pycom16g16940

Stem-specific protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0012461
Physical Location & Seq
Forward (+)
12940795 .. 12942996
2202 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g16940.2

Sequence Viewer

Length: 753 bp
ATGTTGGCTGTGTTCGACAAGTCGGTCGCCAAATGCCCGGAGGCGCTGCAGAGCCCTCGGTCCGGATCAGCCTCCGCCCTGAAAGATGGGTTTCTGGCGCAGCAGTTTGCTTCTGTGCATCCTTCCTCCGTCACTGTCAATCTTGGCGCTTCTGGTCTAATCGCCTACTCTCTCGACAGACAGAACCCTCTTCTTCCAAGGTTGTTTGCAGTTGTGGACGACATTTTCTGCCTGTTCCAAGGCCACATCGAGAATGTTGCTCTTCTTAAGCAACAATATGGATTGAACAAGACAGCCAATGAGGTGATCATTGTTATTGAAGCTTTCAGGACTCTGAGAGACCGAGGTCCTTATCCTGCCGACCAGGTTGTGAGAGATATCCAAGGGAAGTTTGCATTTGTTCTCTTTGACAGTGCTTCCAAAGCCACTTTTATAGCTACTGATCCTGATGGGAATGTTCCGTTCTTCTGGGGAACTGATTCTGAAGGCCATCTTGTTCTTTCAGAGGATTCAGAAGTTGTGAAGAAGGGCTGCGGGAATTCTTTTGCACCATTTCCTAAAGGTTGTTTTTTCACTTCCTCTGGAGGCTTGAGGAGTTATGAGCATCCCCACAATGAGTTGAAGGCGGTGCCACGTGTGGATAGCTCGGGTGAAATGTGCGGTGCAAATTTCAAGGTCGATGCTGATACTAAGAAGGAATCGAGTGGCATCCCAAGAGTCGGGAGTGCTGCCAACTGGTCGTCAAATTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3700

Protein Analysis

251

Amino Acids

26.99

Weight (kDa)

5.96

Isoelectric Point (pI)

