Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0012441

Physical Location & Seq

Genomic Coordinates Reverse (-)

65367369 .. 65371971

Gene Structure 4603 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020467

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGCTTCTCCAAACCCAGTCCCTCACTCCCCATTTGACTCTTCTCCCACTCCCTCCTTCAAAACCCATTTCCAAAACCCAATTCTTCAACCCGAACCCACTTCGCAGAACCCACTCCCCACCTCCAAGATGCTCGCTTTCCGCCGTTTCGGAGCCGACCCAGTTGAAAAAACCGAGCACCAAGCCGTTTCCGGCCGAGGTTTCACGGACCATTCTGGAGTTGGTCTCTGTGGGCACGCTTTCCACTTTGACCCAACAAGGTTGGCCTTTGGGAATTGGGGTTCGCTTTGCTGTTGACCCTGAAGGGACTCCAGTCTTGTGCTTGAATGACTCCAATAGACAATTCTCTATTGACAGGAGGTCTAGTCTCCATGTTCAGTTAGAGCAATCCGGGTTGAGGACGCCTCAGTGCACCATATTAGGCAGCATTGACAAACCAGAAGACAGGACGTTTTTGAAGTACCTTCATTCATTGTGGAGAAAAAGGTTTGAAGAAGAAGTTGATGAAGATCTTCTATATGTTGTTGATGTGGACCGAGTACTTCAGATGGAGGACTTTAGAGAGGTTGGTACATGGATCACATCTTCAGATTATAAAAATGCTCAACCTGATCCTCTCCGAGACTTTTCAGAAAAGCTAGTGCATGATATAAACACCAACAATATTGAAGATATTAACCGTTTTTGCAACATTTATGCTGATTTGGACTTTCAGGTATCTGAAGCAAAGTTGATATGGATTGATCGACTAGGGCTTGACATGCGTCTTTGGTCTCCTCAGAATGGTATTTTTGAGGTTCGAATTCCCTTCCCGAGAGATGTGACGGATGAAAAAGGAGCAAAGTCAATGTTTAATTGTATGGCGCAATTAGCATGGGAGGTCGAAAAGAATTTCCATGCCCCAGATTTTGAGAAAGTGAAACAATTGCAGCTTGAAGGCTGCATATATTCAAGTGGGAGGGGGCCAAGACTTTGCTTCTTTGGGAAGGAAATGTTTACACAGTTTGCCATCAAGACCAACACCGATAAAACTACGAGGAAGATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009767 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0015979 GO:0018130 GO:0019222 GO:0019438 GO:0019684 GO:0022900 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0033013 GO:0033014 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043495 GO:0044237 GO:0044249 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051193 GO:0051194 GO:0055114 GO:0065007 GO:0070453 GO:0070455 GO:0071704 GO:1901360 GO:1901362 GO:1901401 GO:1901403 GO:1901463 GO:1901465 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2470

Protein Analysis

349

Amino Acids

39.95

Weight (kDa)

6.35

Isoelectric Point (pI)

