AT5G43830

Aluminium induced protein with YGL and LRDR motifs

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0012461
Physical Location & Seq
Reverse (-)
17622256 .. 17624359
2104 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G43830.1

Sequence Viewer

Length: 756 bp
ATGCTCGCTGTGTTTGAGAAGACGGTGGCGAATAGCCCTGAAGCTTTACAGAGTCCACACTCGTCTGAGTCTGCTTTCGCGTTGAAAGATGGATCTCTCGCTACTCATTTCGCTTCCGTGAATCCCAACTCCGTCACGCTTAACTTCGGATCTTCTGGATTTGTTGCTTACTCTCTTGATAATCCTGATCCTCGTGTTCCTAGATTATTTGCTGTGGTGGATGATATTTTCTGTCTCTTCCAAGGACACATTGAGAACCTACCGTTTCTGAAGCAGCAGTATGGACTGAACAAAATCACAAACGAGGCCATCATTGTGATTGAGGCTTACAGGACACTACGTGATCGAGGTCCTTACCCTGTGGACAAAGTTGTTAGAGATTTCCATGGAAAGTTTGCGTTTATACTCTTCGATAGCGTCAAGAAAACTGTCTTTGCTGCTGCTGACGCCGATGGGAGTGTGCCGTTCTTCTGGGGAACCGATGCTGAAGGGCACCTTGTGTTTTCTGATAACACCGAGATGGTGAAGAAAGGTTGCGCCAAATCTTATGGTCCTTTCCCTAAAGGTTGTTTCTTTACGTCGTCGGGTGGATTGAGGAGCTTTGAGCACCCAAAGAACGAGTTGAAGCCAGTGCCGAGAGTGGACAGCTCAGGTGACGTGTGTGGTGCAACCTTCAAGGTTGACGCTGAGACTAAGAGAGAGGGTACCAAAATGCCTAGAGTCGATAGCTCCCAAAATTGGGCCGGTCATATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3700

Protein Analysis

251

Amino Acids

27.51

Weight (kDa)

6.38

Isoelectric Point (pI)