36.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012461)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22850 AT5G43830
fragaria_vesca FvH4_4g01560
malus_domestica MD13G1201000.v1.1 MD16G1200200.v1.1
prunus_persica Prupe.1G022400_v2.0.a1 Prupe.1G022400_v2.0.a1
pyrus_communis pycom13g17440 pycom16g16940
rosa_chinensis RchiOBHm_Chr4g0388131
rosa_laevigata RLG00000010078
rosa_multiflora Rmu_sc0002509.1_g000004
rosa_roxburghii Rroxscaffold_5G00334680
rosa_rugosa Rorug03G0315000
rosa_samantha Rh4AG020800 Rh4BG015200 Rh4CG021400 Rh4DG016000
rosa_wichuraiana Rw4G001390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 23
AccB1I GGYRCC 1 cut(s) 628
AccIII TCCGGA 1 cut(s) 62
AciI CCGC 4 cut(s) 75, 534, 626, 660
AclWI GGATC 2 cut(s) 73, 437
AcsI RAATTY 2 cut(s) 538, 667
AcuI CTGAAG 1 cut(s) 504
AcvI CACGTG 1 cut(s) 635
AfiI CCNNNNNNNGG 2 cut(s) 62, 719
AflII CTTAAG 1 cut(s) 266
AflIII ACRYGT 1 cut(s) 634
AgsI TTSAA 4 cut(s) 286, 320, 622, 673
AjnI CCWGG 1 cut(s) 363
AluBI AGCT 3 cut(s) 323, 437, 645
AluI AGCT 3 cut(s) 323, 437, 645
Alw26I GTCTC 1 cut(s) 333
AlwI GGATC 2 cut(s) 73, 437
Ama87I CYCGRG 1 cut(s) 646
Aor13HI TCCGGA 1 cut(s) 62
AoxI GGCC 2 cut(s) 241, 487
ApeKI GCWGC 4 cut(s) 46, 100, 531, 728
ApoI RAATTY 2 cut(s) 538, 667
Asp700I GAANNNNTTC 1 cut(s) 478
AspLEI GCGC 3 cut(s) 46, 100, 149
AspS9I GGNCC 2 cut(s) 60, 347
AsuC2I CCSGG 1 cut(s) 38
AsuHPI GGTGA 2 cut(s) 316, 662
AvaI CYCGRG 1 cut(s) 646
AvaII GGWCC 2 cut(s) 60, 347
BanI GGYRCC 1 cut(s) 628
BanII GRGCYC 1 cut(s) 56
BbrPI CACGTG 1 cut(s) 635
BbvI GCAGC 4 cut(s) 33, 112, 518, 715
BccI CCATC 3 cut(s) 80, 443, 498
BcgI CGANNNNNNTGC 4 cut(s) 38, 72, 239, 273
BciT130I CCWGG 1 cut(s) 365
BclI TGATCA 1 cut(s) 306
BcnI CCSGG 1 cut(s) 38
BcoDI GTCTC 1 cut(s) 333
BfmI CTRYAG 1 cut(s) 47
BfoI RGCGCY 2 cut(s) 47, 150
BfrI CTTAAG 1 cut(s) 266
BisI GCNGC 4 cut(s) 47, 101, 532, 729
BlsI GCNGC 4 cut(s) 48, 102, 533, 730
Bme1390I CCNGG 2 cut(s) 38, 365
Bme18I GGWCC 2 cut(s) 60, 347
BmeT110I CYCGRG 1 cut(s) 646
BmgT120I GGNCC 2 cut(s) 60, 347
BmiI GGNNCC 1 cut(s) 630
BmrFI CCNGG 2 cut(s) 38, 365
BmsI GCATC 4 cut(s) 127, 613, 670, 717
BoxI GACNNNNGTC 1 cut(s) 345
BpmI CTGGAG 1 cut(s) 603
BpuEI CTTGAG 1 cut(s) 610
BpuMI CCSGG 1 cut(s) 38
BsaAI YACGTR 1 cut(s) 635
BsaI GGTCTC 1 cut(s) 333
BsaJI CCNNGG 5 cut(s) 56, 197, 238, 343, 382
BsaWI WCCGGW 1 cut(s) 62
Bsc4I CCNNNNNNNGG 2 cut(s) 62, 719
Bse1I ACTGG 1 cut(s) 740
BseAI TCCGGA 1 cut(s) 62
BseBI CCWGG 1 cut(s) 365
BseDI CCNNGG 5 cut(s) 56, 197, 238, 343, 382
BseGI GGATG 3 cut(s) 118, 604, 708
BseLI CCNNNNNNNGG 2 cut(s) 62, 719
BseMII CTCAG 1 cut(s) 326
BseNI ACTGG 1 cut(s) 740
BseRI GAGGAG 1 cut(s) 607
BseXI GCAGC 4 cut(s) 33, 112, 518, 715
Bsh1285I CGRYCG 1 cut(s) 27
BshFI GGCC 2 cut(s) 243, 489
BshNI GGYRCC 1 cut(s) 628
BsiEI CGRYCG 1 cut(s) 27
BsiHKCI CYCGRG 1 cut(s) 646
BsiSI CCGG 2 cut(s) 38, 63
BslI CCNNNNNNNGG 2 cut(s) 62, 719