41.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF2470	PF10615	212 - 283	1.2e-08	Domain of unknown function (DUF2470)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012441)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21200
fragaria_vesca	FvH4_6g37280
malus_domestica	MD09G1158800.v1.1
prunus_persica	Prupe.3G167000_v2.0.a1 Prupe.3G167000_v2.0.a1 Prupe.3G167000_v2.0.a1 Prupe.3G167000_v2.0.a1
pyrus_communis	pycom09g07740
rosa_chinensis	RchiOBHm_Chr2g0150111
rosa_laevigata	RLG00000020467
rosa_multiflora	Rmu_sc0005609.1_g000007 Rmu_sc0009445.1_g000004
rosa_roxburghii	Rroxscaffold_2G00097440
rosa_rugosa	Rorug02G0419200
rosa_samantha	Rh2AG477800 Rh2BG490400 Rh2CG464000 Rh2DG499200
rosa_wichuraiana	Rw2G039000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	594
AciI	CCGC	1 cut(s)	141
AclWI	GGATC	2 cut(s)	584, 605
AcoI	YGGCCR	1 cut(s)	192
AcsI	RAATTY	2 cut(s)	801, 889
AcuI	CTGAAG	4 cut(s)	321, 527, 570, 741
AcyI	GRCGYC	1 cut(s)	401
AfaI	GTAC	3 cut(s)	461, 540, 571
AfiI	CCNNNNNNNGG	2 cut(s)	396, 782
AgsI	TTSAA	9 cut(s)	60, 88, 166, 325, 457, 491, 668, 935, 951
AhdI	GACNNNNNGTC	1 cut(s)	358
AjuI	GAANNNNNNNTTGG	4 cut(s)	65, 97, 326, 358
AloI	GAACNNNNNNTCC	2 cut(s)	264, 296
AluBI	AGCT	2 cut(s)	637, 931
AluI	AGCT	2 cut(s)	637, 931
Alw21I	GWGCWC	2 cut(s)	179, 413
Alw26I	GTCTC	4 cut(s)	229, 371, 615, 777
Alw44I	GTGCAC	1 cut(s)	409
AlwI	GGATC	2 cut(s)	584, 605
Ama87I	CYCGRG	1 cut(s)	811
AoxI	GGCC	3 cut(s)	192, 263, 962
ApaLI	GTGCAC	1 cut(s)	409
ApeKI	GCWGC	3 cut(s)	423, 928, 939
ApoI	RAATTY	2 cut(s)	801, 889
Asp700I	GAANNNNTTC	1 cut(s)	510
AspLEI	GCGC	1 cut(s)	865
AspS9I	GGNCC	3 cut(s)	207, 532, 962
AsuC2I	CCSGG	1 cut(s)	391
AsuII	TTCGAA	1 cut(s)	799
AvaI	CYCGRG	1 cut(s)	811
AvaII	GGWCC	2 cut(s)	207, 532
BaeGI	GKGCMC	2 cut(s)	236, 413
BbsI	GAAGAC	1 cut(s)	447
Bbv12I	GWGCWC	2 cut(s)	179, 413
BbvI	GCAGC	3 cut(s)	435, 926, 940
BccI	CCATC	2 cut(s)	541, 1016
BceAI	ACGGC	2 cut(s)	128, 169
BcnI	CCSGG	1 cut(s)	391
BcoDI	GTCTC	4 cut(s)	229, 371, 615, 777
BfaI	CTAG	3 cut(s)	363, 638, 749
BglII	AGATCT	2 cut(s)	508, 1041
BisI	GCNGC	3 cut(s)	424, 929, 940
BlsI	GCNGC	3 cut(s)	425, 930, 941
BmcAI	AGTACT	1 cut(s)	540
Bme1390I	CCNGG	1 cut(s)	391
Bme18I	GGWCC	2 cut(s)	207, 532
BmeRI	GACNNNNNGTC	1 cut(s)	358
BmeT110I	CYCGRG	1 cut(s)	811
BmgT120I	GGNCC	3 cut(s)	207, 532, 962
BmiI	GGNNCC	2 cut(s)	153, 963
BmrFI	CCNGG	1 cut(s)	391
BmrI	ACTGGG	2 cut(s)	10, 154
