AT3G22780

tesmin tso1-like cxc

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Forward (+)
8048802 .. 8052504
3703 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G22780.1

Sequence Viewer

Length: 2088 bp
ATGGACAAATCCCAGAAGAATCCTACTTCCCAGATCGGAACTTCAACTCCCAAATCCAAATTCGAGGATTCTCCAGTGTTCAACTACATAAGCAACCTCTCTCCAATTGAGTCGGTCAAATCTATCTCCACTGCTCAAACGTTTAGCTCTCTTAGTTTCACATCTCCTCCTCCTGTGTTTACTTCTCCTCACGTCATTTCTCACAGAGAATCCAGATTCTTCAGATGTCATAACTCTGTTGATCGTTCAAAGCACTTAGAATCTTTAGATGGATCTGCTGTTAAAGGAGAAGTTGTAGTACCATTAGTTGAAGATCTAAATAAAGAAGCTTCTTTGGAAGATGAAGAAGAAACTTCTGTTGAAACGTCTTCTGAGCTGCCACAGATCATGAAGTTCGATAGCCAAACTTCTGAGCATAGTGATTCACCTTGCACTGAAGATGTTGTTATTGAAGCTTCATCTGATCCTCCTCGAGGAGACAATGGTTCGTCATCCGAGGATGTCACGATGGGACTTCAGAATATGCTTGTTGTTCGGGAAGGGAATGACACTCCTGGTTGTGGACGTTTGATCTCAGATGCAACTGAGCTGTTAGTATTTCGATCTCCGAATGATTCTGAGGCTTTTAGATGCTTGGTCGATAAAATATCAAGCTCAGAAAGACGGTTCTGTGCTGGTGTCAAGTCTACAAAGCGGCCTGATATCAACAAAGATATTCCAGCCAATGGATCTAGTAATGAAAATCAGCCTTTGGCTGTGCTTCCTACAAACGAGTCTGTCTTTAACTTGCATCGTGGTGGCATGCGAAGACGCTGCCTTGACTTTGAGATGCCAGGGAAACGGAAGAAGGATATTGTTGATGATCAGCAATCTGTGTGTGACAATAATGTGGCTGGTGAATCTTCCTCGAGCTGTGTTGTACCTGGTATTGGTCTTCATCTAAACGCCGTTGCAATGTCTGCAAAGGACAGTAACATCAGTGTCATACATGGCTATTCCATATCTGGAGAGATTCAAAAGAGTTTCTCAGGCTCTACCACTCCAATTCAGTCCCAAGACACTGTGCAAGAAACTTCGGACCAGGCAGAAAACGAACCTGTAGAAGAAGTTCCCAAAGCATTGGTGTTCCCAGAGTTGAATCTAGGCAGCCTTAAGAAAAAGATGCGTAAATCTGAACAAGCTGGGGAGGGTGAGTCATGTAAACGATGCAACTGCAAAAAGTCTAAGTGTTTGAAGCTTTACTGTGAATGCTTTGCTGCTGGGGTTTATTGCATAGAGCCATGTTCATGTATAGATTGCTTCAACAAACCTATCCATGAAGAAACTGTTTTGGCTACCCGCAAACAGATTGAATCCCGAAATCCACTTGCATTTGCTCCTAAAGTCATCAGAAATGCAGATTCCATCATGGAAGCTAGTGATGATGCCAGTAAAACCCCGGCTTCTGCACGACACAAACGTGGCTGCAACTGCAAGAAATCAAACTGTATGAAGAAATACTGTGAATGCTATCAGGGTGGAGTCGGCTGTTCCATGAACTGTAGATGCGAAGGATGCACAAATGTATTCGGCAGAAAAGATGGGTCTTTACTTGTTATCATGGAAAGCAAACTAGAGGAGAATCAGGAGACATATGAGAAAAGAATAGCAAAAATCCAACACAACGTCGAGGTGTCGAAAGAAGTGGAGCAGAACCCAAGTTCTGATCAACCTTCGACACCACTGCCACCGTACAGACATTTGGTGGTTCATCAGCCATTCTTGTCTAAGAACAGACTGCCTCCGACACAGTTTTTTCTTGGCACAGGTTCTTCCTCTTTCAGAAAACCAAACAGTGATTTGGCGCAATCACAGAATGAGAAGAAGCCTCTTGAAACTGTGACTGAGGACAAAACAGAGATTATGCCTGAGATTCTCCTCAATTCCCCTATAGCTAACATCAAGGCCATCTCTCCCAACAGCAAGAGAGTCTCTCCCCCTCAACCCGGCTCCTCGGAGTCAGGCTCAATCCTAAGGAGAAGAGGTAATGGCCGGAAGCTGATACTACGGTCTATTCCAGCATTTCCTTCTCTCAACCCAAATCAGTGA

