AT3G22850

Aluminium induced protein with YGL and LRDR motifs

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0012461
Physical Location & Seq
Forward (+)
8088810 .. 8090470
1661 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G22850.1

Sequence Viewer

Length: 747 bp
ATGTTGGCGATTTTCGACAAGAACGTGGCGAAAACACCCGAGGCTCTTCAGGGTCAAGAGGGTGGATCGGTTTGTGCTCTTAAAGATAGGTTCTTGCCGAACCATTTCTCCTCTGTTTATCCTGGTGCTGTCACCATCAATCTCGGATCTTCTGGTTTCATTGCTTGCTCTCTCGAGAAACAGAACCCTCTTCTTCCCAGATTGTTTGCTGTGGTGGATGATATGTTCTGCATATTCCAAGGACATATAGAGAACGTTCCAATTCTTAAGCAACAATATGGACTAACCAAAACAGCTACAGAGGTTACCATTGTGATTGAAGCCTACAGAACTCTAAGAGATCGTGGTCCGTATTCAGCTGAACAAGTTGTTAGAGATTTTCAAGGCAAATTCGGGTTTATGCTCTATGACTGCTCCACACAAAATGTCTTCCTTGCCGGGGATGTAGATGGGAGTGTTCCTCTCTACTGGGGAACCGATGCTGAAGGACATCTTGTTGTTTCTGATGATGTTGAGACTGTCAAGAAGGGTTGTGGTAAATCCTTTGCGCCATTCCCTAAAGGATGTTTCTTTACCTCATCTGGAGGTTTGAGGAGCTATGAGCATCCATCAAATGAGTTAAAGCCGGTACCAAGGGTAGACAGTTCGGGTGAGGTTTGCGGTGTAACGTTTAAAGTGGATTCTGAGGCCAAGAAAGAAGCGATGCCTAGGGTTGGGAGTGTTCAGAATTGGTCTAAACAAATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3700

Protein Analysis

248

Amino Acids

27.11

Weight (kDa)

5.85

Isoelectric Point (pI)