BmsI	GCATC	1 cut(s)	119
BmuI	ACTGGG	2 cut(s)	10, 154
BoxI	GACNNNNGTC	2 cut(s)	311, 762
BpiI	GAAGAC	1 cut(s)	447
BplI	GAGNNNNNCTC	4 cut(s)	209, 241, 388, 420
BpmI	CTGGAG	2 cut(s)	236, 294
Bpu14I	TTCGAA	1 cut(s)	799
BpuMI	CCSGG	1 cut(s)	391
BsaBI	GATNNNNATC	1 cut(s)	507
BsaHI	GRCGYC	1 cut(s)	401
BsaI	GGTCTC	2 cut(s)	229, 777
BsaJI	CCNNGG	1 cut(s)	195
BsaXI	ACNNNNNCTCC	2 cut(s)	349, 379
Bsc4I	CCNNNNNNNGG	2 cut(s)	396, 782
Bse1I	ACTGG	3 cut(s)	16, 160, 311
Bse8I	GATNNNNATC	1 cut(s)	507
BseDI	CCNNGG	1 cut(s)	195
BseGI	GGATG	1 cut(s)	832
BseJI	GATNNNNATC	1 cut(s)	507
BseLI	CCNNNNNNNGG	2 cut(s)	396, 782
BseMII	CTCAG	2 cut(s)	419, 791
BseNI	ACTGG	3 cut(s)	16, 160, 311
BseRI	GAGGAG	1 cut(s)	765
BseSI	GKGCMC	2 cut(s)	236, 413
BseX3I	CGGCCG	1 cut(s)	192
BseXI	GCAGC	3 cut(s)	435, 926, 940
Bsh1285I	CGRYCG	1 cut(s)	195
BshFI	GGCC	3 cut(s)	194, 265, 964
BsiEI	CGRYCG	1 cut(s)	195
BsiHKAI	GWGCWC	2 cut(s)	179, 413
BsiHKCI	CYCGRG	1 cut(s)	811
BsiSI	CCGG	2 cut(s)	191, 390
BslFI	GGGAC	2 cut(s)	4, 319
BslI	CCNNNNNNNGG	2 cut(s)	396, 782
BsmAI	GTCTC	4 cut(s)	229, 371, 615, 777
BsmFI	GGGAC	2 cut(s)	4, 319
BsnI	GGCC	3 cut(s)	194, 265, 964
Bso31I	GGTCTC	2 cut(s)	229, 777
BsoBI	CYCGRG	1 cut(s)	811
Bsp119I	TTCGAA	1 cut(s)	799
Bsp1286I	GDGCHC	3 cut(s)	179, 236, 413
Bsp143I	GATC	5 cut(s)	508, 576, 610, 742, 1041
BspACI	CCGC	1 cut(s)	141
BspANI	GGCC	3 cut(s)	194, 265, 964
BspCNI	CTCAG	2 cut(s)	418, 790
BspLI	GGNNCC	2 cut(s)	153, 963
BspPI	GGATC	2 cut(s)	584, 605
BspT104I	TTCGAA	1 cut(s)	799
BspTNI	GGTCTC	2 cut(s)	229, 777
BsrI	ACTGG	3 cut(s)	16, 160, 311
BssECI	CCNNGG	1 cut(s)	195
BssMI	GATC	5 cut(s)	508, 576, 610, 742, 1041
BssNI	GRCGYC	1 cut(s)	401
Bst4CI	ACNGT	2 cut(s)	680, 1002
Bst6I	CTCTTC	1 cut(s)	45
BstACI	GRCGYC	1 cut(s)	401
BstBI	TTCGAA	1 cut(s)	799
BstC8I	GCNNGC	2 cut(s)	134, 236
BstDEI	CTNAG	2 cut(s)	405, 777
BstF5I	GGATG	1 cut(s)	832
BstHHI	GCGC	1 cut(s)	865
BstKTI	GATC	5 cut(s)	511, 579, 613, 745, 1044
BstMAI	GTCTC	4 cut(s)	229, 371, 615, 777
BstMBI	GATC	5 cut(s)	508, 576, 610, 742, 1041
BstMCI	CGRYCG	1 cut(s)	195
BstMWI	GCNNNNNNNGC	2 cut(s)	760, 869
BstNSI	RCATGY	1 cut(s)	763
BstPAI	GACNNNNGTC	2 cut(s)	311, 762
BstSCI	CCNGG	1 cut(s)	389
BstSLI	GKGCMC	2 cut(s)	236, 413
BstV1I	GCAGC	3 cut(s)	435, 926, 940
BstV2I	GAAGAC	1 cut(s)	447
BstX2I	RGATCY	2 cut(s)	508, 1041
BstYI	RGATCY	2 cut(s)	508, 1041
BstZI	CGGCCG	1 cut(s)	192
BsuRI	GGCC	3 cut(s)	194, 265, 964
