Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005775

Physical Location & Seq

Genomic Coordinates Forward (+)

8044410 .. 8048263

Gene Structure 3854 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G22760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1830 bp

ATGGATACACCGGAAAAGAGTGAAACCCAGATCGGTACTCCAGTTTCTAAACTCAAAGTCGAGGATTCACCAGTGTTTAGTTACATATGCAATCTCTCACCAATTAAGACTATCAAACCAATTCCAATCACTTGTCCTTTAAGCTCTCTCAATTACGCATCTCCACCTTCTGTTTTCACTTCTCCTCACGCGGTTTCTCATAAAGAGTCTCGTTTCAGAAGTCAAAAAGATGTGTCTGCTTCTAAAGAAGTTGGAGAAGAAGAAGCTTTAGTCGGTAGCGAACCGGAACAAAGCTACAAGAATGACTGCAATACTCCTAGAGTTACCAATGATGTGAAAGACAATGGTTGTGGGAAGGATTTGCAGGTGATGATGGACAATGTCAAGAAGAAAAGTGATACTCCGGATTGGGAAACTTTGATTGCTGCTACAACAGAACTGATTTATGGCTCACCGAGAGAGTCAGAGGCTTTTAGTTGCTTGTTGAAGAAAACTTCAAACTCTGAAGCACGTCTACGTGGTAGTATAACTGCAACATCGGTGGCTGTTACGAATACCGATGTAGTCAACAATGAATCTGAATCTGTTGATGCTCTTTCGATATTGCACCGTGGTGTGAGAAGACGGTGTTTAGACTTTGAGGTTAAGGGGAATAATCAGCAAACATTAGGAGAATCTTCATCTAGTTGTGTAGTACCTAGCATTGGTCTGCATCTTAACACCATTGCAATGTCCTCTAAGGACAAGAATGTTGCTAATGAGTATTCATTTTCCGGTAACATAAAAGTCGGTGTGCAAAGTTCTCTGACTCCGGTGCTTCATTCGCAGCACGACATCGTGAGAGAAAATGAAAGCGGGAAAGATTCAGGACAAATTATAGAAGTGGTTCCAAAGTCTTTAGCTTCAGTAGACTTGACTCCAATAAGCCCCAAGAAGAAAAGGCGTAAGTCCGAACAATCAGGAGAAGGCGACTCGTCATGTAAACGGTGCAACTGCAAAAAATCCAAGTGTTTGAAGCTTTACTGTGAATGCTTTGCTGCTGGATTTTATTGCATAGAGCCATGTTCATGTATAAATTGCTTCAACAAACCTATCCATAAAGATGTTGTCCTGGCTACTCGCAAACAGATTGAATCCCGCAATCCACTTGCATTTGCTCCTAAAGTCATCAGAAACTCAGATTCCATCATTGAAGTTGGTGAGGATGCAAGTAAAACTCCAGCTTCAGCGCGACACAAACGAGGCTGTAACTGCAAGAAATCAAACTGTCTGAAGAAATACTGTGAATGCTATCAGGGCGGAGTTGGTTGTTCTATAAACTGTAGATGTGAAGGATGTAAAAATGCATTTGGCAGAAAAGATGGGTCTTTGTTCGAACAAGATGAGGAGAATGAAACATCTGGCACACCCGGAACAAAGAAAACACAACAGAATGTCGAGTTGTTCAAACCTGCAGCTCCACCTTCAACACCAATTCCATTTAGACAACCACTGGCGCAACTTCCAATCTCATCCAACAACAGACTGCTACCTCCACAGTCTCATTTTCATCATGGAGCTATTGGATCATCTTCCTCAGGGATATACAACATCAGAAAACCAGACATGAGTTTGTTGTCTCATTCAAGAATCGAGACAATCACAGAGGATATTGATGATATGTCTGAGAATCTAATCCATTCTCCAATAACTACTCTATCTCCCAACAGCAAAAGGGTTTCGTTGTCTCATCTTGATTCACCAGAGTCGACTCCATGGAGAAGAAATGGTGGGGGGAGGAATCTGATACGTTCGTTCCCAACGTTTCCTTCTCTCACTCCACACCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0009934 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048444 GO:0048509 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051252 GO:0051302 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04218 map04218

