Rroxscaffold_5G00334680

Stem-specific protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0012461
Physical Location & Seq
Forward (+)
1926949 .. 1929205
2257 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00334680.1

Sequence Viewer

Length: 348 bp
ATGACACTACTTCAAAGGTCTCGTTTGTGGCTGCTGATGTTGATGGCAATGTTCCTTTTTTTCTGGGGAACTGATTCTGAAGGCAATCTTGTTATTGCTGATGATGCAGAAGTTGTGAAGAAGGGCTGTGAGAAGTCATTTGCACCATTTCCTAAAGGATGTTTCTTCACATCCTCTGGAGGCCTGAGGAGTTTTGAGCACCCCCATAATGAGTTGAAGGCAGTGCCAAGGGTGGATAGTTCCGGTCAGGTGTGCGGTGCAACTTTCAAGGTTGATGCTGAGGCTAGGAAGGAGTCTAGTGGAATGCCCAGAGTTGGGAGTGCTGCTAACTGGTCTTCAGATTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3700

Protein Analysis

115

Amino Acids

12.67

Weight (kDa)

6.72

Isoelectric Point (pI)

40.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3700 PF12481 20 - 91 2.5e-36 Aluminium induced protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012461)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22850 AT5G43830
fragaria_vesca FvH4_4g01560
malus_domestica MD13G1201000.v1.1 MD16G1200200.v1.1
prunus_persica Prupe.1G022400_v2.0.a1 Prupe.1G022400_v2.0.a1
pyrus_communis pycom13g17440 pycom16g16940
rosa_chinensis RchiOBHm_Chr4g0388131
rosa_laevigata RLG00000010078
rosa_multiflora Rmu_sc0002509.1_g000004
rosa_roxburghii Rroxscaffold_5G00334680
rosa_rugosa Rorug03G0315000
rosa_samantha Rh4AG020800 Rh4BG015200 Rh4CG021400 Rh4DG016000
rosa_wichuraiana Rw4G001390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 255
AcuI CTGAAG 2 cut(s) 99, 321
AfiI CCNNNNNNNGG 2 cut(s) 314, 315
AgsI TTSAA 3 cut(s) 14, 217, 268
Alw21I GWGCWC 1 cut(s) 201
Alw26I GTCTC 1 cut(s) 24
AoxI GGCC 1 cut(s) 181
ApeKI GCWGC 2 cut(s) 31, 323
Asp700I GAANNNNTTC 1 cut(s) 73
AxyI CCTNAGG 1 cut(s) 185
BbsI GAAGAC 1 cut(s) 327
Bbv12I GWGCWC 1 cut(s) 201
BbvCI CCTCAGC 1 cut(s) 279
BbvI GCAGC 2 cut(s) 18, 310
BccI CCATC 1 cut(s) 37
BcoDI GTCTC 1 cut(s) 24
BfaI CTAG 2 cut(s) 285, 297
BisI GCNGC 2 cut(s) 32, 324
BlsI GCNGC 2 cut(s) 33, 325
BmsI GCATC 2 cut(s) 94, 265
BpiI GAAGAC 1 cut(s) 327
BpmI CTGGAG 1 cut(s) 198
Bpu10I CCTNAGC 1 cut(s) 279
BsaI GGTCTC 1 cut(s) 24
BsaJI CCNNGG 1 cut(s) 227
BsaWI WCCGGW 1 cut(s) 242
Bsc4I CCNNNNNNNGG 2 cut(s) 314, 315
Bse1I ACTGG 1 cut(s) 335
Bse21I CCTNAGG 1 cut(s) 185
Bse3DI GCAATG 1 cut(s) 54
BseDI CCNNGG 1 cut(s) 227
BseGI GGATG 2 cut(s) 164, 170
BseLI CCNNNNNNNGG 2 cut(s) 314, 315
BseMI GCAATG 1 cut(s) 54
BseMII CTCAG 2 cut(s) 176, 270
BseNI ACTGG 1 cut(s) 335
BseRI GAGGAG 1 cut(s) 202
BseXI GCAGC 2 cut(s) 18, 310
BshFI GGCC 1 cut(s) 183
BsiHKAI GWGCWC 1 cut(s) 201
