 341, 853, 939, 1006
MlyI	GAGTC	2 cut(s)	301, 323
MroXI	GAANNNNTTC	1 cut(s)	510
MseI	TTAA	2 cut(s)	675, 852
MslI	CAYNNNNRTG	1 cut(s)	1068
MspI	CCGG	3 cut(s)	191, 390, 994
MspR9I	CCNGG	5 cut(s)	391, 912, 953, 979, 1021
Mva1269I	GAATGC	1 cut(s)	801
MvaI	CCWGG	4 cut(s)	912, 953, 979, 1021
MwoI	GCNNNNNNNGC	3 cut(s)	760, 907, 974
NciI	CCSGG	1 cut(s)	391
NdeII	GATC	4 cut(s)	508, 576, 610, 742
NlaIII	CATG	4 cut(s)	374, 576, 763, 938
NlaIV	GGNNCC	1 cut(s)	153
NmeAIII	GCCGAG	1 cut(s)	220
NmuCI	GTSAC	3 cut(s)	820, 862, 1023
NspI	RCATGY	1 cut(s)	763
PasI	CCCWGGG	1 cut(s)	952
PciSI	GCTCTTC	1 cut(s)	45
PctI	GAATGC	1 cut(s)	801
PdmI	GAANNNNTTC	1 cut(s)	510
PinAI	ACCGGT	1 cut(s)	993
PkrI	GCNGC	3 cut(s)	425, 900, 903
PleI	GAGTC	2 cut(s)	301, 323
PpsI	GAGTC	2 cut(s)	301, 323
PpuMI	RGGWCCY	1 cut(s)	447
PshAI	GACNNNNGTC	2 cut(s)	311, 762
PsiI	TTATAA	1 cut(s)	594
Psp5II	RGGWCCY	1 cut(s)	447
Psp6I	CCWGG	4 cut(s)	910, 951, 977, 1019
PspEI	GGTNACC	1 cut(s)	1023
PspGI	CCWGG	4 cut(s)	910, 951, 977, 1019
PspN4I	GGNNCC	1 cut(s)	153
PspPI	GGNCC	3 cut(s)	207, 447, 532
PspPPI	RGGWCCY	1 cut(s)	447
PsuI	RGATCY	1 cut(s)	508
RsaI	GTAC	3 cut(s)	461, 540, 571
RsaNI	GTAC	3 cut(s)	460, 539, 570
RseI	CAYNNNNRTG	1 cut(s)	1068
SapI	GCTCTTC	1 cut(s)	45
SaqAI	TTAA	2 cut(s)	675, 852
SatI	GCNGC	3 cut(s)	424, 899, 902
Sau3AI	GATC	4 cut(s)	508, 576, 610, 742
Sau96I	GGNCC	3 cut(s)	207, 447, 532
ScaI	AGTACT	1 cut(s)	540
SchI	GAGTC	2 cut(s)	301, 323
ScrFI	CCNGG	5 cut(s)	391, 912, 953, 979, 1021
SduI	GDGCHC	2 cut(s)	179, 236
SfaNI	GCATC	1 cut(s)	119
SgrAI	CRCCGGYG	1 cut(s)	993
SinI	GGWCC	3 cut(s)	207, 447, 532
SmiMI	CAYNNNNRTG	1 cut(s)	1068
Sse9I	AATT	6 cut(s)	80, 273, 341, 853, 939, 1006
SsiI	CCGC	1 cut(s)	141
SspMI	CTAG	5 cut(s)	363, 419, 638, 749, 1076
StyD4I	CCNGG	5 cut(s)	389, 910, 951, 977, 1019
TaaI	ACNGT	2 cut(s)	680, 785
TaiI	ACGT	1 cut(s)	878
TaqI	TCGA	1 cut(s)	745
TaqII	GACCGA	1 cut(s)	549
TasI	AATT	6 cut(s)	80, 273, 341, 853, 939, 1006
TatI	WGTACW	1 cut(s)	538
Tru1I	TTAA	2 cut(s)	675, 852
Tru9I	TTAA	2 cut(s)	675, 852
TscAI	CASTG	1 cut(s)	477
TseFI	GTSAC	3 cut(s)	820, 862, 1023
TseI	GCWGC	3 cut(s)	423, 898, 901
Tsp45I	GTSAC	3 cut(s)	820, 862, 1023
TspDTI	ATGAA	4 cut(s)	455, 519, 843, 1083
TspGWI	ACGGA	3 cut(s)	220, 795, 839
TspRI	CASTG	1 cut(s)	477
VpaK11BI	GGWCC	3 cut(s)	207, 447, 532
XapI	RAATTY	2 cut(s)	939, 1006
XceI	RCATGY	1 cut(s)	763
XcmI	CCANNNNNNNNNTGG	1 cut(s)	217
XmnI	GAANNNNTTC	1 cut(s)	510
XspI	CTAG	5 cut(s)	363, 419, 638, 749, 1076
ZrmI	AGTACT	1 cut(s)	540

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.