BsmAI GTCTC 1 cut(s) 333
BsnI GGCC 2 cut(s) 243, 489
Bso31I GGTCTC 1 cut(s) 333
BsoBI CYCGRG 1 cut(s) 646
Bsp1286I GDGCHC 1 cut(s) 56
Bsp13I TCCGGA 1 cut(s) 62
Bsp143I GATC 3 cut(s) 65, 306, 442
BspACI CCGC 4 cut(s) 75, 534, 626, 660
BspANI GGCC 2 cut(s) 243, 489
BspCNI CTCAG 1 cut(s) 327
BspEI TCCGGA 1 cut(s) 62
BspLI GGNNCC 1 cut(s) 630
BspMAI CTGCAG 1 cut(s) 51
BspPI GGATC 2 cut(s) 73, 437
BspQI GCTCTTC 1 cut(s) 267
BspT107I GGYRCC 1 cut(s) 628
BspTI CTTAAG 1 cut(s) 266
BspTNI GGTCTC 1 cut(s) 333
BsrI ACTGG 1 cut(s) 740
BssECI CCNNGG 5 cut(s) 56, 197, 238, 343, 382
BssMI GATC 3 cut(s) 65, 306, 442
BssT1I CCWWGG 3 cut(s) 197, 238, 382
Bst2UI CCWGG 1 cut(s) 365
Bst4CI ACNGT 2 cut(s) 136, 413
Bst6I CTCTTC 2 cut(s) 195, 267
BstAFI CTTAAG 1 cut(s) 266
BstBAI YACGTR 1 cut(s) 635
BstDEI CTNAG 2 cut(s) 335, 690
BstF5I GGATG 3 cut(s) 118, 604, 708
BstH2I RGCGCY 2 cut(s) 47, 150
BstHHI GCGC 3 cut(s) 46, 100, 149
BstKTI GATC 3 cut(s) 68, 309, 445
BstMAI GTCTC 1 cut(s) 333
BstMBI GATC 3 cut(s) 65, 306, 442
BstMCI CGRYCG 1 cut(s) 27
BstMWI GCNNNNNNNGC 1 cut(s) 422
BstNI CCWGG 1 cut(s) 365
BstPAI GACNNNNGTC 1 cut(s) 345
BstSCI CCNGG 2 cut(s) 36, 363
BstSFI CTRYAG 1 cut(s) 47
BstV1I GCAGC 4 cut(s) 33, 112, 518, 715
BsuRI GGCC 2 cut(s) 243, 489
BtsCI GGATG 3 cut(s) 118, 604, 708
BtsIMutI CAGTG 2 cut(s) 132, 418
CfoI GCGC 3 cut(s) 46, 100, 149
Cfr13I GGNCC 2 cut(s) 60, 347
CpoI CGGWCCG 1 cut(s) 60
CsiI ACCWGGT 1 cut(s) 363
CspI CGGWCCG 1 cut(s) 60
DdeI CTNAG 2 cut(s) 335, 690
DpnI GATC 3 cut(s) 67, 308, 444
DpnII GATC 3 cut(s) 65, 306, 442
DrdI GACNNNNNNGTC 1 cut(s) 23
DseDI GACNNNNNNGTC 1 cut(s) 23
Eam1104I CTCTTC 2 cut(s) 195, 267
EarI CTCTTC 2 cut(s) 195, 267
EciI GGCGGA 1 cut(s) 64
Eco130I CCWWGG 3 cut(s) 197, 238, 382
Eco24I GRGCYC 1 cut(s) 56
Eco31I GGTCTC 1 cut(s) 333
Eco32I GATATC 1 cut(s) 379
Eco47I GGWCC 2 cut(s) 60, 347
Eco57I CTGAAG 1 cut(s) 504
Eco72I CACGTG 1 cut(s) 635
Eco88I CYCGRG 1 cut(s) 646
EcoO109I RGGNCCY 1 cut(s) 347
EcoRI GAATTC 1 cut(s) 538
EcoRII CCWGG 1 cut(s) 363
EcoRV GATATC 1 cut(s) 379
EcoT14I CCWWGG 3 cut(s) 197, 238, 382
EcoT38I GRGCYC 1 cut(s) 56
ErhI CCWWGG 3 cut(s) 197, 238, 382
FaiI YATR 3 cut(s) 279, 434, 600
FalI AAGNNNNNCTT 2 cut(s) 477, 509
FauI CCCGC 1 cut(s) 527
FbaI TGATCA 1 cut(s) 306
Fnu4HI GCNGC 4 cut(s) 47, 101, 532, 729
FokI GGATG 3 cut(s) 105, 591, 695
FriOI GRGCYC 1 cut(s) 56
Fsp4HI GCNGC 4 cut(s) 47, 101, 532, 729
GlaI GCGC 3 cut(s) 45, 99, 148
GluI GCNGC 4 cut(s) 47, 101, 532, 729
GsuI CTGGAG 1 cut(s) 603
HaeII RGCGCY 2 cut(s) 47, 150
HaeIII GGCC 2 cut(s) 243, 489
HapII CCGG 2 cut(s) 38, 63
HhaI GCGC 3 cut(s) 46, 100, 149
Hin6I GCGC 3 cut(s) 44, 98, 147
HinP1I GCGC 3 cut(s) 44, 98, 147
HindIII AAGCTT 1 cut(s) 321
HinfI GANTC 5 cut(s) 331, 479, 509, 698, 717
HpaII CCGG 2 cut(s) 38, 63
HphI GGTGA 2 cut(s) 316, 662
Hpy166II GTNNAC 1 cut(s) 217
Hpy188I TCNGA 4 cut(s) 336, 484, 505, 514
