Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0005775

Physical Location & Seq

Genomic Coordinates Forward (+)

12881949 .. 12884065

Gene Structure 2117 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g17140.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1257 bp

ATGAAACCTGGTGGTGAATCCGCCCGGTGCATCTTACCTGGAATTGGTTTGCACCTAAATGCTCTTGCAACAACCTCAAAAGACTACAAAACCATTAAGCGTGAAAATATGGCCTATGGTAGACAACTAAGTTTGCCCAACCTCGCTGCCTCTGCTCATTCCCCCACAGCTGGTCAAGGACCTGGTCATGAATCTTTCTCTTCGGCTTCTTCTGAAAGGGACATGGATGGCACCGAAAATGGCGTTCAGCTGCTGCAAGATGCTTCCCAAGAACCTGCATTTTTAGCTAATGAAGAGTTTAACCAGAATAGCCCCAAAAAGAAGAGGCGCAAGTTCGAACAAGCTGGAGAAACCGAGTCTTCTTGCAAACGTTGCAACTGTAAAAAATCGAAGTGTCTGAAACTTTACTGTGAATGCTTTGCTGCTGGTGTCTACTGCATAGAGCCATGTTCATGTCAAGAATGCTTTAACAAGCCTATTCATGAAGATACTGTTCTTGCAACTCGTAAACAGATTGAGTCTCGCAACCCACTTGCATTTGCTCCGAAAGTGATTAGGACCGCTGATCCTGTTCCTGAATATGGGGAGGAGTCCAGCAAGACCCCAGCTTCTGCACGGCATAAAAGAGGTTGCAACTGCAAGAAATCAAGCTGCCTGAAAAAATACTGTGAATGCTATCAGGGCGGTGTTGGATGCTCCATTAGCTGCAGATGTGAAGGCTGTAAAAACGCATTTGGTAGAAAGGATGGATCTTTTGTAGGAACAGAAACTGAGGCAGACGAAGAAGAAACAGAAGCATGCGACAAGAGTGTGGCTGAAAATCATCAACAGAAAAATGAAATTCAGAAAAATGAAGAGCAGCGCCAGGATTCTGCTCTTCCCTCAACGCCATTACGGCTTTCCAGACAATTCTCACTGCCGTTTTCATCAAAGAACAAACCGCCAAGATCTTCTACTTTTAACATTGGATCGTCATCCGGATTATATACAATCACAATCCAGAAACTTGGAAAACCAAATATTCTGCGCCCTGAATCCAATTTAGAGGGACATAACCAAGCAGTTCCAGAGGATGAAATGCCAGAGATTCTTCAAGGAGATGGGTCTCCTAGCACTGGCATCAAGACCGCTTCTCCGAATGGTAAGAGGGTGTCTCCTCCCAATAATGAATTTGGGCCATCACCTGGTCGAAGGGCGGGTAGGAAACTAATTTTGCAGTCCATTCCTTCGTTCCCGTCCCTCACTCCCCAGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0009934 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048444 GO:0048509 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051252 GO:0051302 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04218 map04218

Pfam Domains

Protein Families

TCR

Protein Analysis

419

Amino Acids

45.59

Weight (kDa)

8.56

Isoelectric Point (pI)