31.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3700 PF12481 2 - 226 6.6e-111 Aluminium induced protein
GATase_7 PF13537 74 - 168 2e-09 Glutamine amidotransferase domain
GATase_6 PF13522 74 - 168 1.7e-07 Glutamine amidotransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012461)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22850 AT5G43830
fragaria_vesca FvH4_4g01560
malus_domestica MD13G1201000.v1.1 MD16G1200200.v1.1
prunus_persica Prupe.1G022400_v2.0.a1 Prupe.1G022400_v2.0.a1
pyrus_communis pycom13g17440 pycom16g16940
rosa_chinensis RchiOBHm_Chr4g0388131
rosa_laevigata RLG00000010078
rosa_multiflora Rmu_sc0002509.1_g000004
rosa_roxburghii Rroxscaffold_5G00334680
rosa_rugosa Rorug03G0315000
rosa_samantha Rh4AG020800 Rh4BG015200 Rh4CG021400 Rh4DG016000
rosa_wichuraiana Rw4G001390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 628
AccB1I GGYRCC 1 cut(s) 628
AccI GTMKAC 1 cut(s) 639
AciI CCGC 1 cut(s) 660
AclI AACGTT 2 cut(s) 255, 668
AclWI GGATC 2 cut(s) 73, 154
AcsI RAATTY 1 cut(s) 389
AcuI CTGAAG 2 cut(s) 32, 504
AfaI GTAC 1 cut(s) 630
AfiI CCNNNNNNNGG 2 cut(s) 439, 713
AflII CTTAAG 1 cut(s) 266
AgsI TTSAA 2 cut(s) 320, 383
AjnI CCWGG 1 cut(s) 121
AloI GAACNNNNNNTCC 4 cut(s) 92, 124, 209, 241
AluBI AGCT 3 cut(s) 296, 359, 597
AluI AGCT 3 cut(s) 296, 359, 597
Alw21I GWGCWC 1 cut(s) 79
Alw26I GTCTC 1 cut(s) 509
AlwI GGATC 2 cut(s) 73, 154
Ama87I CYCGRG 2 cut(s) 38, 173
AoxI GGCC 1 cut(s) 687
ApoI RAATTY 1 cut(s) 389
Asp700I GAANNNNTTC 1 cut(s) 104
Asp718I GGTACC 1 cut(s) 628
AspA2I CCTAGG 1 cut(s) 707
AspLEI GCGC 1 cut(s) 550
AspS9I GGNCC 1 cut(s) 347
AsuC2I CCSGG 1 cut(s) 439
AsuHPI GGTGA 2 cut(s) 124, 662
AvaI CYCGRG 2 cut(s) 38, 173
AvaII GGWCC 1 cut(s) 347
AvrII CCTAGG 1 cut(s) 707
BanI GGYRCC 1 cut(s) 628
BbsI GAAGAC 1 cut(s) 421
Bbv12I GWGCWC 1 cut(s) 79
BccI CCATC 3 cut(s) 143, 443, 616
BciT130I CCWGG 1 cut(s) 123
BcnI CCSGG 1 cut(s) 439
BcoDI GTCTC 1 cut(s) 509
BfaI CTAG 1 cut(s) 708
BfmI CTRYAG 2 cut(s) 297, 325
BfrI CTTAAG 1 cut(s) 266
BlnI CCTAGG 1 cut(s) 707
Bme1390I CCNGG 2 cut(s) 123, 439
Bme18I GGWCC 1 cut(s) 347
BmeT110I CYCGRG 2 cut(s) 38, 173
BmgT120I GGNCC 1 cut(s) 347
BmiI GGNNCC 2 cut(s) 475, 630
BmrFI CCNGG 2 cut(s) 123, 439
BmrI ACTGGG 1 cut(s) 478
BmsI GCATC 3 cut(s) 469, 613, 693
BmuI ACTGGG 1 cut(s) 478
BpiI GAAGAC 1 cut(s) 421
BplI GAGNNNNNCTC 2 cut(s) 445, 477
BpmI CTGGAG 1 cut(s) 603
BpuMI CCSGG 1 cut(s) 439
BsaJI CCNNGG 5 cut(s) 39, 238, 438, 632, 707
BsaXI ACNNNNNCTCC 2 cut(s) 92, 122
Bsc4I CCNNNNNNNGG 2 cut(s) 439, 713
Bse118I RCCGGY 1 cut(s) 625
Bse1I ACTGG 1 cut(s) 473
Bse3DI GCAATG 1 cut(s) 159
BseBI CCWGG 1 cut(s) 123
BseDI CCNNGG 5 cut(s) 39, 238, 438, 632, 707
BseGI GGATG 4 cut(s) 223, 448, 569, 604
