Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0005775

Physical Location & Seq

Genomic Coordinates Forward (+)

12879464 .. 12881842

Gene Structure 2379 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g17130.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGGACACCCCCGAGAGGAACCAGATCGGTACCCCCAAGGCCAAATTTGAGGATTCTCCAGTCTTTAACTATATCAGTAGTCTTTCTCCTATCAAGCCGGTTAAGTCTGTGCACATTACTCAGACGTTCAGCTCCCTCAGTTTCGCTTCCCTTCCTTCCGTTTTCACTTCACCCCATGTCAGTTCTCACAAGGAATCCAGGTTCCTGAGGAGGCATAACCCTTCAGATCTGTCAAAACCTGAGTCCTCTCTGGAAAGCGGTAACAAAGTCTCTGTGAATGAAGATGCAGCCGAACTCTATATTAACGCAGAGGAGCTGCATGAGAATTGTGTACCAGGGGATCCTGTAGGAGAAACTTCTGCGGAACCACCTTGTGAGCACTCAAAGTTTGTGATTGAGCTGCCGCGAAATTTGAAATATGACTGTGGTAGCCCTGAATGTGACGCAACAACTTCTTGTGGTACTGAGGCAGGTTGTGAGTTGGAAGCGGCTGGCTTGTCAGCTCCACTCGTTCCATATGCTCAAAAGACATCTGAAAATGGTTCATCTGATGGTGAAGGTGAAGCACATCTACAGAACATATGCCAGAGTGGCCAAAGAAGAGAAGGGACAGGCTGTGATTGGGAGAGTTTGATCTCTGATGCTACCGACCTATTAATTTTCGATTCCCCCAATGCCTCAGAGGCTTTTAGGGGGATAATGCAGAATCCTCTGGACTCCGTAACAAGATTTTGTAATTCTCTTATGCCGCGACTCTCGCAGAATGACATTAATGATGAGCAAAACGTGCTAGTCCTTGATACAGTTGGTTCCGGAGAACAACCTGAAACTGAAGATCCTTCTTCTCAATATGGAGAAGCTAGTCAGCAGGAAGATACAGAACTGATGCAGGACCATTTGAATAGTTGTATGGTTAGCAATCAAATCGAGAAAGAAGACCAGTTCAATTGTAAGACTATTTTCTCTGTTTGTGCATTAGCCTGGTTTAAATTTGCATCGTGGCTTGCGAAGGCGCTGTCTGGATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0009934 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048444 GO:0048509 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051252 GO:0051302 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04218 map04218

Pfam Domains

Protein Families

TCR

Protein Analysis

343

Amino Acids

37.36

Weight (kDa)

4.49

Isoelectric Point (pI)