Pfam Domains

Protein Families

TCR

Protein Analysis

609

Amino Acids

66.65

Weight (kDa)

8.5

Isoelectric Point (pI)

60.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TCR	PF03638	328 - 363	8.4e-11	Tesmin/TSO1-like CXC domain, cysteine-rich domain
TCR	PF03638	413 - 449	1e-11	Tesmin/TSO1-like CXC domain, cysteine-rich domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005775)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22760 AT3G22760 AT3G22780 AT4G14770 AT4G14770 AT4G14770
fragaria_vesca	FvH4_4g00820 FvH4_4g00820 FvH4_4g00820
malus_domestica	MD13G1197800.v1.1 MD16G1197800.v1.1
prunus_persica	Prupe.1G019100_v2.0.a1 Prupe.1G019100_v2.0.a1
pyrus_communis	pycom13g17130 pycom13g17140 pycom16g16660
rosa_chinensis	RchiOBHm_Chr4g0387371
rosa_laevigata	RLG00000010126
rosa_multiflora	Rmu_sc0000013.1_g000028
rosa_roxburghii	Rroxscaffold_5G00334100
rosa_rugosa	Rorug03G0309000 Rorug03G0309000 Rorug03G0309000
rosa_samantha	Rh4AG015700 Rh4BG010500 Rh4CG016700 Rh4DG011800
rosa_wichuraiana	Rw4G000970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	355
Acc36I	ACCTGC	2 cut(s)	355, 1459
AccI	GTMKAC	3 cut(s)	514, 909, 1748
AccII	CGCG	2 cut(s)	191, 1231
AccIII	TCCGGA	1 cut(s)	403
AciI	CCGC	4 cut(s)	191, 855, 1138, 1299
AclI	AACGTT	1 cut(s)	1802
AclWI	GGATC	1 cut(s)	1573
AcuI	CTGAAG	4 cut(s)	525, 888, 1209, 1292
AfaI	GTAC	2 cut(s)	37, 696
AfiI	CCNNNNNNNGG	1 cut(s)	704
AgsI	TTSAA	9 cut(s)	487, 498, 1015, 1084, 1133, 1193, 1447, 1467, 1626
AjiI	CACGTC	1 cut(s)	512
AjnI	CCWGG	1 cut(s)	1110
AjuI	GAANNNNNNNTTGG	2 cut(s)	1792, 1824
AleI	CACNNNNGTG	1 cut(s)	612
AluBI	AGCT	8 cut(s)	144, 266, 294, 902, 1018, 1223, 1457, 1559
AluI	AGCT	8 cut(s)	144, 266, 294, 902, 1018, 1223, 1457, 1559
Alw26I	GTCTC	5 cut(s)	213, 1545, 1623, 1628, 1731
AlwI	GGATC	1 cut(s)	1573
Aor13HI	TCCGGA	1 cut(s)	403
ApeKI	GCWGC	4 cut(s)	425, 826, 1037, 1454
Asp700I	GAANNNNTTC	1 cut(s)	885
AspLEI	GCGC	2 cut(s)	1231, 1498
AsuC2I	CCSGG	1 cut(s)	1410
AsuHPI	GGTGA	6 cut(s)	60, 90, 379, 444, 1211, 1731