74.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005775)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22760 AT3G22760 AT3G22780 AT4G14770 AT4G14770 AT4G14770
fragaria_vesca	FvH4_4g00820 FvH4_4g00820 FvH4_4g00820
malus_domestica	MD13G1197800.v1.1 MD16G1197800.v1.1
prunus_persica	Prupe.1G019100_v2.0.a1 Prupe.1G019100_v2.0.a1
pyrus_communis	pycom13g17130 pycom13g17140 pycom16g16660
rosa_chinensis	RchiOBHm_Chr4g0387371
rosa_laevigata	RLG00000010126
rosa_multiflora	Rmu_sc0000013.1_g000028
rosa_roxburghii	Rroxscaffold_5G00334100
rosa_rugosa	Rorug03G0309000 Rorug03G0309000 Rorug03G0309000
rosa_samantha	Rh4AG015700 Rh4BG010500 Rh4CG016700 Rh4DG011800
rosa_wichuraiana	Rw4G000970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	283
AccB1I	GGYRCC	1 cut(s)	230
AccB7I	CCANNNNNTGG	1 cut(s)	1184
AccI	GTMKAC	2 cut(s)	121, 432
AccIII	TCCGGA	1 cut(s)	977
AciI	CCGC	6 cut(s)	21, 561, 684, 941, 1128, 1196
AclI	AACGTT	1 cut(s)	370
AclWI	GGATC	3 cut(s)	560, 757, 976
AcsI	RAATTY	2 cut(s)	840, 1169
AfiI	CCNNNNNNNGG	5 cut(s)	44, 170, 581, 1115, 1184
AgsI	TTSAA	1 cut(s)	1094
AjnI	CCWGG	5 cut(s)	7, 37, 181, 864, 1183
AluBI	AGCT	7 cut(s)	170, 250, 287, 344, 608, 651, 705
AluI	AGCT	7 cut(s)	170, 250, 287, 344, 608, 651, 705
Alw26I	GTCTC	3 cut(s)	525, 1110, 1158
AlwI	GGATC	3 cut(s)	560, 757, 976
AlwNI	CAGNNNCTG	3 cut(s)	253, 611, 770
Aor13HI	TCCGGA	1 cut(s)	977
AoxI	GGCC	2 cut(s)	111, 1175
ApeKI	GCWGC	7 cut(s)	146, 250, 253, 422, 651, 705, 859
ApoI	RAATTY	2 cut(s)	840, 1169
AspLEI	GCGC	3 cut(s)	330, 864, 1029
AspS9I	GGNCC	3 cut(s)	179, 558, 1175
AsuC2I	CCSGG	1 cut(s)	25
AsuHPI	GGTGA	2 cut(s)	26, 1173
AsuII	TTCGAA	1 cut(s)	336
AvaII	GGWCC	2 cut(s)	179, 558
BanI	GGYRCC	1 cut(s)	230
BbsI	GAAGAC	1 cut(s)	351
BbvI	GCAGC	7 cut(s)	133, 237, 240, 409, 638, 692, 871
BccI	CCATC	4 cut(s)	221, 740, 1094, 1186
BceAI	ACGGC	3 cut(s)	632, 904, 911
BciT130I	CCWGG	5 cut(s)	9, 39, 183, 866, 1185
BcnI	CCSGG	1 cut(s)	25
BcoDI	GTCTC	3 cut(s)	525, 1110, 1158
BfaI	CTAG	1 cut(s)	1110
BfmI	CTRYAG	1 cut(s)	706
BfoI	RGCGCY	1 cut(s)	865
BfuAI	ACCTGC	1 cut(s)	283
BglI	GCCNNNNNGGC	1 cut(s)	895
BglII	AGATCT	1 cut(s)	947
BisI	GCNGC	7 cut(s)	147, 251, 254, 423, 652, 706, 860
BlsI	GCNGC	7 cut(s)	148, 252, 255, 424, 653, 707, 861
Bme1390I	CCNGG	6 cut(s)	9, 25, 39, 183, 866, 1185
Bme18I	GGWCC	2 cut(s)	179, 558
BmgT120I	GGNCC	3 cut(s)	179, 558, 1175
BmiI	GGNNCC	1 cut(s)	232
BmrFI	CCNGG	6 cut(s)	9, 25, 39, 183, 866, 1185
BmsI	GCATC	4 cut(s)	39, 250, 683, 1128
BpiI	GAAGAC	1 cut(s)	351
BplI	GAGNNNNNCTC	2 cut(s)	1138, 1170
BpmI	CTGGAG	1 cut(s)	366
Bpu14I	TTCGAA	1 cut(s)	336
BpuMI	CCSGG	1 cut(s)	25