Protein Analysis

695

Amino Acids

76.28

Weight (kDa)

6.3

Isoelectric Point (pI)

64.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TCR PF03638 401 - 436 1e-11 Tesmin/TSO1-like CXC domain, cysteine-rich domain
TCR PF03638 486 - 521 4.7e-11 Tesmin/TSO1-like CXC domain, cysteine-rich domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 471
AccB7I CCANNNNNTGG 1 cut(s) 725
AccI GTMKAC 1 cut(s) 686
AciI CCGC 2 cut(s) 694, 1339
AclI AACGTT 1 cut(s) 140
AclWI GGATC 3 cut(s) 280, 458, 736
AcoI YGGCCR 1 cut(s) 2029
AcsI RAATTY 1 cut(s) 59
AcuI CTGAAG 3 cut(s) 205, 456, 500
AfaI GTAC 3 cut(s) 300, 921, 1733
AfiI CCNNNNNNNGG 5 cut(s) 473, 560, 725, 929, 1985
AflII CTTAAG 1 cut(s) 1151
AjiI CACGTC 1 cut(s) 193
AjnI CCWGG 4 cut(s) 553, 832, 922, 1080
AjuI GAANNNNNNNTTGG 2 cut(s) 44, 76
AleI CACNNNNGTG 1 cut(s) 1458
AloI GAACNNNNNNTCC 2 cut(s) 31, 63
Alw26I GTCTC 3 cut(s) 471, 1622, 1975
AlwI GGATC 3 cut(s) 280, 458, 736
Ama87I CYCGRG 2 cut(s) 471, 907
AoxI GGCC 3 cut(s) 695, 1944, 2029
ApeKI GCWGC 5 cut(s) 376, 813, 1146, 1256, 1464
ApoI RAATTY 1 cut(s) 59
Asp700I GAANNNNTTC 1 cut(s) 1107
AspLEI GCGC 1 cut(s) 1846
AspS9I GGNCC 1 cut(s) 1078
AsuC2I CCSGG 2 cut(s) 1439, 1986
AsuHPI GGTGA 3 cut(s) 417, 908, 1202
AvaI CYCGRG 2 cut(s) 471, 907
AvaII GGWCC 1 cut(s) 1078
AxyI CCTNAGG 1 cut(s) 2012
BaeI ACNNNNGTAYC 2 cut(s) 2033, 2066
BarI GAAGNNNNNNTAC 2 cut(s) 282, 314
BbsI GAAGAC 3 cut(s) 360, 814, 926
BbvI GCAGC 5 cut(s) 363, 800, 1158, 1243, 1451
BccI CCATC 5 cut(s) 263, 502, 1412, 1574, 1955
BceAI ACGGC 1 cut(s) 932
BcgI CGANNNNNNTGC 6 cut(s) 795, 829, 1194, 1228, 1705, 1739
BciT130I CCWGG 4 cut(s) 555, 834, 924, 1082
BclI TGATCA 2 cut(s) 862, 1705
BcnI CCSGG 2 cut(s) 1439, 1986
BcoDI GTCTC 3 cut(s) 471, 1622, 1975
BfaI CTAG 4 cut(s) 732, 1142, 1416, 1613
BfmI CTRYAG 3 cut(s) 1098, 1540, 1929
BfrI CTTAAG 1 cut(s) 1151
BglII AGATCT 1 cut(s) 313
BisI GCNGC 6 cut(s) 377, 695, 814, 1147, 1257, 1465
BlsI GCNGC 6 cut(s) 378, 696, 815, 1148, 1258, 1466