BtsCI	GGATG	1 cut(s)	832
BtsIMutI	CAGTG	1 cut(s)	413
Cac8I	GCNNGC	2 cut(s)	134, 236
CfoI	GCGC	1 cut(s)	865
Cfr13I	GGNCC	3 cut(s)	207, 532, 962
CseI	GACGC	2 cut(s)	409, 752
Csp6I	GTAC	3 cut(s)	460, 539, 570
CviAII	CATG	6 cut(s)	371, 573, 644, 760, 873, 896
CviJI	RGCY	9 cut(s)	154, 184, 194, 265, 637, 754, 931, 939, 964
CviKI_1	RGCY	9 cut(s)	154, 184, 194, 265, 637, 754, 931, 939, 964
CviQI	GTAC	3 cut(s)	460, 539, 570
DdeI	CTNAG	2 cut(s)	405, 777
DpnI	GATC	5 cut(s)	510, 578, 612, 744, 1043
DpnII	GATC	5 cut(s)	508, 576, 610, 742, 1041
DriI	GACNNNNNGTC	1 cut(s)	358
EaeI	YGGCCR	1 cut(s)	192
EagI	CGGCCG	1 cut(s)	192
Eam1104I	CTCTTC	1 cut(s)	45
Eam1105I	GACNNNNNGTC	1 cut(s)	358
EarI	CTCTTC	1 cut(s)	45
EciI	GGCGGA	1 cut(s)	130
EclXI	CGGCCG	1 cut(s)	192
Eco31I	GGTCTC	2 cut(s)	229, 777
Eco47I	GGWCC	2 cut(s)	207, 532
Eco52I	CGGCCG	1 cut(s)	192
Eco57I	CTGAAG	4 cut(s)	321, 527, 570, 741
Eco88I	CYCGRG	1 cut(s)	811
EcoRI	GAATTC	1 cut(s)	801
FaeI	CATG	6 cut(s)	374, 576, 647, 763, 876, 899
FaqI	GGGAC	2 cut(s)	4, 319
FatI	CATG	6 cut(s)	370, 572, 643, 759, 872, 895
Fnu4HI	GCNGC	3 cut(s)	424, 929, 940
FokI	GGATG	1 cut(s)	839
Fsp4HI	GCNGC	3 cut(s)	424, 929, 940
FspBI	CTAG	3 cut(s)	363, 638, 749
GlaI	GCGC	1 cut(s)	864
GluI	GCNGC	3 cut(s)	424, 929, 940
GsuI	CTGGAG	2 cut(s)	236, 294
HaeIII	GGCC	3 cut(s)	194, 265, 964
HapII	CCGG	2 cut(s)	191, 390
HgaI	GACGC	2 cut(s)	409, 752
HhaI	GCGC	1 cut(s)	865
Hin1I	GRCGYC	1 cut(s)	401
Hin1II	CATG	6 cut(s)	374, 576, 647, 763, 876, 899
Hin6I	GCGC	1 cut(s)	863
HinP1I	GCGC	1 cut(s)	863
HincII	GTYRAC	1 cut(s)	295
HindII	GTYRAC	1 cut(s)	295
HinfI	GANTC	3 cut(s)	37, 307, 329
HpaII	CCGG	2 cut(s)	191, 390
Hpy166II	GTNNAC	4 cut(s)	295, 411, 532, 996
Hpy188I	TCNGA	8 cut(s)	151, 546, 589, 620, 631, 721, 780, 1046
Hpy188III	TCNNGA	3 cut(s)	215, 811, 1012
Hpy8I	GTNNAC	4 cut(s)	295, 411, 532, 996
HpyAV	CCTTC	6 cut(s)	66, 296, 473, 817, 929, 979
HpyCH4III	ACNGT	2 cut(s)	680, 1002
HpyCH4IV	ACGT	1 cut(s)	449
HpyCH4V	TGCA	5 cut(s)	411, 643, 687, 928, 942
HpyF10VI	GCNNNNNNNGC	2 cut(s)	760, 869
HpyF3I	CTNAG	2 cut(s)	405, 777
HpySE526I	ACGT	1 cut(s)	449
Hsp92I	GRCGYC	1 cut(s)	401
Hsp92II	CATG	6 cut(s)	374, 576, 647, 763, 876, 899
HspAI	GCGC	1 cut(s)	863
Kzo9I	GATC	5 cut(s)	508, 576, 610, 742, 1041
LmnI	GCTCC	2 cut(s)	151, 836
Lsp1109I	GCAGC	3 cut(s)	435, 926, 940
LweI	GCATC	1 cut(s)	119
MaeI	CTAG	3 cut(s)	363, 638, 749
MaeII	ACGT	1 cut(s)	449
