Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0005775

Physical Location & Seq

Genomic Coordinates Forward (+)

12554137 .. 12555454

Gene Structure 1318 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g16660.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGATGGAGTGGCTGAGTTGCCCTGCATCACTGCATGATTCTCCTGTGTTTAACTATATCAATAGTCTTTCTCCTATCAAGCCTGTGAAGTCTGTTCACATTACTCAGACGTTCAGCTCACTCAGTTTCGCATCCCTCCCTTCCGTCTTCACTTCGCCCCATGTCAGCTCTCACAAGGAATCCAGGCATAACCCTTCTGATCCGTCAAAACCCGAGTCCTCTCTTGAAAGCGGAAATAAAGTCTCTGCGAATGAAGATGCGGCTGAACTCTGTATTAACTCAGCAGAGTTACATGAGGATTGTGTTCCAGGGGATTCTATTGGAGAAGCTTCTGTTGAGCCATCTAGTGAGCACTCAAAGTTTGTAATTGAGCTGCCGCGAAATTTGAAATATGACTCTGGTAGCCCTGAGTGTGGAGCAACAACTCGTGGTACTGAGGCAGGTTGTGAGTCGGAAGCGGCTGACTTGTCAGCTCCGCTCGTTCCATATGTTCAAAAGACCTCTGAAAATGGTTCTTCCGATGATGGAGCACATCTACAGAACATATGCCAGAGTGAGCAAAGAAACGAATTGACAGGCTGTGATTGGGAGAATTTGATCGATCTGATGCTAGCGACCTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0009934 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048444 GO:0048509 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051252 GO:0051302 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04218 map04218

Pfam Domains

Protein Families

TCR

Protein Analysis

208

Amino Acids

22.29

Weight (kDa)

4.57

Isoelectric Point (pI)