Bme1390I CCNGG 6 cut(s) 555, 834, 924, 1082, 1439, 1986
Bme18I GGWCC 1 cut(s) 1078
BmeT110I CYCGRG 2 cut(s) 471, 907
BmgBI CACGTC 1 cut(s) 193
BmgT120I GGNCC 1 cut(s) 1078
BmiI GGNNCC 1 cut(s) 1990
BmrFI CCNGG 6 cut(s) 555, 834, 924, 1082, 1439, 1986
BmsI GCATC 9 cut(s) 568, 620, 799, 819, 1152, 1196, 1414, 1535, 1544
BpiI GAAGAC 3 cut(s) 360, 814, 926
BplI GAGNNNNNCTC 4 cut(s) 1957, 1989, 1988, 2020
BpmI CTGGAG 2 cut(s) 57, 1026
BpuMI CCSGG 2 cut(s) 1439, 1986
BsaJI CCNNGG 4 cut(s) 495, 833, 1437, 1992
Bsc4I CCNNNNNNNGG 5 cut(s) 473, 560, 725, 929, 1985
Bse1I ACTGG 2 cut(s) 74, 1428
Bse21I CCTNAGG 1 cut(s) 2012
Bse3DI GCAATG 1 cut(s) 960
BseBI CCWGG 4 cut(s) 555, 834, 924, 1082
BseDI CCNNGG 4 cut(s) 495, 833, 1437, 1992
BseGI GGATG 3 cut(s) 491, 505, 1559
BseLI CCNNNNNNNGG 5 cut(s) 473, 560, 725, 929, 1985
BseMI GCAATG 1 cut(s) 960
BseMII CTCAG 9 cut(s) 363, 402, 576, 588, 609, 669, 1041, 1875, 1899
BseNI ACTGG 2 cut(s) 74, 1428
BseRI GAGGAG 8 cut(s) 156, 159, 177, 459, 489, 1631, 1907, 1981
BseXI GCAGC 5 cut(s) 363, 800, 1158, 1243, 1451
BseYI CCCAGC 2 cut(s) 1181, 1259
BsgI GTGCAG 1 cut(s) 1431
BshFI GGCC 3 cut(s) 697, 1946, 2031
BsiHKCI CYCGRG 2 cut(s) 471, 907
BsiSI CCGG 3 cut(s) 1439, 1986, 2032
BslFI GGGAC 2 cut(s) 525, 1036
BslI CCNNNNNNNGG 5 cut(s) 473, 560, 725, 929, 1985
BsmAI GTCTC 3 cut(s) 471, 1622, 1975
BsmFI GGGAC 2 cut(s) 525, 1036
BsmI GAATGC 2 cut(s) 1253, 1511
BsnI GGCC 3 cut(s) 697, 1946, 2031
BsoBI CYCGRG 2 cut(s) 471, 907
BspACI CCGC 2 cut(s) 694, 1339
BspANI GGCC 3 cut(s) 697, 1946, 2031
BspCNI CTCAG 9 cut(s) 364, 403, 577, 587, 610, 668, 1040, 1876, 1900
BspHI TCATGA 1 cut(s) 387
BspLI GGNNCC 1 cut(s) 1990
BspPI GGATC 3 cut(s) 280, 458, 736
BspTI CTTAAG 1 cut(s) 1151
BsrDI GCAATG 1 cut(s) 960
BsrI ACTGG 2 cut(s) 74, 1428
BssECI CCNNGG 4 cut(s) 495, 833, 1437, 1992
Bst2UI CCWGG 4 cut(s) 555, 834, 924, 1082
Bst6I CTCTTC 1 cut(s) 2014
BstAFI CTTAAG 1 cut(s) 1151
BstAPI GCANNNNNTGC 1 cut(s) 959
BstC8I GCNNGC 1 cut(s) 803