MaeIII	GTNAC	1 cut(s)	820
MalI	GATC	5 cut(s)	510, 578, 612, 744, 1043
MboI	GATC	5 cut(s)	508, 576, 610, 742, 1041
MboII	GAAGA	9 cut(s)	32, 76, 452, 503, 503, 506, 518, 576, 680
MfeI	CAATTG	1 cut(s)	923
MflI	RGATCY	2 cut(s)	508, 1041
MhlI	GDGCHC	3 cut(s)	179, 236, 413
MluCI	AATT	8 cut(s)	80, 273, 341, 801, 853, 866, 889, 923
MlyI	GAGTC	3 cut(s)	31, 301, 323
MroXI	GAANNNNTTC	1 cut(s)	510
MseI	TTAA	2 cut(s)	675, 852
MspI	CCGG	2 cut(s)	191, 390
MspR9I	CCNGG	1 cut(s)	391
MunI	CAATTG	1 cut(s)	923
MwoI	GCNNNNNNNGC	2 cut(s)	760, 869
NciI	CCSGG	1 cut(s)	391
NdeII	GATC	5 cut(s)	508, 576, 610, 742, 1041
NlaIII	CATG	6 cut(s)	374, 576, 647, 763, 876, 899
NlaIV	GGNNCC	2 cut(s)	153, 963
NmeAIII	GCCGAG	1 cut(s)	220
NmuCI	GTSAC	1 cut(s)	820
NspI	RCATGY	1 cut(s)	763
NspV	TTCGAA	1 cut(s)	799
PdmI	GAANNNNTTC	1 cut(s)	510
PkrI	GCNGC	3 cut(s)	425, 930, 941
PleI	GAGTC	3 cut(s)	31, 301, 323
PpsI	GAGTC	3 cut(s)	31, 301, 323
PshAI	GACNNNNGTC	2 cut(s)	311, 762
PsiI	TTATAA	1 cut(s)	594
PspN4I	GGNNCC	2 cut(s)	153, 963
PspPI	GGNCC	3 cut(s)	207, 532, 962
PsuI	RGATCY	2 cut(s)	508, 1041
RsaI	GTAC	3 cut(s)	461, 540, 571
RsaNI	GTAC	3 cut(s)	460, 539, 570
SaqAI	TTAA	2 cut(s)	675, 852
SatI	GCNGC	3 cut(s)	424, 929, 940
Sau3AI	GATC	5 cut(s)	508, 576, 610, 742, 1041
Sau96I	GGNCC	3 cut(s)	207, 532, 962
ScaI	AGTACT	1 cut(s)	540
SchI	GAGTC	3 cut(s)	31, 301, 323
ScrFI	CCNGG	1 cut(s)	391
SduI	GDGCHC	3 cut(s)	179, 236, 413
SfaNI	GCATC	1 cut(s)	119
SfuI	TTCGAA	1 cut(s)	799
SinI	GGWCC	2 cut(s)	207, 532
Sse9I	AATT	8 cut(s)	80, 273, 341, 801, 853, 866, 889, 923
SsiI	CCGC	1 cut(s)	141
SspI	AATATT	1 cut(s)	664
SspMI	CTAG	3 cut(s)	363, 638, 749
StyD4I	CCNGG	1 cut(s)	389
TaaI	ACNGT	2 cut(s)	680, 1002
TaiI	ACGT	1 cut(s)	452
TaqI	TCGA	3 cut(s)	745, 799, 882
TaqII	GACCGA	1 cut(s)	549
TasI	AATT	8 cut(s)	80, 273, 341, 801, 853, 866, 889, 923
TatI	WGTACW	1 cut(s)	538
Tru1I	TTAA	2 cut(s)	675, 852
Tru9I	TTAA	2 cut(s)	675, 852
TscAI	CASTG	1 cut(s)	413
TseFI	GTSAC	1 cut(s)	820
TseI	GCWGC	3 cut(s)	423, 928, 939
Tsp45I	GTSAC	1 cut(s)	820
TspDTI	ATGAA	4 cut(s)	455, 459, 519, 843
TspGWI	ACGGA	2 cut(s)	220, 839
TspRI	CASTG	1 cut(s)	413
VneI	GTGCAC	1 cut(s)	409
VpaK11BI	GGWCC	2 cut(s)	207, 532
XapI	RAATTY	2 cut(s)	801, 889
XceI	RCATGY	1 cut(s)	763
XcmI	CCANNNNNNNNNTGG	1 cut(s)	217
XmnI	GAANNNNTTC	1 cut(s)	510
XspI	CTAG	3 cut(s)	363, 638, 749
ZrmI	AGTACT	1 cut(s)	540

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.