58.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005775)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22760 AT3G22760 AT3G22780 AT4G14770 AT4G14770 AT4G14770
fragaria_vesca	FvH4_4g00820 FvH4_4g00820 FvH4_4g00820
malus_domestica	MD13G1197800.v1.1 MD16G1197800.v1.1
prunus_persica	Prupe.1G019100_v2.0.a1 Prupe.1G019100_v2.0.a1
pyrus_communis	pycom13g17130 pycom13g17140 pycom16g16660
rosa_chinensis	RchiOBHm_Chr4g0387371
rosa_laevigata	RLG00000010126
rosa_multiflora	Rmu_sc0000013.1_g000028
rosa_roxburghii	Rroxscaffold_5G00334100
rosa_rugosa	Rorug03G0309000 Rorug03G0309000 Rorug03G0309000
rosa_samantha	Rh4AG015700 Rh4BG010500 Rh4CG016700 Rh4DG011800
rosa_wichuraiana	Rw4G000970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	461
Acc65I	GGTACC	1 cut(s)	29
AccB1I	GGYRCC	1 cut(s)	29
AccII	CGCG	2 cut(s)	406, 751
AccIII	TCCGGA	1 cut(s)	812
AciI	CCGC	5 cut(s)	258, 362, 404, 488, 749
AclWI	GGATC	3 cut(s)	335, 348, 830
AcoI	YGGCCR	1 cut(s)	592
AcsI	RAATTY	3 cut(s)	44, 409, 989
AcuI	CTGAAG	2 cut(s)	207, 852
AdeI	CACNNNGTG	1 cut(s)	374
AfaI	GTAC	3 cut(s)	31, 333, 463
AfiI	CCNNNNNNNGG	1 cut(s)	15
AgsI	TTSAA	3 cut(s)	415, 901, 946
AjnI	CCWGG	3 cut(s)	197, 334, 980
AloI	GAACNNNNNNTCC	2 cut(s)	185, 217
AluBI	AGCT	5 cut(s)	132, 316, 400, 503, 860
AluI	AGCT	5 cut(s)	132, 316, 400, 503, 860
Alw21I	GWGCWC	2 cut(s)	114, 381
Alw26I	GTCTC	1 cut(s)	274
Alw44I	GTGCAC	1 cut(s)	110
AlwI	GGATC	3 cut(s)	335, 348, 830
Ama87I	CYCGRG	1 cut(s)	11
Aor13HI	TCCGGA	1 cut(s)	812
AoxI	GGCC	2 cut(s)	39, 592
ApaLI	GTGCAC	1 cut(s)	110
ApeKI	GCWGC	3 cut(s)	287, 316, 400
ApoI	RAATTY	3 cut(s)	44, 409, 989
ArsI	GACNNNNNNTTYG	3 cut(s)	227, 259, 1001
AseI	ATTAAT	2 cut(s)	656, 771
Asp718I	GGTACC	1 cut(s)	29
AspLEI	GCGC	1 cut(s)	1015
AspS9I	GGNCC	1 cut(s)	892
AsuHPI	GGTGA	3 cut(s)	162, 566, 572
AvaI	CYCGRG	1 cut(s)	11
AvaII	GGWCC	1 cut(s)	892
AxyI	CCTNAGG	1 cut(s)	206
BaeGI	GKGCMC	1 cut(s)	114
BalI	TGGCCA	1 cut(s)	594
BamHI	GGATCC	1 cut(s)	340
BanI	GGYRCC	1 cut(s)	29
BarI	GAAGNNNNNNTAC	2 cut(s)	555, 587
BbsI	GAAGAC	1 cut(s)	942
Bbv12I	GWGCWC	2 cut(s)	114, 381
BbvI	GCAGC	3 cut(s)	299, 303, 387
BccI	CCATC	1 cut(s)	545
BcgI	CGANNNNNNTGC	2 cut(s)	907, 941
BciT130I	CCWGG	3 cut(s)	199, 336, 982
BcoDI	GTCTC	1 cut(s)	274
BfaI	CTAG	2 cut(s)	791, 861
BfmI	CTRYAG	2 cut(s)	345, 572
BfoI	RGCGCY	1 cut(s)	1016
BfuAI	ACCTGC	1 cut(s)	461
BglI	GCCNNNNNGGC	2 cut(s)	591, 683
BglII	AGATCT	1 cut(s)	226
BisI	GCNGC	6 cut(s)	288, 317, 401, 404, 489, 749