BseLI CCNNNNNNNGG 2 cut(s) 439, 713
BseMI GCAATG 1 cut(s) 159
BseMII CTCAG 1 cut(s) 675
BseNI ACTGG 1 cut(s) 473
BseRI GAGGAG 2 cut(s) 100, 607
BshFI GGCC 1 cut(s) 689
BshNI GGYRCC 1 cut(s) 628
BsiHKAI GWGCWC 1 cut(s) 79
BsiHKCI CYCGRG 2 cut(s) 38, 173
BsiSI CCGG 2 cut(s) 438, 626
BslI CCNNNNNNNGG 2 cut(s) 439, 713
BsmAI GTCTC 1 cut(s) 509
BsnI GGCC 1 cut(s) 689
BsoBI CYCGRG 2 cut(s) 38, 173
Bsp1286I GDGCHC 1 cut(s) 79
Bsp143I GATC 3 cut(s) 65, 146, 340
BspACI CCGC 1 cut(s) 660
BspANI GGCC 1 cut(s) 689
BspCNI CTCAG 1 cut(s) 676
BspLI GGNNCC 2 cut(s) 475, 630
BspPI GGATC 2 cut(s) 73, 154
BspQI GCTCTTC 1 cut(s) 51
BspT107I GGYRCC 1 cut(s) 628
BspTI CTTAAG 1 cut(s) 266
BsrDI GCAATG 1 cut(s) 159
BsrFI RCCGGY 1 cut(s) 625
BsrI ACTGG 1 cut(s) 473
BssAI RCCGGY 1 cut(s) 625
BssECI CCNNGG 5 cut(s) 39, 238, 438, 632, 707
BssMI GATC 3 cut(s) 65, 146, 340
BssT1I CCWWGG 3 cut(s) 238, 632, 707
Bst2UI CCWGG 1 cut(s) 123
Bst4CI ACNGT 2 cut(s) 520, 644
Bst6I CTCTTC 2 cut(s) 51, 195
BstAFI CTTAAG 1 cut(s) 266
BstC8I GCNNGC 1 cut(s) 166
BstDEI CTNAG 2 cut(s) 335, 684
BstEII GGTNACC 1 cut(s) 304
BstF5I GGATG 4 cut(s) 223, 448, 569, 604
BstHHI GCGC 1 cut(s) 550
BstKTI GATC 3 cut(s) 68, 149, 343
BstMAI GTCTC 1 cut(s) 509
BstMBI GATC 3 cut(s) 65, 146, 340
BstNI CCWGG 1 cut(s) 123
BstPI GGTNACC 1 cut(s) 304
BstSCI CCNGG 2 cut(s) 121, 437
BstSFI CTRYAG 2 cut(s) 297, 325
BstV2I GAAGAC 1 cut(s) 421
BstX2I RGATCY 1 cut(s) 146
BstYI RGATCY 1 cut(s) 146
BsuRI GGCC 1 cut(s) 689
BtgZI GCGATG 1 cut(s) 716
BtsCI GGATG 4 cut(s) 223, 448, 569, 604
Cac8I GCNNGC 1 cut(s) 166
CfoI GCGC 1 cut(s) 550
Cfr10I RCCGGY 1 cut(s) 625
Cfr13I GGNCC 1 cut(s) 347
Csp6I GTAC 1 cut(s) 629
CviJI RGCY 7 cut(s) 44, 296, 323, 359, 597, 625, 689
CviKI_1 RGCY 7 cut(s) 44, 296, 323, 359, 597, 625, 689
CviQI GTAC 1 cut(s) 629
DdeI CTNAG 2 cut(s) 335, 684
DpnI GATC 3 cut(s) 67, 148, 342
DpnII GATC 3 cut(s) 65, 146, 340
DraI TTTAAA 1 cut(s) 673
Eam1104I CTCTTC 2 cut(s) 51, 195
EarI CTCTTC 2 cut(s) 51, 195
Eco130I CCWWGG 3 cut(s) 238, 632, 707
Eco47I GGWCC 1 cut(s) 347
Eco57I CTGAAG 2 cut(s) 32, 504
Eco88I CYCGRG 2 cut(s) 38, 173
Eco91I GGTNACC 1 cut(s) 304
EcoO65I GGTNACC 1 cut(s) 304
EcoRII CCWGG 1 cut(s) 121
EcoT14I CCWWGG 3 cut(s) 238, 632, 707
ErhI CCWWGG 3 cut(s) 238, 632, 707
FaiI YATR 8 cut(s) 224, 233, 246, 248, 279, 401, 408, 600
FalI AAGNNNNNCTT 2 cut(s) 477, 509
FblI GTMKAC 1 cut(s) 639
FokI GGATG 4 cut(s) 230, 455, 576, 591
FspBI CTAG 1 cut(s) 708
GlaI GCGC 1 cut(s) 549
GsuI CTGGAG 1 cut(s) 603
HaeIII GGCC 1 cut(s) 689
HapII CCGG 2 cut(s) 438, 626
HhaI GCGC 1 cut(s) 550
Hin6I GCGC 1 cut(s) 548
HinP1I GCGC 1 cut(s) 548
HinfI GANTC 1 cut(s) 680
HpaII CCGG 2 cut(s) 438, 626
HphI GGTGA 2 cut(s) 124, 662