BsaBI	GATNNNNATC	1 cut(s)	973
BsaI	GGTCTC	1 cut(s)	1110
BsaWI	WCCGGW	1 cut(s)	977
BsaXI	ACNNNNNCTCC	2 cut(s)	1117, 1147
Bsc4I	CCNNNNNNNGG	5 cut(s)	44, 170, 581, 1115, 1184
Bse1I	ACTGG	1 cut(s)	1120
Bse8I	GATNNNNATC	1 cut(s)	973
BseAI	TCCGGA	1 cut(s)	977
BseBI	CCWGG	5 cut(s)	9, 39, 183, 866, 1185
BseGI	GGATG	5 cut(s)	232, 698, 751, 974, 1078
BseJI	GATNNNNATC	1 cut(s)	973
BseLI	CCNNNNNNNGG	5 cut(s)	44, 170, 581, 1115, 1184
BseMII	CTCAG	1 cut(s)	762
BseNI	ACTGG	1 cut(s)	1120
BseRI	GAGGAG	2 cut(s)	602, 1146
BseXI	GCAGC	7 cut(s)	133, 237, 240, 409, 638, 692, 871
BseYI	CCCAGC	2 cut(s)	604, 1248
BsgI	GTGCAG	1 cut(s)	597
BshFI	GGCC	2 cut(s)	113, 1177
BshNI	GGYRCC	1 cut(s)	230
BsiSI	CCGG	2 cut(s)	25, 978
BslFI	GGGAC	3 cut(s)	233, 1062, 1222
BslI	CCNNNNNNNGG	5 cut(s)	44, 170, 581, 1115, 1184
BsmAI	GTCTC	3 cut(s)	525, 1110, 1158
BsmFI	GGGAC	3 cut(s)	233, 1062, 1222
BsmI	GAATGC	3 cut(s)	419, 467, 677
BsnI	GGCC	2 cut(s)	113, 1177
Bso31I	GGTCTC	1 cut(s)	1110
Bsp119I	TTCGAA	1 cut(s)	336
Bsp13I	TCCGGA	1 cut(s)	977
Bsp143I	GATC	4 cut(s)	565, 749, 947, 968
BspACI	CCGC	6 cut(s)	21, 561, 684, 941, 1128, 1196
BspANI	GGCC	2 cut(s)	113, 1177
BspCNI	CTCAG	1 cut(s)	763
BspEI	TCCGGA	1 cut(s)	977
BspHI	TCATGA	2 cut(s)	187, 481
BspLI	GGNNCC	1 cut(s)	232
BspMAI	CTGCAG	1 cut(s)	710
BspMI	ACCTGC	1 cut(s)	283
BspPI	GGATC	3 cut(s)	560, 757, 976
BspQI	GCTCTTC	2 cut(s)	849, 882
BspT104I	TTCGAA	1 cut(s)	336
BspT107I	GGYRCC	1 cut(s)	230
BspTNI	GGTCTC	1 cut(s)	1110
BsrI	ACTGG	1 cut(s)	1120
BssMI	GATC	4 cut(s)	565, 749, 947, 968
Bst2UI	CCWGG	5 cut(s)	9, 39, 183, 866, 1185
Bst4CI	ACNGT	4 cut(s)	380, 410, 493, 668
Bst6I	CTCTTC	5 cut(s)	205, 288, 317, 849, 882
BstAPI	GCANNNNNTGC	1 cut(s)	372
BstBI	TTCGAA	1 cut(s)	336
BstC8I	GCNNGC	1 cut(s)	799
BstDEI	CTNAG	2 cut(s)	128, 771
BstF5I	GGATG	5 cut(s)	232, 698, 751, 974, 1078
BstH2I	RGCGCY	1 cut(s)	865
BstHHI	GCGC	3 cut(s)	330, 864, 1029
BstKTI	GATC	4 cut(s)	568, 752, 950, 971
BstMAI	GTCTC	3 cut(s)	525, 1110, 1158
BstMBI	GATC	4 cut(s)	565, 749, 947, 968
BstMWI	GCNNNNNNNGC	6 cut(s)	152, 284, 372, 681, 702, 895
BstNI	CCWGG	5 cut(s)	9, 39, 183, 866, 1185
BstNSI	RCATGY	1 cut(s)	801
BstSCI	CCNGG	6 cut(s)	7, 23, 37, 181, 864, 1183
BstSFI	CTRYAG	1 cut(s)	706
BstV1I	GCAGC	7 cut(s)	133, 237, 240, 409, 638, 692, 871
BstV2I	GAAGAC	1 cut(s)	351
BstX2I	RGATCY	2 cut(s)	749, 947
BstXI	CCANNNNNNTGG	1 cut(s)	1007
BstYI	RGATCY	2 cut(s)	749, 947
BsuRI	GGCC	2 cut(s)	113, 1177
BtsCI	GGATG	5 cut(s)	232, 698, 751, 974, 1078
BtsI	GCAGTG	1 cut(s)	914
BtsIMutI	CAGTG	2 cut(s)	914, 1113
BveI	ACCTGC	1 cut(s)	283
Cac8I	GCNNGC	1 cut(s)	799