BstENI CCTNNNNNAGG 1 cut(s) 471
BstF5I GGATG 3 cut(s) 491, 505, 1559
BstHHI GCGC 1 cut(s) 1846
BstMAI GTCTC 3 cut(s) 471, 1622, 1975
BstMWI GCNNNNNNNGC 3 cut(s) 959, 1470, 1554
BstNI CCWGG 4 cut(s) 555, 834, 924, 1082
BstNSI RCATGY 1 cut(s) 805
BstSCI CCNGG 6 cut(s) 553, 832, 922, 1080, 1437, 1984
BstSFI CTRYAG 3 cut(s) 1098, 1540, 1929
BstV1I GCAGC 5 cut(s) 363, 800, 1158, 1243, 1451
BstV2I GAAGAC 3 cut(s) 360, 814, 926
BstX2I RGATCY 3 cut(s) 272, 313, 728
BstXI CCANNNNNNTGG 1 cut(s) 1120
BstYI RGATCY 3 cut(s) 272, 313, 728
Bsu36I CCTNAGG 1 cut(s) 2012
BsuRI GGCC 3 cut(s) 697, 1946, 2031
BtrI CACGTC 1 cut(s) 193
BtsCI GGATG 3 cut(s) 491, 505, 1559
BtsI GCAGTG 2 cut(s) 129, 1721
BtsIMutI CAGTG 7 cut(s) 81, 129, 432, 985, 1059, 1721, 1840
Cac8I GCNNGC 1 cut(s) 803
CciI TCATGA 1 cut(s) 387
CfoI GCGC 1 cut(s) 1846
Cfr13I GGNCC 1 cut(s) 1078
CseI GACGC 1 cut(s) 819
CsiI ACCWGGT 1 cut(s) 922
Csp6I GTAC 3 cut(s) 299, 920, 1732
CviQI GTAC 3 cut(s) 299, 920, 1732
EaeI YGGCCR 1 cut(s) 2029
Eam1104I CTCTTC 1 cut(s) 2014
EarI CTCTTC 1 cut(s) 2014
Eco32I GATATC 1 cut(s) 703
Eco47I GGWCC 1 cut(s) 1078
Eco57I CTGAAG 3 cut(s) 205, 456, 500
Eco81I CCTNAGG 1 cut(s) 2012
Eco88I CYCGRG 2 cut(s) 471, 907
EcoNI CCTNNNNNAGG 1 cut(s) 471
EcoRII CCWGG 4 cut(s) 553, 832, 922, 1080
EcoRV GATATC 1 cut(s) 703
FaqI GGGAC 2 cut(s) 525, 1036
FauI CCCGC 1 cut(s) 1346
FauNDI CATATG 1 cut(s) 1633
FbaI TGATCA 2 cut(s) 862, 1705
FblI GTMKAC 1 cut(s) 686
Fnu4HI GCNGC 6 cut(s) 377, 695, 814, 1147, 1257, 1465
FokI GGATG 3 cut(s) 478, 512, 1566
Fsp4HI GCNGC 6 cut(s) 377, 695, 814, 1147, 1257, 1465
FspBI CTAG 4 cut(s) 732, 1142, 1416, 1613
GlaI GCGC 1 cut(s) 1845
GluI GCNGC 6 cut(s) 377, 695, 814, 1147, 1257, 1465
GsaI CCCAGC 2 cut(s) 1185, 1263
GsuI CTGGAG 2 cut(s) 57, 1026
HaeIII GGCC 3 cut(s) 697, 1946, 2031
HapII CCGG 3 cut(s) 1439, 1986, 2032
HgaI GACGC 1 cut(s) 819
HhaI GCGC 1 cut(s) 1846
Hin6I GCGC 1 cut(s) 1844
HinP1I GCGC 1 cut(s) 1844
HindIII AAGCTT 3 cut(s) 327, 453, 1235