BlsI	GCNGC	6 cut(s)	289, 318, 402, 405, 490, 750
Bme1390I	CCNGG	3 cut(s)	199, 336, 982
Bme18I	GGWCC	1 cut(s)	892
BmeT110I	CYCGRG	1 cut(s)	11
BmgT120I	GGNCC	1 cut(s)	892
BmiI	GGNNCC	6 cut(s)	20, 31, 203, 342, 366, 811
BmrFI	CCNGG	3 cut(s)	199, 336, 982
BmsI	GCATC	4 cut(s)	274, 631, 876, 1004
BpiI	GAAGAC	1 cut(s)	942
BpmI	CTGGAG	1 cut(s)	42
BsaJI	CCNNGG	2 cut(s)	36, 335
BsaWI	WCCGGW	1 cut(s)	812
Bsc4I	CCNNNNNNNGG	1 cut(s)	15
Bse118I	RCCGGY	1 cut(s)	97
Bse1I	ACTGG	2 cut(s)	59, 940
Bse21I	CCTNAGG	1 cut(s)	206
BseAI	TCCGGA	1 cut(s)	812
BseBI	CCWGG	3 cut(s)	199, 336, 982
BseDI	CCNNGG	2 cut(s)	36, 335
BseLI	CCNNNNNNNGG	1 cut(s)	15
BseMII	CTCAG	6 cut(s)	134, 151, 197, 231, 456, 693
BseNI	ACTGG	2 cut(s)	59, 940
BseRI	GAGGAG	2 cut(s)	223, 326
BseSI	GKGCMC	1 cut(s)	114
BseXI	GCAGC	3 cut(s)	299, 303, 387
Bsh1236I	CGCG	2 cut(s)	406, 751
BshFI	GGCC	2 cut(s)	41, 594
BshNI	GGYRCC	1 cut(s)	29
BsiHKAI	GWGCWC	2 cut(s)	114, 381
BsiHKCI	CYCGRG	1 cut(s)	11
BsiSI	CCGG	2 cut(s)	98, 813
BslFI	GGGAC	1 cut(s)	622
BslI	CCNNNNNNNGG	1 cut(s)	15
BsmAI	GTCTC	1 cut(s)	274
BsmFI	GGGAC	1 cut(s)	622
BsnI	GGCC	2 cut(s)	41, 594
BsoBI	CYCGRG	1 cut(s)	11
Bsp1286I	GDGCHC	2 cut(s)	114, 381
Bsp13I	TCCGGA	1 cut(s)	812
Bsp143I	GATC	5 cut(s)	24, 226, 340, 633, 835
BspACI	CCGC	5 cut(s)	258, 362, 404, 488, 749
BspANI	GGCC	2 cut(s)	41, 594
BspCNI	CTCAG	6 cut(s)	133, 150, 198, 232, 457, 692
BspEI	TCCGGA	1 cut(s)	812
BspFNI	CGCG	2 cut(s)	406, 751
BspLI	GGNNCC	6 cut(s)	20, 31, 203, 342, 366, 811
BspMI	ACCTGC	1 cut(s)	461
BspPI	GGATC	3 cut(s)	335, 348, 830
BspT107I	GGYRCC	1 cut(s)	29
BsrFI	RCCGGY	1 cut(s)	97
BsrI	ACTGG	2 cut(s)	59, 940
BssAI	RCCGGY	1 cut(s)	97
BssECI	CCNNGG	2 cut(s)	36, 335
BssMI	GATC	5 cut(s)	24, 226, 340, 633, 835
BssT1I	CCWWGG	1 cut(s)	36
Bst2UI	CCWGG	3 cut(s)	199, 336, 982
Bst4CI	ACNGT	2 cut(s)	425, 805
Bst6I	CTCTTC	1 cut(s)	595
BstAPI	GCANNNNNTGC	1 cut(s)	787
BstC8I	GCNNGC	2 cut(s)	493, 1005
BstDEI	CTNAG	6 cut(s)	120, 137, 206, 240, 465, 679
BstFNI	CGCG	2 cut(s)	406, 751
BstH2I	RGCGCY	1 cut(s)	1016
BstHHI	GCGC	1 cut(s)	1015
BstKTI	GATC	5 cut(s)	27, 229, 343, 636, 838
BstMAI	GTCTC	1 cut(s)	274
BstMBI	GATC	5 cut(s)	24, 226, 340, 633, 835
BstMWI	GCNNNNNNNGC	4 cut(s)	591, 683, 757, 787
BstNI	CCWGG	3 cut(s)	199, 336, 982
BstSCI	CCNGG	3 cut(s)	197, 334, 980
BstSFI	CTRYAG	2 cut(s)	345, 572
BstSLI	GKGCMC	1 cut(s)	114
BstUI	CGCG	2 cut(s)	406, 751
BstV1I	GCAGC	3 cut(s)	299, 303, 387
BstV2I	GAAGAC	1 cut(s)	942
BstX2I	RGATCY	3 cut(s)	226, 340, 835