65.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005775)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22760 AT3G22760 AT3G22780 AT4G14770 AT4G14770 AT4G14770
fragaria_vesca	FvH4_4g00820 FvH4_4g00820 FvH4_4g00820
malus_domestica	MD13G1197800.v1.1 MD16G1197800.v1.1
prunus_persica	Prupe.1G019100_v2.0.a1 Prupe.1G019100_v2.0.a1
pyrus_communis	pycom13g17130 pycom13g17140 pycom16g16660
rosa_chinensis	RchiOBHm_Chr4g0387371
rosa_laevigata	RLG00000010126
rosa_multiflora	Rmu_sc0000013.1_g000028
rosa_roxburghii	Rroxscaffold_5G00334100
rosa_rugosa	Rorug03G0309000 Rorug03G0309000 Rorug03G0309000
rosa_samantha	Rh4AG015700 Rh4BG010500 Rh4CG016700 Rh4DG011800
rosa_wichuraiana	Rw4G000970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	431
AccBSI	CCGCTC	1 cut(s)	478
AccII	CGCG	1 cut(s)	379
AciI	CCGC	5 cut(s)	231, 260, 377, 458, 476
AclWI	GGATC	1 cut(s)	194
AcsI	RAATTY	2 cut(s)	382, 592
AfaI	GTAC	1 cut(s)	433
AfiI	CCNNNNNNNGG	1 cut(s)	413
AgsI	TTSAA	3 cut(s)	227, 388, 494
AjnI	CCWGG	2 cut(s)	182, 307
AluBI	AGCT	5 cut(s)	117, 168, 329, 373, 473
AluI	AGCT	5 cut(s)	117, 168, 329, 373, 473
Alw21I	GWGCWC	2 cut(s)	354, 532
Alw26I	GTCTC	1 cut(s)	247
AlwI	GGATC	1 cut(s)	194
Ama87I	CYCGRG	1 cut(s)	212
ApeKI	GCWGC	1 cut(s)	373
ApoI	RAATTY	2 cut(s)	382, 592
ArsI	GACNNNNNNTTYG	2 cut(s)	200, 232
AsuNHI	GCTAGC	1 cut(s)	610
AvaI	CYCGRG	1 cut(s)	212
BauI	CACGAG	1 cut(s)	426
BbsI	GAAGAC	1 cut(s)	139
Bbv12I	GWGCWC	2 cut(s)	354, 532
BbvI	GCAGC	1 cut(s)	360
BccI	CCATC	2 cut(s)	349, 518
BciT130I	CCWGG	2 cut(s)	184, 309
BcoDI	GTCTC	1 cut(s)	247
BfaI	CTAG	2 cut(s)	345, 611
BfmI	CTRYAG	1 cut(s)	536
BfuAI	ACCTGC	1 cut(s)	431
BisI	GCNGC	4 cut(s)	261, 374, 377, 459
BlsI	GCNGC	4 cut(s)	262, 375, 378, 460
Bme1390I	CCNGG	2 cut(s)	184, 309
BmeT110I	CYCGRG	1 cut(s)	212
BmrFI	CCNGG	2 cut(s)	184, 309
BmsI	GCATC	4 cut(s)	35, 140, 247, 597
BmtI	GCTAGC	1 cut(s)	614
BpiI	GAAGAC	1 cut(s)	139
Bsa29I	ATCGAT	1 cut(s)	600
BsaJI	CCNNGG	1 cut(s)	308
Bsc4I	CCNNNNNNNGG	1 cut(s)	413
BseBI	CCWGG	2 cut(s)	184, 309
BseCI	ATCGAT	1 cut(s)	600
BseDI	CCNNGG	1 cut(s)	308
BseGI	GGATG	1 cut(s)	131
BseLI	CCNNNNNNNGG	1 cut(s)	413
BseMII	CTCAG	6 cut(s)	5, 119, 136, 294, 399, 426
BseXI	GCAGC	1 cut(s)	360
Bsh1236I	CGCG	1 cut(s)	379
BshVI	ATCGAT	1 cut(s)	600
BsiHKAI	GWGCWC	2 cut(s)	354, 532
BsiHKCI	CYCGRG	1 cut(s)	212
BslI	CCNNNNNNNGG	1 cut(s)	413
BsmAI	GTCTC	1 cut(s)	247
BsoBI	CYCGRG	1 cut(s)	212
Bsp1286I	GDGCHC	2 cut(s)	354, 532
Bsp143I	GATC	3 cut(s)	199, 597, 601
BspACI	CCGC	5 cut(s)	231, 260, 377, 458, 476
BspCNI	CTCAG	6 cut(s)	6, 118, 135, 293, 400, 427
BspDI	ATCGAT	1 cut(s)	600
BspFNI	CGCG	1 cut(s)	379
BspMI	ACCTGC	1 cut(s)	431
BspOI	GCTAGC	1 cut(s)	614
BspPI	GGATC	1 cut(s)	194
BsrBI	CCGCTC	1 cut(s)	478
BssECI	CCNNGG	1 cut(s)	308
BssMI	GATC	3 cut(s)	199, 597, 601
BssSI	CACGAG	1 cut(s)	426
Bst2BI	CACGAG	1 cut(s)	426
Bst2UI	CCWGG	2 cut(s)	184, 309
BstC8I	GCNNGC	1 cut(s)	612
BstDEI	CTNAG	6 cut(s)	14, 105, 122, 280, 408, 435
BstF5I	GGATG	1 cut(s)	131
BstFNI	CGCG	1 cut(s)	379
BstKTI	GATC	3 cut(s)	202, 600, 604
BstMAI	GTCTC	1 cut(s)	247
BstMBI	GATC	3 cut(s)	199, 597, 601
BstNI	CCWGG	2 cut(s)	184, 309
BstSCI	CCNGG	2 cut(s)	182, 307
BstSFI	CTRYAG	1 cut(s)	536
BstUI	CGCG	1 cut(s)	379