HpaII CCGG 3 cut(s) 1439, 1986, 2032
HphI GGTGA 3 cut(s) 417, 908, 1202
Hpy166II GTNNAC 4 cut(s) 180, 563, 687, 1202
Hpy188III TCNNGA 8 cut(s) 213, 388, 505, 536, 1005, 1356, 1625, 1871
Hpy8I GTNNAC 4 cut(s) 180, 563, 687, 1202
Hpy99I CGWCG 1 cut(s) 1670
HpyAV CCTTC 5 cut(s) 533, 841, 1544, 1722, 2076
HpyCH4IV ACGT 6 cut(s) 140, 192, 365, 565, 1459, 1665
HpyF10VI GCNNNNNNNGC 3 cut(s) 959, 1470, 1554
HpySE526I ACGT 6 cut(s) 140, 192, 365, 565, 1459, 1665
HspAI GCGC 1 cut(s) 1844
Ksp22I TGATCA 2 cut(s) 862, 1705
LmnI GCTCC 3 cut(s) 1381, 1687, 1994
Lsp1109I GCAGC 5 cut(s) 363, 800, 1158, 1243, 1451
LweI GCATC 9 cut(s) 568, 620, 799, 819, 1152, 1196, 1414, 1535, 1544
MabI ACCWGGT 1 cut(s) 922
MaeI CTAG 4 cut(s) 732, 1142, 1416, 1613
MaeII ACGT 6 cut(s) 140, 192, 365, 565, 1459, 1665
MaeIII GTNAC 4 cut(s) 502, 878, 971, 1879
MfeI CAATTG 1 cut(s) 105
MflI RGATCY 3 cut(s) 272, 313, 728
MluCI AATT 4 cut(s) 59, 105, 1044, 1921
MlyI GAGTC 6 cut(s) 119, 782, 1202, 1530, 1977, 2006
MmeI TCCRAC 2 cut(s) 1681, 1808
MroXI GAANNNNTTC 1 cut(s) 1107
MseI TTAA 3 cut(s) 282, 783, 1152
MslI CAYNNNNRTG 3 cut(s) 795, 1285, 1458
MspCI CTTAAG 1 cut(s) 1151
MspI CCGG 3 cut(s) 1439, 1986, 2032
MspR9I CCNGG 6 cut(s) 555, 834, 924, 1082, 1439, 1986
MunI CAATTG 1 cut(s) 105
Mva1269I GAATGC 2 cut(s) 1253, 1511
MvaI CCWGG 4 cut(s) 555, 834, 924, 1082
MwoI GCNNNNNNNGC 3 cut(s) 959, 1470, 1554
NciI CCSGG 2 cut(s) 1439, 1986
NdeI CATATG 1 cut(s) 1633
NlaIV GGNNCC 1 cut(s) 1990
NmuCI GTSAC 3 cut(s) 502, 878, 1879
NspI RCATGY 1 cut(s) 805
OliI CACNNNNGTG 1 cut(s) 1458
PaeI GCATGC 1 cut(s) 805
PaeR7I CTCGAG 2 cut(s) 471, 907
PagI TCATGA 1 cut(s) 387
PcsI WCGNNNNNNNCGW 1 cut(s) 1456
PctI GAATGC 2 cut(s) 1253, 1511
PdmI GAANNNNTTC 1 cut(s) 1107
PflMI CCANNNNNTGG 1 cut(s) 725
PkrI GCNGC 6 cut(s) 378, 696, 815, 1148, 1258, 1466
PleI GAGTC 6 cut(s) 118, 781, 1201, 1529, 1976, 2005
PpsI GAGTC 6 cut(s) 118, 781, 1201, 1529, 1976, 2005
Psp1406I AACGTT 1 cut(s) 140
Psp6I CCWGG 4 cut(s) 553, 832, 922, 1080
