Rmu_sc0002509.1_g000004

Stem-specific protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002509.1
OG0012461
Physical Location & Seq
Reverse (-)
15778 .. 18634
2857 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002509.1_g000004.1.cds

Sequence Viewer

Length: 969 bp
atgctggccgtgttcgacaaatcggtggcgaagagcccggaggctctgcaaagccctgaatcgggatcagtctctgctctcaaagatgggttcttggcccaacacttcggctccgtccacccttcttccgtcaccgtcaatcttggctcttccggcctctttgcctattccaacgacaagcaaaaccctctgcttcccaggctgtttgcggttgtggatgacattttctgcctgttccaaggccatattgagaatgtcgctcttctcaagcaacaatatggattgaacaagacagccaatgaggtgatcattgttattgaagcgtaccgaactttgagagatcgtggtccttatcctgctgatcaggttgtgagagatatccaagggaagtttgcttttattctctatgacactacttcaaaggtctcgtttgtagctgctgatgttgatggcaatgttccttttttctggggaactgattctgtaggcaatcttgttattgctgatgatgcagaagttgtgaagaagggctgtgagaagtcatttgcaccatttcctaaaggatgtttcttcacatcctctggaggcctgaggagttttgagcacccccataatgagttgaaggcagtgccaagggtggatagttccggtcaggtgtgcggtgcaactttcaaggttgatgctgaggctaggaaggagtctagtggaatgcccagagttgggagtgctgctaattgcaactttagccagatggaggtgattaatgcgactctagtagtttgcggttgcttagtgtttggtgctgtggagatcaaaagactactccgcagtaaacccggggagaaactacctgatgatatcatggacattgtgccctggaagaaactatctgacgatgtcatagagatgattgtgccacacctgagtgtacgtgatcgtatacgattaagcagtgtttgcaagccttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3700

Protein Analysis

322

Amino Acids

35.02

Weight (kDa)

6.32

Isoelectric Point (pI)