BstV1I	GCAGC	1 cut(s)	360
BstV2I	GAAGAC	1 cut(s)	139
Bsu15I	ATCGAT	1 cut(s)	600
BsuTUI	ATCGAT	1 cut(s)	600
BtsCI	GGATG	1 cut(s)	131
BtsI	GCAGTG	1 cut(s)	29
BtsIMutI	CAGTG	1 cut(s)	29
BveI	ACCTGC	1 cut(s)	431
Cac8I	GCNNGC	1 cut(s)	612
ClaI	ATCGAT	1 cut(s)	600
Csp6I	GTAC	1 cut(s)	432
CviAII	CATG	3 cut(s)	35, 161, 293
CviQI	GTAC	1 cut(s)	432
DdeI	CTNAG	6 cut(s)	14, 105, 122, 280, 408, 435
DpnI	GATC	3 cut(s)	201, 599, 603
DpnII	GATC	3 cut(s)	199, 597, 601
Eco88I	CYCGRG	1 cut(s)	212
EcoRII	CCWGG	2 cut(s)	182, 307
FaeI	CATG	3 cut(s)	38, 164, 296
FatI	CATG	3 cut(s)	34, 160, 292
FauNDI	CATATG	2 cut(s)	487, 545
Fnu4HI	GCNGC	4 cut(s)	261, 374, 377, 459
FokI	GGATG	1 cut(s)	118
Fsp4HI	GCNGC	4 cut(s)	261, 374, 377, 459
FspBI	CTAG	2 cut(s)	345, 611
GluI	GCNGC	4 cut(s)	261, 374, 377, 459
Hin1II	CATG	3 cut(s)	38, 164, 296
HindIII	AAGCTT	1 cut(s)	327
HinfI	GANTC	6 cut(s)	38, 179, 215, 314, 395, 449
Hpy166II	GTNNAC	1 cut(s)	97
Hpy188I	TCNGA	6 cut(s)	108, 199, 454, 505, 520, 606
Hpy188III	TCNNGA	1 cut(s)	224
Hpy8I	GTNNAC	1 cut(s)	97
HpyAV	CCTTC	2 cut(s)	150, 204
HpyCH4IV	ACGT	1 cut(s)	110
HpyCH4V	TGCA	2 cut(s)	26, 34
HpyF3I	CTNAG	6 cut(s)	14, 105, 122, 280, 408, 435
HpySE526I	ACGT	1 cut(s)	110
Hsp92II	CATG	3 cut(s)	38, 164, 296
Kzo9I	GATC	3 cut(s)	199, 597, 601
LmnI	GCTCC	3 cut(s)	416, 478, 527
Lsp1109I	GCAGC	1 cut(s)	360
LweI	GCATC	4 cut(s)	35, 140, 247, 597
MaeI	CTAG	2 cut(s)	345, 611
MaeII	ACGT	1 cut(s)	110
MaeIII	GTNAC	1 cut(s)	288
MalI	GATC	3 cut(s)	201, 599, 603
MbiI	CCGCTC	1 cut(s)	478
MboI	GATC	3 cut(s)	199, 597, 601
MboII	GAAGA	3 cut(s)	139, 266, 507
MhlI	GDGCHC	2 cut(s)	354, 532
MluCI	AATT	4 cut(s)	366, 382, 569, 592
MlyI	GAGTC	3 cut(s)	224, 389, 458
MmeI	TCCRAC	1 cut(s)	432
MnlI	CCTC	5 cut(s)	146, 229, 289, 430, 511
MseI	TTAA	3 cut(s)	51, 276, 622
MspR9I	CCNGG	2 cut(s)	184, 309
MvaI	CCWGG	2 cut(s)	184, 309
MvnI	CGCG	1 cut(s)	379
NdeI	CATATG	2 cut(s)	487, 545
NdeII	GATC	3 cut(s)	199, 597, 601
NheI	GCTAGC	1 cut(s)	610
NlaIII	CATG	3 cut(s)	38, 164, 296
PfeI	GAWTC	3 cut(s)	38, 179, 314
PkrI	GCNGC	4 cut(s)	262, 375, 378, 460
PleI	GAGTC	3 cut(s)	223, 389, 457
PpsI	GAGTC	3 cut(s)	223, 389, 457
Psp6I	CCWGG	2 cut(s)	182, 307
PspGI	CCWGG	2 cut(s)	182, 307
RsaI	GTAC	1 cut(s)	433
RsaNI	GTAC	1 cut(s)	432
SaqAI	TTAA	3 cut(s)	51, 276, 622
SatI	GCNGC	4 cut(s)	261, 374, 377, 459
Sau3AI	GATC	3 cut(s)	199, 597, 601
SchI	GAGTC	3 cut(s)	224, 389, 458
ScrFI	CCNGG	2 cut(s)	184, 309
SduI	GDGCHC	2 cut(s)	354, 532
SetI	ASST	9 cut(s)	113, 119, 170, 331, 375, 445, 475, 503, 620
SfaNI	GCATC	4 cut(s)	35, 140, 247, 597
SfcI	CTRYAG	1 cut(s)	536
Sse9I	AATT	4 cut(s)	366, 382, 569, 592
SsiI	CCGC	5 cut(s)	231, 260, 377, 458, 476
SspMI	CTAG	2 cut(s)	345, 611
StyD4I	CCNGG	2 cut(s)	182, 307
TaiI	ACGT	1 cut(s)	113
TaqI	TCGA	1 cut(s)	600
TasI	AATT	4 cut(s)	366, 382, 569, 592
TauI	GCSGC	3 cut(s)	263, 379, 461
TfiI	GAWTC	3 cut(s)	38, 179, 314
Tru1I	TTAA	3 cut(s)	51, 276, 622
Tru9I	TTAA	3 cut(s)	51, 276, 622
TscAI	CASTG	1 cut(s)	36
TseI	GCWGC	1 cut(s)	373
TspDTI	ATGAA	1 cut(s)	267
TspGWI	ACGGA	2 cut(s)	133, 192
TspRI	CASTG	1 cut(s)	36
XapI	RAATTY	2 cut(s)	382, 592
XspI	CTAG	2 cut(s)	345, 611

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.