BstYI	RGATCY	3 cut(s)	226, 340, 835
Bsu36I	CCTNAGG	1 cut(s)	206
BsuRI	GGCC	2 cut(s)	41, 594
BveI	ACCTGC	1 cut(s)	461
Cac8I	GCNNGC	2 cut(s)	493, 1005
CfoI	GCGC	1 cut(s)	1015
Cfr10I	RCCGGY	1 cut(s)	97
Cfr13I	GGNCC	1 cut(s)	892
CseI	GACGC	1 cut(s)	452
Csp6I	GTAC	3 cut(s)	30, 332, 462
CviAII	CATG	2 cut(s)	176, 320
CviQI	GTAC	3 cut(s)	30, 332, 462
DdeI	CTNAG	6 cut(s)	120, 137, 206, 240, 465, 679
DpnI	GATC	5 cut(s)	26, 228, 342, 635, 837
DpnII	GATC	5 cut(s)	24, 226, 340, 633, 835
DraI	TTTAAA	1 cut(s)	988
DraIII	CACNNNGTG	1 cut(s)	374
EaeI	YGGCCR	1 cut(s)	592
Eam1104I	CTCTTC	1 cut(s)	595
EarI	CTCTTC	1 cut(s)	595
Eco130I	CCWWGG	1 cut(s)	36
Eco47I	GGWCC	1 cut(s)	892
Eco57I	CTGAAG	2 cut(s)	207, 852
Eco81I	CCTNAGG	1 cut(s)	206
Eco88I	CYCGRG	1 cut(s)	11
EcoRII	CCWGG	3 cut(s)	197, 334, 980
EcoT14I	CCWWGG	1 cut(s)	36
ErhI	CCWWGG	1 cut(s)	36
FaeI	CATG	2 cut(s)	179, 323
FaqI	GGGAC	1 cut(s)	622
FatI	CATG	2 cut(s)	175, 319
FauNDI	CATATG	2 cut(s)	517, 581
Fnu4HI	GCNGC	6 cut(s)	288, 317, 401, 404, 489, 749
Fsp4HI	GCNGC	6 cut(s)	288, 317, 401, 404, 489, 749
FspBI	CTAG	2 cut(s)	791, 861
GlaI	GCGC	1 cut(s)	1014
GluI	GCNGC	6 cut(s)	288, 317, 401, 404, 489, 749
GsuI	CTGGAG	1 cut(s)	42
HaeII	RGCGCY	1 cut(s)	1016
HaeIII	GGCC	2 cut(s)	41, 594
HapII	CCGG	2 cut(s)	98, 813
HgaI	GACGC	1 cut(s)	452
HhaI	GCGC	1 cut(s)	1015
Hin1II	CATG	2 cut(s)	179, 323
Hin6I	GCGC	1 cut(s)	1013
HinP1I	GCGC	1 cut(s)	1013
HinfI	GANTC	7 cut(s)	53, 194, 242, 665, 706, 716, 753
HpaII	CCGG	2 cut(s)	98, 813
HphI	GGTGA	3 cut(s)	162, 566, 572
Hpy166II	GTNNAC	2 cut(s)	112, 332
Hpy188I	TCNGA	6 cut(s)	123, 226, 535, 550, 640, 682
Hpy188III	TCNNGA	6 cut(s)	205, 251, 713, 813, 928, 1020
Hpy8I	GTNNAC	2 cut(s)	112, 332
HpyAV	CCTTC	7 cut(s)	161, 165, 231, 551, 599, 849, 1003
HpyCH4III	ACNGT	2 cut(s)	425, 805
HpyCH4IV	ACGT	2 cut(s)	125, 786
HpyCH4V	TGCA	7 cut(s)	112, 287, 319, 703, 889, 974, 995
HpyF10VI	GCNNNNNNNGC	4 cut(s)	591, 683, 757, 787
HpyF3I	CTNAG	6 cut(s)	120, 137, 206, 240, 465, 679
HpySE526I	ACGT	2 cut(s)	125, 786
Hsp92II	CATG	2 cut(s)	179, 323
HspAI	GCGC	1 cut(s)	1013
Kpn2I	TCCGGA	1 cut(s)	812
KpnI	GGTACC	1 cut(s)	33
Kzo9I	GATC	5 cut(s)	24, 226, 340, 633, 835
LmnI	GCTCC	3 cut(s)	137, 313, 508
Lsp1109I	GCAGC	3 cut(s)	299, 303, 387
LweI	GCATC	4 cut(s)	274, 631, 876, 1004
MaeI	CTAG	2 cut(s)	791, 861
MaeII	ACGT	2 cut(s)	125, 786
MaeIII	GTNAC	3 cut(s)	260, 440, 721
MalI	GATC	5 cut(s)	26, 228, 342, 635, 837
MboI	GATC	5 cut(s)	24, 226, 340, 633, 835
MboII	GAAGA	6 cut(s)	293, 612, 834, 845, 884, 947