PspFI CCCAGC 2 cut(s) 1181, 1259
PspGI CCWGG 4 cut(s) 553, 832, 922, 1080
PspN4I GGNNCC 1 cut(s) 1990
PspPI GGNCC 1 cut(s) 1078
PspXI VCTCGAGB 2 cut(s) 471, 907
PsrI GAACNNNNNNTAC 2 cut(s) 1092, 1124
PsuI RGATCY 3 cut(s) 272, 313, 728
RsaI GTAC 3 cut(s) 300, 921, 1733
RsaNI GTAC 3 cut(s) 299, 920, 1732
RseI CAYNNNNRTG 3 cut(s) 795, 1285, 1458
SaqAI TTAA 3 cut(s) 282, 783, 1152
SatI GCNGC 6 cut(s) 377, 695, 814, 1147, 1257, 1465
Sau96I GGNCC 1 cut(s) 1078
SchI GAGTC 6 cut(s) 119, 782, 1202, 1530, 1977, 2006
ScrFI CCNGG 6 cut(s) 555, 834, 924, 1082, 1439, 1986
SexAI ACCWGGT 1 cut(s) 922
SfaNI GCATC 9 cut(s) 568, 620, 799, 819, 1152, 1196, 1414, 1535, 1544
SfcI CTRYAG 3 cut(s) 1098, 1540, 1929
Sfr274I CTCGAG 2 cut(s) 471, 907
SinI GGWCC 1 cut(s) 1078
SlaI CTCGAG 2 cut(s) 471, 907
SmiMI CAYNNNNRTG 3 cut(s) 795, 1285, 1458
SmlI CTYRAG 3 cut(s) 471, 907, 1151
SmoI CTYRAG 3 cut(s) 471, 907, 1151
SphI GCATGC 1 cut(s) 805
Sse9I AATT 4 cut(s) 59, 105, 1044, 1921
SsiI CCGC 2 cut(s) 694, 1339
SspMI CTAG 4 cut(s) 732, 1142, 1416, 1613
StyD4I CCNGG 6 cut(s) 553, 832, 922, 1080, 1437, 1984
TaiI ACGT 6 cut(s) 143, 195, 368, 568, 1462, 1668
TaqI TCGA 9 cut(s) 63, 396, 472, 601, 639, 908, 1668, 1676, 1715
TaqII GACCGA 1 cut(s) 103
TasI AATT 4 cut(s) 59, 105, 1044, 1921
TauI GCSGC 1 cut(s) 697
Tru1I TTAA 3 cut(s) 282, 783, 1152
Tru9I TTAA 3 cut(s) 282, 783, 1152
TscAI CASTG 7 cut(s) 81, 136, 439, 985, 1066, 1728, 1840
TseFI GTSAC 3 cut(s) 502, 878, 1879
TseI GCWGC 5 cut(s) 376, 813, 1146, 1256, 1464
Tsp45I GTSAC 3 cut(s) 502, 878, 1879
TspGWI ACGGA 1 cut(s) 856
TspRI CASTG 7 cut(s) 81, 136, 439, 985, 1066, 1728, 1840
Van91I CCANNNNNTGG 1 cut(s) 725
Vha464I CTTAAG 1 cut(s) 1151
VpaK11BI GGWCC 1 cut(s) 1078
XagI CCTNNNNNAGG 1 cut(s) 471
XapI RAATTY 1 cut(s) 59
XceI RCATGY 1 cut(s) 805
XhoI CTCGAG 2 cut(s) 471, 907
XmiI GTMKAC 1 cut(s) 686
XmnI GAANNNNTTC 1 cut(s) 1107
XspI CTAG 4 cut(s) 732, 1142, 1416, 1613
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.