36.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3700 PF12481 2 - 227 2.4e-113 Aluminium induced protein
GATase_7 PF13537 76 - 171 3.5e-08 Glutamine amidotransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012461)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22850 AT5G43830
fragaria_vesca FvH4_4g01560
malus_domestica MD13G1201000.v1.1 MD16G1200200.v1.1
prunus_persica Prupe.1G022400_v2.0.a1 Prupe.1G022400_v2.0.a1
pyrus_communis pycom13g17440 pycom16g16940
rosa_chinensis RchiOBHm_Chr4g0388131
rosa_laevigata RLG00000010078
rosa_multiflora Rmu_sc0002509.1_g000004
rosa_roxburghii Rroxscaffold_5G00334680
rosa_rugosa Rorug03G0315000
rosa_samantha Rh4AG020800 Rh4BG015200 Rh4CG021400 Rh4DG016000
rosa_wichuraiana Rw4G001390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 704
AccB1I GGYRCC 2 cut(s) 492, 704
AccII CGCG 1 cut(s) 80
AclWI GGATC 3 cut(s) 100, 157, 182
AcuI CTGAAG 3 cut(s) 60, 290, 507
AcyI GRCGYC 1 cut(s) 447
AdeI CACNNNGTG 2 cut(s) 341, 499
AfaI GTAC 1 cut(s) 706
AfiI CCNNNNNNNGG 2 cut(s) 738, 739
AflIII ACRYGT 1 cut(s) 657
AgsI TTSAA 3 cut(s) 85, 625, 676
AjiI CACGTC 1 cut(s) 658
AluBI AGCT 4 cut(s) 44, 600, 648, 729
AluI AGCT 4 cut(s) 44, 600, 648, 729
Alw21I GWGCWC 1 cut(s) 609
Alw26I GTCTC 2 cut(s) 239, 683
AlwI GGATC 3 cut(s) 100, 157, 182
AoxI GGCC 2 cut(s) 306, 741
ApeKI GCWGC 3 cut(s) 274, 437, 440
Asp718I GGTACC 1 cut(s) 704
AspLEI GCGC 1 cut(s) 539
AspS9I GGNCC 3 cut(s) 350, 551, 741
AsuHPI GGTGA 2 cut(s) 535, 665
AvaII GGWCC 2 cut(s) 350, 551
BaeGI GKGCMC 1 cut(s) 495
BanI GGYRCC 2 cut(s) 492, 704
BauI CACGAG 1 cut(s) 192
BbsI GAAGAC 1 cut(s) 26
Bbv12I GWGCWC 1 cut(s) 609
BbvI GCAGC 3 cut(s) 286, 424, 427
BccI CCATC 4 cut(s) 83, 317, 446, 514
BceAI ACGGC 1 cut(s) 448
BcoDI GTCTC 2 cut(s) 239, 683
BfaI CTAG 2 cut(s) 201, 717
BisI GCNGC 3 cut(s) 275, 438, 441
BlsI GCNGC 3 cut(s) 276, 439, 442
Bme18I GGWCC 2 cut(s) 350, 551
BmgBI CACGTC 1 cut(s) 658
BmgT120I GGNCC 3 cut(s) 350, 551, 741
BmiI GGNNCC 3 cut(s) 478, 494, 706
BmsI GCATC 1 cut(s) 472
BpiI GAAGAC 1 cut(s) 26
Bpu10I CCTNAGC 1 cut(s) 649
BsaAI YACGTR 1 cut(s) 341
BsaHI GRCGYC 1 cut(s) 447
BsaJI CCNNGG 2 cut(s) 241, 385
Bsc4I CCNNNNNNNGG 2 cut(s) 738, 739
Bse118I RCCGGY 1 cut(s) 743
Bse1I ACTGG 1 cut(s) 629
BseDI CCNNGG 2 cut(s) 241, 385
BseGI GGATG 1 cut(s) 226
BseLI CCNNNNNNNGG 2 cut(s) 738, 739
BseMII CTCAG 3 cut(s) 57, 663, 678
BseNI ACTGG 1 cut(s) 629
BseRI GAGGAG 1 cut(s) 610
BseSI GKGCMC 1 cut(s) 495
BseXI GCAGC 3 cut(s) 286, 424, 427
Bsh1236I CGCG 1 cut(s) 80
BshFI GGCC 2 cut(s) 308, 743
BshNI GGYRCC 2 cut(s) 492, 704
BsiHKAI GWGCWC 1 cut(s) 609
BsiSI CCGG 1 cut(s) 744
BslI CCNNNNNNNGG 2 cut(s) 738, 739
BsmAI GTCTC 2 cut(s) 239, 683
BsnI GGCC 2 cut(s) 308, 743