MfeI	CAATTG	1 cut(s)	946
MflI	RGATCY	3 cut(s)	226, 340, 835
MhlI	GDGCHC	2 cut(s)	114, 381
MlsI	TGGCCA	1 cut(s)	594
MluCI	AATT	7 cut(s)	44, 325, 409, 657, 736, 946, 989
MluNI	TGGCCA	1 cut(s)	594
MlyI	GAGTC	3 cut(s)	251, 710, 747
MmeI	TCCRAC	1 cut(s)	462
Mox20I	TGGCCA	1 cut(s)	594
MroI	TCCGGA	1 cut(s)	812
MscI	TGGCCA	1 cut(s)	594
MseI	TTAA	6 cut(s)	66, 102, 303, 656, 771, 987
Msp20I	TGGCCA	1 cut(s)	594
MspI	CCGG	2 cut(s)	98, 813
MspR9I	CCNGG	3 cut(s)	199, 336, 982
MunI	CAATTG	1 cut(s)	946
MvaI	CCWGG	3 cut(s)	199, 336, 982
MvnI	CGCG	2 cut(s)	406, 751
MwoI	GCNNNNNNNGC	4 cut(s)	591, 683, 757, 787
NdeI	CATATG	2 cut(s)	517, 581
NdeII	GATC	5 cut(s)	24, 226, 340, 633, 835
NlaIII	CATG	2 cut(s)	179, 323
NlaIV	GGNNCC	6 cut(s)	20, 31, 203, 342, 366, 811
NmuCI	GTSAC	1 cut(s)	440
PcsI	WCGNNNNNNNCGW	1 cut(s)	1004
PfeI	GAWTC	4 cut(s)	53, 194, 665, 706
PkrI	GCNGC	6 cut(s)	289, 318, 402, 405, 490, 750
PleI	GAGTC	3 cut(s)	250, 710, 747
PpsI	GAGTC	3 cut(s)	250, 710, 747
PshBI	ATTAAT	2 cut(s)	656, 771
Psp6I	CCWGG	3 cut(s)	197, 334, 980
PspGI	CCWGG	3 cut(s)	197, 334, 980
PspN4I	GGNNCC	6 cut(s)	20, 31, 203, 342, 366, 811
PspPI	GGNCC	1 cut(s)	892
PsuI	RGATCY	3 cut(s)	226, 340, 835
RsaI	GTAC	3 cut(s)	31, 333, 463
RsaNI	GTAC	3 cut(s)	30, 332, 462
SaqAI	TTAA	6 cut(s)	66, 102, 303, 656, 771, 987
SatI	GCNGC	6 cut(s)	288, 317, 401, 404, 489, 749
Sau3AI	GATC	5 cut(s)	24, 226, 340, 633, 835
Sau96I	GGNCC	1 cut(s)	892
SchI	GAGTC	3 cut(s)	251, 710, 747
ScrFI	CCNGG	3 cut(s)	199, 336, 982
SduI	GDGCHC	2 cut(s)	114, 381
SfaNI	GCATC	4 cut(s)	274, 631, 876, 1004
SfcI	CTRYAG	2 cut(s)	345, 572
SinI	GGWCC	1 cut(s)	892
Sse9I	AATT	7 cut(s)	44, 325, 409, 657, 736, 946, 989
SsiI	CCGC	5 cut(s)	258, 362, 404, 488, 749
SspMI	CTAG	2 cut(s)	791, 861
StyD4I	CCNGG	3 cut(s)	197, 334, 980
StyI	CCWWGG	1 cut(s)	36
TaaI	ACNGT	2 cut(s)	425, 805
TaiI	ACGT	2 cut(s)	128, 789
TaqI	TCGA	2 cut(s)	663, 927
TasI	AATT	7 cut(s)	44, 325, 409, 657, 736, 946, 989
TauI	GCSGC	3 cut(s)	406, 491, 751
TfiI	GAWTC	4 cut(s)	53, 194, 665, 706
Tru1I	TTAA	6 cut(s)	66, 102, 303, 656, 771, 987
Tru9I	TTAA	6 cut(s)	66, 102, 303, 656, 771, 987
TseFI	GTSAC	1 cut(s)	440
TseI	GCWGC	3 cut(s)	287, 316, 400
Tsp45I	GTSAC	1 cut(s)	440
TspDTI	ATGAA	2 cut(s)	294, 534
TspGWI	ACGGA	2 cut(s)	148, 709
VneI	GTGCAC	1 cut(s)	110
VpaK11BI	GGWCC	1 cut(s)	892
VspI	ATTAAT	2 cut(s)	656, 771
XapI	RAATTY	3 cut(s)	44, 409, 989
XspI	CTAG	2 cut(s)	791, 861

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.