CaiI	CAGNNNCTG	3 cut(s)	253, 611, 770
CciI	TCATGA	2 cut(s)	187, 481
CfoI	GCGC	3 cut(s)	330, 864, 1029
Cfr13I	GGNCC	3 cut(s)	179, 558, 1175
CsiI	ACCWGGT	3 cut(s)	7, 181, 1183
CviAII	CATG	6 cut(s)	188, 223, 447, 453, 482, 798
DdeI	CTNAG	2 cut(s)	128, 771
DpnI	GATC	4 cut(s)	567, 751, 949, 970
DpnII	GATC	4 cut(s)	565, 749, 947, 968
Eam1104I	CTCTTC	5 cut(s)	205, 288, 317, 849, 882
EarI	CTCTTC	5 cut(s)	205, 288, 317, 849, 882
EciI	GGCGGA	1 cut(s)	10
Eco31I	GGTCTC	1 cut(s)	1110
Eco47I	GGWCC	2 cut(s)	179, 558
EcoO109I	RGGNCCY	1 cut(s)	179
EcoRII	CCWGG	5 cut(s)	7, 37, 181, 864, 1183
FaeI	CATG	6 cut(s)	191, 226, 450, 456, 485, 801
FaqI	GGGAC	3 cut(s)	233, 1062, 1222
FatI	CATG	6 cut(s)	187, 222, 446, 452, 481, 797
FauI	CCCGC	1 cut(s)	1189
FblI	GTMKAC	2 cut(s)	121, 432
Fnu4HI	GCNGC	7 cut(s)	147, 251, 254, 423, 652, 706, 860
FokI	GGATG	5 cut(s)	239, 705, 758, 961, 1085
Fsp4HI	GCNGC	7 cut(s)	147, 251, 254, 423, 652, 706, 860
FspBI	CTAG	1 cut(s)	1110
GlaI	GCGC	3 cut(s)	329, 863, 1028
GluI	GCNGC	7 cut(s)	147, 251, 254, 423, 652, 706, 860
GsaI	CCCAGC	2 cut(s)	608, 1252
GsuI	CTGGAG	1 cut(s)	366
HaeII	RGCGCY	1 cut(s)	865
HaeIII	GGCC	2 cut(s)	113, 1177
HapII	CCGG	2 cut(s)	25, 978
HhaI	GCGC	3 cut(s)	330, 864, 1029
Hin1II	CATG	6 cut(s)	191, 226, 450, 456, 485, 801
Hin6I	GCGC	3 cut(s)	328, 862, 1027
HinP1I	GCGC	3 cut(s)	328, 862, 1027
HinfI	GANTC	8 cut(s)	17, 191, 356, 518, 590, 869, 1034, 1087
HpaII	CCGG	2 cut(s)	25, 978
HphI	GGTGA	2 cut(s)	26, 1173
Hpy166II	GTNNAC	3 cut(s)	122, 433, 509
Hpy188I	TCNGA	5 cut(s)	214, 399, 546, 846, 1137
Hpy188III	TCNNGA	9 cut(s)	188, 458, 482, 575, 903, 978, 1000, 1067, 1123
Hpy8I	GTNNAC	3 cut(s)	122, 433, 509
HpyAV	CCTTC	3 cut(s)	710, 1185, 1236
HpyCH4III	ACNGT	4 cut(s)	380, 410, 493, 668
HpyCH4IV	ACGT	1 cut(s)	370
HpyF10VI	GCNNNNNNNGC	6 cut(s)	152, 284, 372, 681, 702, 895
HpyF3I	CTNAG	2 cut(s)	128, 771
HpySE526I	ACGT	1 cut(s)	370
Hsp92II	CATG	6 cut(s)	191, 226, 450, 456, 485, 801
HspAI	GCGC	3 cut(s)	328, 862, 1027
Kpn2I	TCCGGA	1 cut(s)	977
Kzo9I	GATC	4 cut(s)	565, 749, 947, 968
LguI	GCTCTTC	2 cut(s)	849, 882
LmnI	GCTCC	2 cut(s)	547, 701
Lsp1109I	GCAGC	7 cut(s)	133, 237, 240, 409, 638, 692, 871
LweI	GCATC	4 cut(s)	39, 250, 683, 1128
MabI	ACCWGGT	3 cut(s)	7, 181, 1183
MaeI	CTAG	1 cut(s)	1110
MaeII	ACGT	1 cut(s)	370
MalI	GATC	4 cut(s)	567, 751, 949, 970
MboI	GATC	4 cut(s)	565, 749, 947, 968
MflI	RGATCY	2 cut(s)	749, 947
MluCI	AATT	6 cut(s)	42, 840, 908, 1039, 1169, 1209
MlyI	GAGTC	3 cut(s)	365, 527, 599
MmeI	TCCRAC	1 cut(s)	670
MroI	TCCGGA	1 cut(s)	977
MseI	TTAA	4 cut(s)	96, 300, 468, 960
MslI	CAYNNNNRTG	2 cut(s)	57, 451
MspA1I	CMGCKG	3 cut(s)	170, 250, 563