Hpy166II GTNNAC 1 cut(s) 640
Hpy188I TCNGA 5 cut(s) 146, 505, 685, 726, 746
Hpy188III TCNNGA 5 cut(s) 56, 173, 175, 523, 582
Hpy8I GTNNAC 1 cut(s) 640
HpyAV CCTTC 2 cut(s) 479, 520
HpyCH4III ACNGT 2 cut(s) 520, 644
HpyCH4IV ACGT 3 cut(s) 24, 255, 668
HpyCH4V TGCA 1 cut(s) 231
HpyF3I CTNAG 2 cut(s) 335, 684
HpySE526I ACGT 3 cut(s) 24, 255, 668
HspAI GCGC 1 cut(s) 548
KpnI GGTACC 1 cut(s) 632
Kzo9I GATC 3 cut(s) 65, 146, 340
LguI GCTCTTC 1 cut(s) 51
LmnI GCTCC 2 cut(s) 419, 594
LpnPI CCDG 9 cut(s) 35, 108, 135, 138, 211, 451, 454, 567, 639
LweI GCATC 3 cut(s) 469, 613, 693
MaeI CTAG 1 cut(s) 708
MaeII ACGT 3 cut(s) 24, 255, 668
MaeIII GTNAC 3 cut(s) 130, 304, 664
MalI GATC 3 cut(s) 67, 148, 342
MboI GATC 3 cut(s) 65, 146, 340
MboII GAAGA 5 cut(s) 38, 141, 182, 185, 421
MflI RGATCY 1 cut(s) 146
MhlI GDGCHC 1 cut(s) 79
MluCI AATT 3 cut(s) 261, 389, 727
MroXI GAANNNNTTC 1 cut(s) 104
MseI TTAA 4 cut(s) 81, 267, 620, 672
MspA1I CMGCKG 1 cut(s) 359
MspCI CTTAAG 1 cut(s) 266
MspI CCGG 2 cut(s) 438, 626
MspR9I CCNGG 2 cut(s) 123, 439
MvaI CCWGG 1 cut(s) 123
NciI CCSGG 1 cut(s) 439
NdeII GATC 3 cut(s) 65, 146, 340
NlaIV GGNNCC 2 cut(s) 475, 630
NmuCI GTSAC 1 cut(s) 130
PaeR7I CTCGAG 1 cut(s) 173
PciSI GCTCTTC 1 cut(s) 51
PcsI WCGNNNNNNNCGW 1 cut(s) 21
PdmI GAANNNNTTC 1 cut(s) 104
PfeI GAWTC 1 cut(s) 680
Psp1406I AACGTT 2 cut(s) 255, 668
Psp6I CCWGG 1 cut(s) 121
PspEI GGTNACC 1 cut(s) 304
PspGI CCWGG 1 cut(s) 121
PspN4I GGNNCC 2 cut(s) 475, 630
PspPI GGNCC 1 cut(s) 347
PsuI RGATCY 1 cut(s) 146
PvuII CAGCTG 1 cut(s) 359
RsaI GTAC 1 cut(s) 630
RsaNI GTAC 1 cut(s) 629
SapI GCTCTTC 1 cut(s) 51
SaqAI TTAA 4 cut(s) 81, 267, 620, 672
Sau3AI GATC 3 cut(s) 65, 146, 340
Sau96I GGNCC 1 cut(s) 347
ScrFI CCNGG 2 cut(s) 123, 439
SduI GDGCHC 1 cut(s) 79
SfaNI GCATC 3 cut(s) 469, 613, 693
SfcI CTRYAG 2 cut(s) 297, 325
Sfr274I CTCGAG 1 cut(s) 173
SinI GGWCC 1 cut(s) 347
SlaI CTCGAG 1 cut(s) 173
SmlI CTYRAG 2 cut(s) 173, 266
SmoI CTYRAG 2 cut(s) 173, 266
Sse9I AATT 3 cut(s) 261, 389, 727
SsiI CCGC 1 cut(s) 660
SspMI CTAG 1 cut(s) 708
StyD4I CCNGG 2 cut(s) 121, 437
StyI CCWWGG 3 cut(s) 238, 632, 707
TaaI ACNGT 2 cut(s) 520, 644
TaiI ACGT 3 cut(s) 27, 258, 671
TaqI TCGA 2 cut(s) 15, 174
TasI AATT 3 cut(s) 261, 389, 727
TfiI GAWTC 1 cut(s) 680
Tru1I TTAA 4 cut(s) 81, 267, 620, 672
Tru9I TTAA 4 cut(s) 81, 267, 620, 672
TseFI GTSAC 1 cut(s) 130
Tsp45I GTSAC 1 cut(s) 130
TspDTI ATGAA 1 cut(s) 148
TspGWI ACGGA 1 cut(s) 339
Vha464I CTTAAG 1 cut(s) 266
VpaK11BI GGWCC 1 cut(s) 347
XapI RAATTY 1 cut(s) 389
XhoI CTCGAG 1 cut(s) 173
XmaJI CCTAGG 1 cut(s) 707
XmiI GTMKAC 1 cut(s) 639
XmnI GAANNNNTTC 1 cut(s) 104
XspI CTAG 1 cut(s) 708
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.