AsuII	TTCGAA	1 cut(s)	1374
AxyI	CCTNAGG	1 cut(s)	1576
BaeI	ACNNNNGTAYC	4 cut(s)	27, 60, 1778, 1811
BarI	GAAGNNNNNNTAC	2 cut(s)	498, 530
BbsI	GAAGAC	1 cut(s)	628
BbvI	GCAGC	4 cut(s)	412, 838, 1024, 1466
BccI	CCATC	3 cut(s)	367, 1193, 1355
BciT130I	CCWGG	1 cut(s)	1112
BcnI	CCSGG	1 cut(s)	1410
BcoDI	GTCTC	5 cut(s)	213, 1545, 1623, 1628, 1731
BfaI	CTAG	3 cut(s)	318, 684, 699
BfmI	CTRYAG	2 cut(s)	1321, 1452
BfuAI	ACCTGC	2 cut(s)	355, 1459
BisI	GCNGC	4 cut(s)	426, 827, 1038, 1455
BlsI	GCNGC	4 cut(s)	427, 828, 1039, 1456
Bme1390I	CCNGG	2 cut(s)	1112, 1410
BmgBI	CACGTC	1 cut(s)	512
BmiI	GGNNCC	1 cut(s)	888
BmrFI	CCNGG	2 cut(s)	1112, 1410
BmsI	GCATC	4 cut(s)	167, 580, 721, 1195
BpiI	GAAGAC	1 cut(s)	628
BpmI	CTGGAG	2 cut(s)	24, 1203
Bpu14I	TTCGAA	1 cut(s)	1374
BpuMI	CCSGG	1 cut(s)	1410
BsaAI	YACGTR	1 cut(s)	518
BsaJI	CCNNGG	2 cut(s)	610, 1754
BsaWI	WCCGGW	5 cut(s)	10, 283, 403, 773, 811
BsaXI	ACNNNNNCTCC	2 cut(s)	1684, 1714
Bsc4I	CCNNNNNNNGG	1 cut(s)	704
Bse1I	ACTGG	3 cut(s)	41, 71, 1497
Bse21I	CCTNAGG	1 cut(s)	1576
Bse3DI	GCAATG	2 cut(s)	723, 735
BseAI	TCCGGA	1 cut(s)	403
BseBI	CCWGG	1 cut(s)	1112
BseDI	CCNNGG	2 cut(s)	610, 1754
BseGI	GGATG	3 cut(s)	1210, 1340, 1511
BseLI	CCNNNNNNNGG	1 cut(s)	704
BseMI	GCAATG	2 cut(s)	723, 735
BseMII	CTCAG	3 cut(s)	1191, 1590, 1656
BseNI	ACTGG	3 cut(s)	41, 71, 1497
BseRI	GAGGAG	2 cut(s)	174, 1400
BseXI	GCAGC	4 cut(s)	412, 838, 1024, 1466
Bsh1236I	CGCG	2 cut(s)	191, 1231
BsiSI	CCGG	6 cut(s)	11, 284, 404, 774, 812, 1410
BslI	CCNNNNNNNGG	1 cut(s)	704
BsmAI	GTCTC	5 cut(s)	213, 1545, 1623, 1628, 1731
BsmI	GAATGC	2 cut(s)	1034, 1292
Bsp119I	TTCGAA	1 cut(s)	1374
Bsp13I	TCCGGA	1 cut(s)	403
Bsp143I	GATC	2 cut(s)	30, 1565
Bsp19I	CCATGG	1 cut(s)	1754
BspACI	CCGC	4 cut(s)	191, 855, 1138, 1299
BspCNI	CTCAG	3 cut(s)	1190, 1589, 1657
BspEI	TCCGGA	1 cut(s)	403
BspFNI	CGCG	2 cut(s)	191, 1231
BspLI	GGNNCC	1 cut(s)	888
BspMAI	CTGCAG	1 cut(s)	1456
BspMI	ACCTGC	2 cut(s)	355, 1459
BspPI	GGATC	1 cut(s)	1573