BsiSI CCGG 1 cut(s) 243
BslI CCNNNNNNNGG 2 cut(s) 314, 315
BsmAI GTCTC 1 cut(s) 24
BsmI GAATGC 1 cut(s) 309
BsnI GGCC 1 cut(s) 183
Bso31I GGTCTC 1 cut(s) 24
Bsp1286I GDGCHC 1 cut(s) 201
BspACI CCGC 1 cut(s) 255
BspANI GGCC 1 cut(s) 183
BspCNI CTCAG 2 cut(s) 177, 271
BspTNI GGTCTC 1 cut(s) 24
BsrDI GCAATG 1 cut(s) 54
BsrI ACTGG 1 cut(s) 335
BssECI CCNNGG 1 cut(s) 227
BssT1I CCWWGG 1 cut(s) 227
BstDEI CTNAG 2 cut(s) 185, 279
BstF5I GGATG 2 cut(s) 164, 170
BstMAI GTCTC 1 cut(s) 24
BstMWI GCNNNNNNNGC 1 cut(s) 104
BstV1I GCAGC 2 cut(s) 18, 310
BstV2I GAAGAC 1 cut(s) 327
Bsu36I CCTNAGG 1 cut(s) 185
BsuRI GGCC 1 cut(s) 183
BtsCI GGATG 2 cut(s) 164, 170
BtsI GCAGTG 1 cut(s) 228
BtsIMutI CAGTG 1 cut(s) 228
CviJI RGCY 4 cut(s) 31, 126, 183, 284
CviKI_1 RGCY 4 cut(s) 31, 126, 183, 284
DdeI CTNAG 2 cut(s) 185, 279
Eco130I CCWWGG 1 cut(s) 227
Eco147I AGGCCT 1 cut(s) 183
Eco31I GGTCTC 1 cut(s) 24
Eco57I CTGAAG 2 cut(s) 99, 321
Eco81I CCTNAGG 1 cut(s) 185
EcoT14I CCWWGG 1 cut(s) 227
ErhI CCWWGG 1 cut(s) 227
FaiI YATR 1 cut(s) 207
FalI AAGNNNNNCTT 2 cut(s) 72, 104
Fnu4HI GCNGC 2 cut(s) 32, 324
FokI GGATG 2 cut(s) 157, 171
Fsp4HI GCNGC 2 cut(s) 32, 324
FspBI CTAG 2 cut(s) 285, 297
GluI GCNGC 2 cut(s) 32, 324
GsuI CTGGAG 1 cut(s) 198
HaeIII GGCC 1 cut(s) 183
HapII CCGG 1 cut(s) 243
HinfI GANTC 2 cut(s) 74, 293
HpaII CCGG 1 cut(s) 243
Hpy188I TCNGA 2 cut(s) 79, 340
Hpy188III TCNNGA 1 cut(s) 177
HpyAV CCTTC 4 cut(s) 74, 115, 211, 283
HpyCH4V TGCA 3 cut(s) 107, 143, 260
HpyF10VI GCNNNNNNNGC 1 cut(s) 104
HpyF3I CTNAG 2 cut(s) 185, 279
LpnPI CCDG 7 cut(s) 49, 162, 197, 233, 256, 316, 322
Lsp1109I GCAGC 2 cut(s) 18, 310
LweI GCATC 2 cut(s) 94, 265
MaeI CTAG 2 cut(s) 285, 297
MboII GAAGA 3 cut(s) 130, 157, 327
MhlI GDGCHC 1 cut(s) 201
MlyI GAGTC 1 cut(s) 302
MnlI CCTC 4 cut(s) 173, 180, 184, 274
MroXI GAANNNNTTC 1 cut(s) 73
MspI CCGG 1 cut(s) 243
Mva1269I GAATGC 1 cut(s) 309
MwoI GCNNNNNNNGC 1 cut(s) 104
PceI AGGCCT 1 cut(s) 183
PctI GAATGC 1 cut(s) 309
PdmI GAANNNNTTC 1 cut(s) 73
PfeI GAWTC 1 cut(s) 74
PkrI GCNGC 2 cut(s) 33, 325
PleI GAGTC 1 cut(s) 301
PpsI GAGTC 1 cut(s) 301
SatI GCNGC 2 cut(s) 32, 324
SchI GAGTC 1 cut(s) 302
SduI GDGCHC 1 cut(s) 201
SetI ASST 3 cut(s) 20, 252, 273
SfaNI GCATC 2 cut(s) 94, 265
SseBI AGGCCT 1 cut(s) 183
SsiI CCGC 1 cut(s) 255
SspMI CTAG 2 cut(s) 285, 297
StuI AGGCCT 1 cut(s) 183
StyI CCWWGG 1 cut(s) 227
TfiI GAWTC 1 cut(s) 74
TscAI CASTG 1 cut(s) 228
TseI GCWGC 2 cut(s) 31, 323
TspRI CASTG 1 cut(s) 228
XmnI GAANNNNTTC 1 cut(s) 73
XspI CTAG 2 cut(s) 285, 297
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.