Bsp1286I GDGCHC 2 cut(s) 495, 609
Bsp143I GATC 4 cut(s) 92, 149, 187, 343
Bsp19I CCATGG 1 cut(s) 385
BspANI GGCC 2 cut(s) 308, 743
BspCNI CTCAG 3 cut(s) 58, 662, 679
BspFNI CGCG 1 cut(s) 80
BspLI GGNNCC 3 cut(s) 478, 494, 706
BspPI GGATC 3 cut(s) 100, 157, 182
BspT107I GGYRCC 2 cut(s) 492, 704
BsrFI RCCGGY 1 cut(s) 743
BsrI ACTGG 1 cut(s) 629
BssAI RCCGGY 1 cut(s) 743
BssECI CCNNGG 2 cut(s) 241, 385
BssMI GATC 4 cut(s) 92, 149, 187, 343
BssNI GRCGYC 1 cut(s) 447
BssSI CACGAG 1 cut(s) 192
BssT1I CCWWGG 2 cut(s) 241, 385
Bst2BI CACGAG 1 cut(s) 192
Bst4CI ACNGT 3 cut(s) 25, 264, 430
Bst6I CTCTTC 2 cut(s) 242, 413
BstACI GRCGYC 1 cut(s) 447
BstBAI YACGTR 1 cut(s) 341
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 4 cut(s) 66, 649, 687, 693
BstDSI CCRYGG 1 cut(s) 385
BstF5I GGATG 1 cut(s) 226
BstFNI CGCG 1 cut(s) 80
BstHHI GCGC 1 cut(s) 539
BstKTI GATC 4 cut(s) 95, 152, 190, 346
BstMAI GTCTC 2 cut(s) 239, 683
BstMBI GATC 4 cut(s) 92, 149, 187, 343
BstMWI GCNNNNNNNGC 1 cut(s) 446
BstSLI GKGCMC 1 cut(s) 495
BstUI CGCG 1 cut(s) 80
BstV1I GCAGC 3 cut(s) 286, 424, 427
BstV2I GAAGAC 1 cut(s) 26
BstX2I RGATCY 2 cut(s) 92, 149
BstYI RGATCY 2 cut(s) 92, 149
BsuRI GGCC 2 cut(s) 308, 743
BtgI CCRYGG 1 cut(s) 385
BtrI CACGTC 1 cut(s) 658
BtsCI GGATG 1 cut(s) 226
BtsIMutI CAGTG 1 cut(s) 636
Cac8I GCNNGC 1 cut(s) 6
CfoI GCGC 1 cut(s) 539
Cfr10I RCCGGY 1 cut(s) 743
Cfr13I GGNCC 3 cut(s) 350, 551, 741
CseI GACGC 3 cut(s) 406, 455, 692
Csp6I GTAC 1 cut(s) 705
CviAII CATG 1 cut(s) 386
CviJI RGCY 9 cut(s) 36, 44, 308, 326, 600, 628, 648, 729, 743
CviKI_1 RGCY 9 cut(s) 36, 44, 308, 326, 600, 628, 648, 729, 743
CviQI GTAC 1 cut(s) 705
DdeI CTNAG 4 cut(s) 66, 649, 687, 693
DpnI GATC 4 cut(s) 94, 151, 189, 345
DpnII GATC 4 cut(s) 92, 149, 187, 343
DraIII CACNNNGTG 2 cut(s) 341, 499
Eam1104I CTCTTC 2 cut(s) 242, 413
EarI CTCTTC 2 cut(s) 242, 413
Eco130I CCWWGG 2 cut(s) 241, 385
Eco47I GGWCC 2 cut(s) 350, 551
Eco57I CTGAAG 3 cut(s) 60, 290, 507
EcoO109I RGGNCCY 1 cut(s) 350
EcoT14I CCWWGG 2 cut(s) 241, 385
ErhI CCWWGG 2 cut(s) 241, 385
FaeI CATG 1 cut(s) 389
FaiI YATR 5 cut(s) 282, 387, 404, 549, 750
FalI AAGNNNNNCTT 2 cut(s) 480, 512
FatI CATG 1 cut(s) 385
Fnu4HI GCNGC 3 cut(s) 275, 438, 441
FokI GGATG 1 cut(s) 233
Fsp4HI GCNGC 3 cut(s) 275, 438, 441
FspBI CTAG 2 cut(s) 201, 717
GlaI GCGC 1 cut(s) 538
GluI GCNGC 3 cut(s) 275, 438, 441
HaeIII GGCC 2 cut(s) 308, 743
HapII CCGG 1 cut(s) 744
HgaI GACGC 3 cut(s) 406, 455, 692
HhaI GCGC 1 cut(s) 539
Hin1I GRCGYC 1 cut(s) 447
Hin1II CATG 1 cut(s) 389
Hin6I GCGC 1 cut(s) 537
HinP1I GCGC 1 cut(s) 537
HincII GTYRAC 1 cut(s) 682
HindII GTYRAC 1 cut(s) 682
HindIII AAGCTT 1 cut(s) 42
HinfI GANTC 4 cut(s) 52, 68, 121, 720
HpaII CCGG 1 cut(s) 744