BspT104I	TTCGAA	1 cut(s)	1374
BsrDI	GCAATG	2 cut(s)	723, 735
BsrI	ACTGG	3 cut(s)	41, 71, 1497
BssECI	CCNNGG	2 cut(s)	610, 1754
BssMI	GATC	2 cut(s)	30, 1565
BssT1I	CCWWGG	1 cut(s)	1754
Bst2UI	CCWGG	1 cut(s)	1112
Bst4CI	ACNGT	8 cut(s)	611, 627, 987, 1025, 1268, 1283, 1322, 1539
BstBAI	YACGTR	1 cut(s)	518
BstBI	TTCGAA	1 cut(s)	1374
BstDEI	CTNAG	4 cut(s)	738, 1177, 1576, 1665
BstDSI	CCRYGG	2 cut(s)	610, 1754
BstF5I	GGATG	3 cut(s)	1210, 1340, 1511
BstFNI	CGCG	2 cut(s)	191, 1231
BstHHI	GCGC	2 cut(s)	1231, 1498
BstKTI	GATC	2 cut(s)	33, 1568
BstMAI	GTCTC	5 cut(s)	213, 1545, 1623, 1628, 1731
BstMBI	GATC	2 cut(s)	30, 1565
BstMWI	GCNNNNNNNGC	3 cut(s)	823, 1251, 1296
BstNI	CCWGG	1 cut(s)	1112
BstSCI	CCNGG	2 cut(s)	1110, 1408
BstSFI	CTRYAG	2 cut(s)	1321, 1452
BstUI	CGCG	2 cut(s)	191, 1231
BstV1I	GCAGC	4 cut(s)	412, 838, 1024, 1466
BstV2I	GAAGAC	1 cut(s)	628
Bsu36I	CCTNAGG	1 cut(s)	1576
BtgI	CCRYGG	2 cut(s)	610, 1754
BtrI	CACGTC	1 cut(s)	512
BtsCI	GGATG	3 cut(s)	1210, 1340, 1511
BtsIMutI	CAGTG	2 cut(s)	78, 1490
BveI	ACCTGC	2 cut(s)	355, 1459
CfoI	GCGC	2 cut(s)	1231, 1498
Csp6I	GTAC	2 cut(s)	36, 695
CspCI	CAANNNNNGTGG	4 cut(s)	331, 366, 522, 557
CviAII	CATG	6 cut(s)	978, 1062, 1068, 1553, 1606, 1755
CviQI	GTAC	2 cut(s)	36, 695
DdeI	CTNAG	4 cut(s)	738, 1177, 1576, 1665
DpnI	GATC	2 cut(s)	32, 1567
DpnII	GATC	2 cut(s)	30, 1565
EciI	GGCGGA	1 cut(s)	1314
Eco130I	CCWWGG	1 cut(s)	1754
Eco57I	CTGAAG	4 cut(s)	525, 888, 1209, 1292
Eco81I	CCTNAGG	1 cut(s)	1576
EcoRII	CCWGG	1 cut(s)	1110
EcoT14I	CCWWGG	1 cut(s)	1754
EcoT22I	ATGCAT	1 cut(s)	1348
ErhI	CCWWGG	1 cut(s)	1754
FaeI	CATG	6 cut(s)	981, 1065, 1071, 1556, 1609, 1758
FatI	CATG	6 cut(s)	977, 1061, 1067, 1552, 1605, 1754
FauI	CCCGC	2 cut(s)	848, 1145
FauNDI	CATATG	1 cut(s)	86
FblI	GTMKAC	3 cut(s)	514, 909, 1748
Fnu4HI	GCNGC	4 cut(s)	426, 827, 1038, 1455
FokI	GGATG	3 cut(s)	1217, 1347, 1498
Fsp4HI	GCNGC	4 cut(s)	426, 827, 1038, 1455
FspBI	CTAG	3 cut(s)	318, 684, 699
GlaI	GCGC	2 cut(s)	1230, 1497
GluI	GCNGC	4 cut(s)	426, 827, 1038, 1455