MspI	CCGG	2 cut(s)	25, 978
MspR9I	CCNGG	6 cut(s)	9, 25, 39, 183, 866, 1185
Mva1269I	GAATGC	3 cut(s)	419, 467, 677
MvaI	CCWGG	5 cut(s)	9, 39, 183, 866, 1185
MwoI	GCNNNNNNNGC	6 cut(s)	152, 284, 372, 681, 702, 895
NciI	CCSGG	1 cut(s)	25
NdeII	GATC	4 cut(s)	565, 749, 947, 968
NlaIII	CATG	6 cut(s)	191, 226, 450, 456, 485, 801
NlaIV	GGNNCC	1 cut(s)	232
NspI	RCATGY	1 cut(s)	801
NspV	TTCGAA	1 cut(s)	336
PaeI	GCATGC	1 cut(s)	801
PagI	TCATGA	2 cut(s)	187, 481
PciSI	GCTCTTC	2 cut(s)	849, 882
PctI	GAATGC	3 cut(s)	419, 467, 677
PfeI	GAWTC	5 cut(s)	17, 191, 869, 1034, 1087
PflFI	GACNNNGTC	1 cut(s)	183
PflMI	CCANNNNNTGG	1 cut(s)	1184
PkrI	GCNGC	7 cut(s)	148, 252, 255, 424, 653, 707, 861
PleI	GAGTC	3 cut(s)	364, 526, 598
PpsI	GAGTC	3 cut(s)	364, 526, 598
PpuMI	RGGWCCY	1 cut(s)	179
Psp1406I	AACGTT	1 cut(s)	370
Psp5II	RGGWCCY	1 cut(s)	179
Psp6I	CCWGG	5 cut(s)	7, 37, 181, 864, 1183
PspFI	CCCAGC	2 cut(s)	604, 1248
PspGI	CCWGG	5 cut(s)	7, 37, 181, 864, 1183
PspN4I	GGNNCC	1 cut(s)	232
PspPI	GGNCC	3 cut(s)	179, 558, 1175
PspPPI	RGGWCCY	1 cut(s)	179
PstI	CTGCAG	1 cut(s)	710
PstNI	CAGNNNCTG	3 cut(s)	253, 611, 770
PsuI	RGATCY	2 cut(s)	749, 947
PsyI	GACNNNGTC	1 cut(s)	183
PvuII	CAGCTG	2 cut(s)	170, 250
RseI	CAYNNNNRTG	2 cut(s)	57, 451
SapI	GCTCTTC	2 cut(s)	849, 882
SaqAI	TTAA	4 cut(s)	96, 300, 468, 960
SatI	GCNGC	7 cut(s)	147, 251, 254, 423, 652, 706, 860
Sau3AI	GATC	4 cut(s)	565, 749, 947, 968
Sau96I	GGNCC	3 cut(s)	179, 558, 1175
SchI	GAGTC	3 cut(s)	365, 527, 599
ScrFI	CCNGG	6 cut(s)	9, 25, 39, 183, 866, 1185
SexAI	ACCWGGT	3 cut(s)	7, 181, 1183
SfaNI	GCATC	4 cut(s)	39, 250, 683, 1128
SfcI	CTRYAG	1 cut(s)	706
SfuI	TTCGAA	1 cut(s)	336
SinI	GGWCC	2 cut(s)	179, 558
SmiMI	CAYNNNNRTG	2 cut(s)	57, 451
SphI	GCATGC	1 cut(s)	801
Sse9I	AATT	6 cut(s)	42, 840, 908, 1039, 1169, 1209
SsiI	CCGC	6 cut(s)	21, 561, 684, 941, 1128, 1196
SspI	AATATT	1 cut(s)	1021
SspMI	CTAG	1 cut(s)	1110
StyD4I	CCNGG	6 cut(s)	7, 23, 37, 181, 864, 1183
TaaI	ACNGT	4 cut(s)	380, 410, 493, 668
TaiI	ACGT	1 cut(s)	373
TaqI	TCGA	3 cut(s)	336, 389, 1189
TasI	AATT	6 cut(s)	42, 840, 908, 1039, 1169, 1209
TfiI	GAWTC	5 cut(s)	17, 191, 869, 1034, 1087
Tru1I	TTAA	4 cut(s)	96, 300, 468, 960
Tru9I	TTAA	4 cut(s)	96, 300, 468, 960
TscAI	CASTG	2 cut(s)	921, 1120
TseI	GCWGC	7 cut(s)	146, 250, 253, 422, 651, 705, 859
TspRI	CASTG	2 cut(s)	921, 1120
Tth111I	GACNNNGTC	1 cut(s)	183
Van91I	CCANNNNNTGG	1 cut(s)	1184
VpaK11BI	GGWCC	2 cut(s)	179, 558
XapI	RAATTY	2 cut(s)	840, 1169
XceI	RCATGY	1 cut(s)	801
XmiI	GTMKAC	2 cut(s)	121, 432
XspI	CTAG	1 cut(s)	1110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.