Hpy188III TCNNGA 7 cut(s) 63, 173, 250, 328, 446, 582, 721
Hpy8I GTNNAC 1 cut(s) 217
HpyAV CCTTC 5 cut(s) 132, 479, 520, 616, 688
HpyCH4III ACNGT 2 cut(s) 136, 413
HpyCH4IV ACGT 1 cut(s) 634
HpyCH4V TGCA 6 cut(s) 49, 118, 209, 395, 548, 665
HpyF10VI GCNNNNNNNGC 1 cut(s) 422
HpyF3I CTNAG 2 cut(s) 335, 690
HpySE526I ACGT 1 cut(s) 634
HspAI GCGC 3 cut(s) 44, 98, 147
Kpn2I TCCGGA 1 cut(s) 62
Ksp22I TGATCA 1 cut(s) 306
Kzo9I GATC 3 cut(s) 65, 306, 442
LguI GCTCTTC 1 cut(s) 267
Lsp1109I GCAGC 4 cut(s) 33, 112, 518, 715
LweI GCATC 4 cut(s) 127, 613, 670, 717
MabI ACCWGGT 1 cut(s) 363
MaeII ACGT 1 cut(s) 634
MaeIII GTNAC 1 cut(s) 130
MalI GATC 3 cut(s) 67, 308, 444
MboI GATC 3 cut(s) 65, 306, 442
MboII GAAGA 5 cut(s) 182, 185, 254, 457, 535
MhlI GDGCHC 1 cut(s) 56
MluCI AATT 3 cut(s) 538, 667, 745
MlyI GAGTC 2 cut(s) 325, 726
MroI TCCGGA 1 cut(s) 62
MroXI GAANNNNTTC 1 cut(s) 478
MseI TTAA 1 cut(s) 267
MspCI CTTAAG 1 cut(s) 266
MspI CCGG 2 cut(s) 38, 63
MspR9I CCNGG 2 cut(s) 38, 365
MvaI CCWGG 1 cut(s) 365
MwoI GCNNNNNNNGC 1 cut(s) 422
NciI CCSGG 1 cut(s) 38
NdeII GATC 3 cut(s) 65, 306, 442
NlaIV GGNNCC 1 cut(s) 630
NmuCI GTSAC 1 cut(s) 130
PciSI GCTCTTC 1 cut(s) 267
PdmI GAANNNNTTC 1 cut(s) 478
PfeI GAWTC 3 cut(s) 479, 509, 698
PkrI GCNGC 4 cut(s) 48, 102, 533, 730
PleI GAGTC 2 cut(s) 325, 725
PmaCI CACGTG 1 cut(s) 635
PmlI CACGTG 1 cut(s) 635
PpsI GAGTC 2 cut(s) 325, 725
Ppu21I YACGTR 1 cut(s) 635
PpuMI RGGWCCY 1 cut(s) 347
PshAI GACNNNNGTC 1 cut(s) 345
Psp5II RGGWCCY 1 cut(s) 347
Psp6I CCWGG 1 cut(s) 363
PspCI CACGTG 1 cut(s) 635
PspGI CCWGG 1 cut(s) 363
PspN4I GGNNCC 1 cut(s) 630
PspPI GGNCC 2 cut(s) 60, 347
PspPPI RGGWCCY 1 cut(s) 347
PstI CTGCAG 1 cut(s) 51
Rsr2I CGGWCCG 1 cut(s) 60
RsrII CGGWCCG 1 cut(s) 60
SapI GCTCTTC 1 cut(s) 267
SaqAI TTAA 1 cut(s) 267
SatI GCNGC 4 cut(s) 47, 101, 532, 729
Sau3AI GATC 3 cut(s) 65, 306, 442
Sau96I GGNCC 2 cut(s) 60, 347
SchI GAGTC 2 cut(s) 325, 726
ScrFI CCNGG 2 cut(s) 38, 365
SduI GDGCHC 1 cut(s) 56
SexAI ACCWGGT 1 cut(s) 363
SfaNI GCATC 4 cut(s) 127, 613, 670, 717
SfcI CTRYAG 1 cut(s) 47
SinI GGWCC 2 cut(s) 60, 347
SmlI CTYRAG 2 cut(s) 266, 589
SmoI CTYRAG 2 cut(s) 266, 589
Sse9I AATT 3 cut(s) 538, 667, 745
SsiI CCGC 4 cut(s) 75, 534, 626, 660
StyD4I CCNGG 2 cut(s) 36, 363
StyI CCWWGG 3 cut(s) 197, 238, 382
TaaI ACNGT 2 cut(s) 136, 413
TaiI ACGT 1 cut(s) 637
TaqI TCGA 5 cut(s) 15, 174, 249, 678, 701
TaqII GACCGA 3 cut(s) 13, 48, 357
TasI AATT 3 cut(s) 538, 667, 745
TfiI GAWTC 3 cut(s) 479, 509, 698
Tru1I TTAA 1 cut(s) 267
Tru9I TTAA 1 cut(s) 267
TscAI CASTG 2 cut(s) 139, 418
TseFI GTSAC 1 cut(s) 130
TseI GCWGC 4 cut(s) 46, 100, 531, 728
Tsp45I GTSAC 1 cut(s) 130
TspGWI ACGGA 2 cut(s) 118, 450
TspRI CASTG 2 cut(s) 139, 418
Vha464I CTTAAG 1 cut(s) 266
VpaK11BI GGWCC 2 cut(s) 60, 347
XapI RAATTY 2 cut(s) 538, 667
XmnI GAANNNNTTC 1 cut(s) 478
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.