GsuI	CTGGAG	2 cut(s)	24, 1203
HapII	CCGG	6 cut(s)	11, 284, 404, 774, 812, 1410
HhaI	GCGC	2 cut(s)	1231, 1498
Hin1II	CATG	6 cut(s)	981, 1065, 1071, 1556, 1609, 1758
Hin6I	GCGC	2 cut(s)	1229, 1496
HinP1I	GCGC	2 cut(s)	1229, 1496
HincII	GTYRAC	2 cut(s)	568, 1749
HindII	GTYRAC	2 cut(s)	568, 1749
HindIII	AAGCTT	2 cut(s)	264, 1016
HpaII	CCGG	6 cut(s)	11, 284, 404, 774, 812, 1410
HphI	GGTGA	6 cut(s)	60, 90, 379, 444, 1211, 1731
Hpy166II	GTNNAC	5 cut(s)	515, 568, 910, 983, 1749
Hpy188III	TCNNGA	8 cut(s)	385, 404, 838, 867, 960, 1626, 1633, 1733
Hpy8I	GTNNAC	5 cut(s)	515, 568, 910, 983, 1749
HpyAV	CCTTC	6 cut(s)	177, 349, 959, 1325, 1473, 1818
HpyCH4III	ACNGT	8 cut(s)	611, 627, 987, 1025, 1268, 1283, 1322, 1539
HpyCH4IV	ACGT	4 cut(s)	511, 517, 1789, 1802
HpyF10VI	GCNNNNNNNGC	3 cut(s)	823, 1251, 1296
HpyF3I	CTNAG	4 cut(s)	738, 1177, 1576, 1665
HpySE526I	ACGT	4 cut(s)	511, 517, 1789, 1802
Hsp92II	CATG	6 cut(s)	981, 1065, 1071, 1556, 1609, 1758
HspAI	GCGC	2 cut(s)	1229, 1496
Kpn2I	TCCGGA	1 cut(s)	403
Kzo9I	GATC	2 cut(s)	30, 1565
LmnI	GCTCC	3 cut(s)	1162, 1462, 1556
Lsp1109I	GCAGC	4 cut(s)	412, 838, 1024, 1466
LweI	GCATC	4 cut(s)	167, 580, 721, 1195
MaeI	CTAG	3 cut(s)	318, 684, 699
MaeII	ACGT	4 cut(s)	511, 517, 1789, 1802
MaeIII	GTNAC	5 cut(s)	80, 322, 547, 776, 1247
MalI	GATC	2 cut(s)	32, 1567
MboI	GATC	2 cut(s)	30, 1565
MluCI	AATT	6 cut(s)	102, 120, 151, 873, 1075, 1473
MlyI	GAGTC	7 cut(s)	215, 470, 802, 910, 965, 1744, 1754
MmeI	TCCRAC	2 cut(s)	232, 1539
Mph1103I	ATGCAT	1 cut(s)	1348
MroI	TCCGGA	1 cut(s)	403
MroXI	GAANNNNTTC	1 cut(s)	885
MseI	TTAA	5 cut(s)	105, 140, 645, 717, 1828
MslI	CAYNNNNRTG	4 cut(s)	612, 728, 1066, 1101
MspI	CCGG	6 cut(s)	11, 284, 404, 774, 812, 1410
MspR9I	CCNGG	2 cut(s)	1112, 1410
Mva1269I	GAATGC	2 cut(s)	1034, 1292
MvaI	CCWGG	1 cut(s)	1112
MvnI	CGCG	2 cut(s)	191, 1231
MwoI	GCNNNNNNNGC	3 cut(s)	823, 1251, 1296
NciI	CCSGG	1 cut(s)	1410
NcoI	CCATGG	1 cut(s)	1754
NdeI	CATATG	1 cut(s)	86
NdeII	GATC	2 cut(s)	30, 1565