HphI GGTGA 2 cut(s) 535, 665
Hpy166II GTNNAC 4 cut(s) 56, 364, 643, 682
Hpy188I TCNGA 4 cut(s) 67, 149, 270, 508
Hpy188III TCNNGA 4 cut(s) 156, 176, 185, 421
Hpy8I GTNNAC 4 cut(s) 56, 364, 643, 682
Hpy99I CGWCG 2 cut(s) 583, 586
HpyAV CCTTC 2 cut(s) 482, 682
HpyCH4III ACNGT 3 cut(s) 25, 264, 430
HpyCH4IV ACGT 3 cut(s) 340, 578, 657
HpyCH4V TGCA 1 cut(s) 668
HpyF10VI GCNNNNNNNGC 1 cut(s) 446
HpyF3I CTNAG 4 cut(s) 66, 649, 687, 693
HpySE526I ACGT 3 cut(s) 340, 578, 657
Hsp92I GRCGYC 1 cut(s) 447
Hsp92II CATG 1 cut(s) 389
HspAI GCGC 1 cut(s) 537
KpnI GGTACC 1 cut(s) 708
Kzo9I GATC 4 cut(s) 92, 149, 187, 343
LmnI GCTCC 2 cut(s) 597, 734
LpnPI CCDG 8 cut(s) 51, 141, 198, 316, 372, 457, 636, 642
Lsp1109I GCAGC 3 cut(s) 286, 424, 427
LweI GCATC 1 cut(s) 472
MaeI CTAG 2 cut(s) 201, 717
MaeII ACGT 3 cut(s) 340, 578, 657
MaeIII GTNAC 2 cut(s) 133, 653
MalI GATC 4 cut(s) 94, 151, 189, 345
MboI GATC 4 cut(s) 92, 149, 187, 343
MboII GAAGA 6 cut(s) 31, 144, 229, 400, 460, 538
MflI RGATCY 2 cut(s) 92, 149
MhlI GDGCHC 2 cut(s) 495, 609
MluCI AATT 1 cut(s) 736
MlyI GAGTC 3 cut(s) 61, 77, 729
MnlI CCTC 6 cut(s) 201, 298, 316, 341, 588, 694
MseI TTAA 1 cut(s) 141
MslI CAYNNNNRTG 2 cut(s) 314, 518
MspI CCGG 1 cut(s) 744
MvnI CGCG 1 cut(s) 80
MwoI GCNNNNNNNGC 1 cut(s) 446
NcoI CCATGG 1 cut(s) 385
NdeII GATC 4 cut(s) 92, 149, 187, 343
NlaIII CATG 1 cut(s) 389
NlaIV GGNNCC 3 cut(s) 478, 494, 706
NmeAIII GCCGAG 1 cut(s) 660
NmuCI GTSAC 2 cut(s) 133, 653
PfeI GAWTC 1 cut(s) 121
PkrI GCNGC 3 cut(s) 276, 439, 442
PleI GAGTC 3 cut(s) 60, 76, 728
PpsI GAGTC 3 cut(s) 60, 76, 728
Ppu21I YACGTR 1 cut(s) 341
PpuMI RGGWCCY 1 cut(s) 350
Psp5II RGGWCCY 1 cut(s) 350
PspN4I GGNNCC 3 cut(s) 478, 494, 706
PspPI GGNCC 3 cut(s) 350, 551, 741
PspPPI RGGWCCY 1 cut(s) 350
PsuI RGATCY 2 cut(s) 92, 149
RsaI GTAC 1 cut(s) 706
RsaNI GTAC 1 cut(s) 705
RseI CAYNNNNRTG 2 cut(s) 314, 518
SaqAI TTAA 1 cut(s) 141
SatI GCNGC 3 cut(s) 275, 438, 441
Sau3AI GATC 4 cut(s) 92, 149, 187, 343
Sau96I GGNCC 3 cut(s) 350, 551, 741
SchI GAGTC 3 cut(s) 61, 77, 729
SduI GDGCHC 2 cut(s) 495, 609
SfaNI GCATC 1 cut(s) 472
SinI GGWCC 2 cut(s) 350, 551
SmiMI CAYNNNNRTG 2 cut(s) 314, 518
Sse9I AATT 1 cut(s) 736
SspMI CTAG 2 cut(s) 201, 717
StyI CCWWGG 2 cut(s) 241, 385
TaaI ACNGT 3 cut(s) 25, 264, 430
TaiI ACGT 3 cut(s) 343, 581, 660
TaqI TCGA 3 cut(s) 346, 411, 723
TasI AATT 1 cut(s) 736
TfiI GAWTC 1 cut(s) 121
Tru1I TTAA 1 cut(s) 141
Tru9I TTAA 1 cut(s) 141
TscAI CASTG 1 cut(s) 636
TseFI GTSAC 2 cut(s) 133, 653
TseI GCWGC 3 cut(s) 274, 437, 440
Tsp45I GTSAC 2 cut(s) 133, 653
TspGWI ACGGA 2 cut(s) 106, 121
TspRI CASTG 1 cut(s) 636
VpaK11BI GGWCC 2 cut(s) 350, 551
XspI CTAG 2 cut(s) 201, 717
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.