NlaIII	CATG	6 cut(s)	981, 1065, 1071, 1556, 1609, 1758
NlaIV	GGNNCC	1 cut(s)	888
NsiI	ATGCAT	1 cut(s)	1348
NspV	TTCGAA	1 cut(s)	1374
OliI	CACNNNNGTG	1 cut(s)	612
PaqCI	CACCTGC	1 cut(s)	355
PcsI	WCGNNNNNNNCGW	1 cut(s)	1799
PctI	GAATGC	2 cut(s)	1034, 1292
PdmI	GAANNNNTTC	1 cut(s)	885
PflFI	GACNNNGTC	1 cut(s)	380
PkrI	GCNGC	4 cut(s)	427, 828, 1039, 1456
PleI	GAGTC	7 cut(s)	214, 469, 802, 910, 965, 1744, 1753
PpsI	GAGTC	7 cut(s)	214, 469, 802, 910, 965, 1744, 1753
Ppu21I	YACGTR	1 cut(s)	518
Psp1406I	AACGTT	1 cut(s)	1802
Psp6I	CCWGG	1 cut(s)	1110
PspGI	CCWGG	1 cut(s)	1110
PspN4I	GGNNCC	1 cut(s)	888
PstI	CTGCAG	1 cut(s)	1456
PsyI	GACNNNGTC	1 cut(s)	380
RsaI	GTAC	2 cut(s)	37, 696
RsaNI	GTAC	2 cut(s)	36, 695
RseI	CAYNNNNRTG	4 cut(s)	612, 728, 1066, 1101
SalI	GTCGAC	1 cut(s)	1747
SaqAI	TTAA	5 cut(s)	105, 140, 645, 717, 1828
SatI	GCNGC	4 cut(s)	426, 827, 1038, 1455
Sau3AI	GATC	2 cut(s)	30, 1565
SchI	GAGTC	7 cut(s)	215, 470, 802, 910, 965, 1744, 1754
ScrFI	CCNGG	2 cut(s)	1112, 1410
SfaNI	GCATC	4 cut(s)	167, 580, 721, 1195
SfcI	CTRYAG	2 cut(s)	1321, 1452
SfuI	TTCGAA	1 cut(s)	1374
SmiMI	CAYNNNNRTG	4 cut(s)	612, 728, 1066, 1101
Sse9I	AATT	6 cut(s)	102, 120, 151, 873, 1075, 1473
SsiI	CCGC	4 cut(s)	191, 855, 1138, 1299
SspMI	CTAG	3 cut(s)	318, 684, 699
StyD4I	CCNGG	2 cut(s)	1110, 1408
StyI	CCWWGG	1 cut(s)	1754
TaaI	ACNGT	8 cut(s)	611, 627, 987, 1025, 1268, 1283, 1322, 1539
TaiI	ACGT	4 cut(s)	514, 520, 1792, 1805
TaqI	TCGA	6 cut(s)	60, 599, 1374, 1437, 1632, 1748
TasI	AATT	6 cut(s)	102, 120, 151, 873, 1075, 1473
Tru1I	TTAA	5 cut(s)	105, 140, 645, 717, 1828
Tru9I	TTAA	5 cut(s)	105, 140, 645, 717, 1828
TscAI	CASTG	2 cut(s)	78, 1497
TseI	GCWGC	4 cut(s)	425, 826, 1037, 1454
TspDTI	ATGAA	8 cut(s)	588, 669, 756, 809, 864, 1056, 1407, 1538
TspRI	CASTG	2 cut(s)	78, 1497
Tth111I	GACNNNGTC	1 cut(s)	380
XmiI	GTMKAC	3 cut(s)	514, 909, 1748
XmnI	GAANNNNTTC	1 cut(s)	885
XspI	CTAG	3 cut(s)	318, 684, 699
Zsp2I	ATGCAT	1 cut(s)	1348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.