34.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012461)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22850 AT5G43830
fragaria_vesca FvH4_4g01560
malus_domestica MD13G1201000.v1.1 MD16G1200200.v1.1
prunus_persica Prupe.1G022400_v2.0.a1 Prupe.1G022400_v2.0.a1
pyrus_communis pycom13g17440 pycom16g16940
rosa_chinensis RchiOBHm_Chr4g0388131
rosa_laevigata RLG00000010078
rosa_multiflora Rmu_sc0002509.1_g000004
rosa_roxburghii Rroxscaffold_5G00334680
rosa_rugosa Rorug03G0315000
rosa_samantha Rh4AG020800 Rh4BG015200 Rh4CG021400 Rh4DG016000
rosa_wichuraiana Rw4G001390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 940
AciI CCGC 4 cut(s) 209, 660, 783, 826
AclWI GGATC 1 cut(s) 73
AcoI YGGCCR 1 cut(s) 6
AfaI GTAC 2 cut(s) 326, 930
AfiI CCNNNNNNNGG 5 cut(s) 61, 62, 719, 720, 754
AgsI TTSAA 5 cut(s) 286, 320, 420, 622, 673
AjnI CCWGG 2 cut(s) 197, 875
AleI CACNNNNGTG 1 cut(s) 924
AluBI AGCT 1 cut(s) 437
AluI AGCT 1 cut(s) 437
Alw21I GWGCWC 1 cut(s) 606
Alw26I GTCTC 2 cut(s) 76, 430
AlwI GGATC 1 cut(s) 73
AlwNI CAGNNNCTG 1 cut(s) 74
Ama87I CYCGRG 1 cut(s) 836
AoxI GGCC 5 cut(s) 6, 96, 154, 241, 586
ApeKI GCWGC 2 cut(s) 437, 728
AseI ATTAAT 1 cut(s) 762
Asp700I GAANNNNTTC 1 cut(s) 478
AspS9I GGNCC 2 cut(s) 97, 347
AsuC2I CCSGG 3 cut(s) 38, 837, 838
AsuHPI GGTGA 3 cut(s) 124, 316, 769
AvaI CYCGRG 1 cut(s) 836
AvaII GGWCC 1 cut(s) 347
AxyI CCTNAGG 1 cut(s) 590
BaeGI GKGCMC 1 cut(s) 876
BanII GRGCYC 1 cut(s) 38
Bbv12I GWGCWC 1 cut(s) 606
BbvCI CCTCAGC 1 cut(s) 684
BbvI GCAGC 2 cut(s) 424, 715
BccI CCATC 3 cut(s) 80, 443, 745
BciT130I CCWGG 2 cut(s) 199, 877
BclI TGATCA 2 cut(s) 306, 361
BcnI CCSGG 3 cut(s) 38, 837, 838
BcoDI GTCTC 2 cut(s) 76, 430
BfaI CTAG 3 cut(s) 690, 702, 773
BfmI CTRYAG 1 cut(s) 483
BisI GCNGC 2 cut(s) 438, 729
BlsI GCNGC 2 cut(s) 439, 730
Bme1390I CCNGG 5 cut(s) 38, 199, 837, 838, 877
Bme18I GGWCC 1 cut(s) 347
BmeT110I CYCGRG 1 cut(s) 836
BmgT120I GGNCC 2 cut(s) 97, 347
BmiI GGNNCC 1 cut(s) 112
BmrFI CCNGG 5 cut(s) 38, 199, 837, 838, 877
BmsI GCATC 2 cut(s) 499, 670
BpmI CTGGAG 1 cut(s) 603
Bpu10I CCTNAGC 1 cut(s) 684
BpuEI CTTGAG 1 cut(s) 251
BpuMI CCSGG 3 cut(s) 38, 837, 838
BsaAI YACGTR 1 cut(s) 932
BsaI GGTCTC 1 cut(s) 430
BsaJI CCNNGG 7 cut(s) 197, 238, 382, 632, 836, 837, 875
BsaWI WCCGGW 1 cut(s) 647
BsaXI ACNNNNNCTCC 2 cut(s) 95, 125
Bsc4I CCNNNNNNNGG 5 cut(s) 61, 62, 719, 720, 754
Bse21I CCTNAGG 1 cut(s) 590
Bse3DI GCAATG 1 cut(s) 460
BseBI CCWGG 2 cut(s) 199, 877
BseDI CCNNGG 7 cut(s) 197, 238, 382, 632, 836, 837, 875
BseGI GGATG 3 cut(s) 223, 569, 575
BseLI CCNNNNNNNGG 5 cut(s) 61, 62, 719, 720, 754
BseMI GCAATG 1 cut(s) 460
BseMII CTCAG 3 cut(s) 581, 675, 914
BseRI GAGGAG 1 cut(s) 607
BseSI GKGCMC 1 cut(s) 876
BseXI GCAGC 2 cut(s) 424, 715
BshFI GGCC 5 cut(s) 8, 98, 156, 243, 588
BsiHKAI GWGCWC 1 cut(s) 606
BsiHKCI CYCGRG 1 cut(s) 836
BsiSI CCGG 4 cut(s) 38, 153, 648, 837
BslI CCNNNNNNNGG 5 cut(s) 61, 62, 719, 720, 754
BsmAI GTCTC 2 cut(s) 76, 430
BsmI GAATGC 1 cut(s) 714
BsnI GGCC 5 cut(s) 8, 98, 156, 243, 588
Bso31I GGTCTC 1 cut(s) 430
BsoBI CYCGRG 1 cut(s) 836
Bsp1286I GDGCHC 3 cut(s) 38, 606, 876
Bsp143I GATC 6 cut(s) 65, 306, 340, 361, 810, 934
BspACI CCGC 4 cut(s) 209, 660, 783, 826
BspANI GGCC 5 cut(s) 8, 98, 156, 243, 588
BspCNI CTCAG 3 cut(s) 582, 676, 915
BspLI GGNNCC 1 cut(s) 112
BspPI GGATC 1 cut(s) 73
BspQI GCTCTTC 3 cut(s) 26, 154, 267
BspTNI GGTCTC 1 cut(s) 430
BsrDI GCAATG 1 cut(s) 460
BssECI CCNNGG 7 cut(s) 197, 238, 382, 632, 836, 837, 875
BssMI GATC 6 cut(s) 65, 306, 340, 361, 810, 934
BssNAI GTATAC 1 cut(s) 941
BssT1I CCWWGG 3 cut(s) 238, 382, 632
Bst1107I GTATAC 1 cut(s) 941
Bst2UI CCWGG 2 cut(s) 199, 877
Bst4CI ACNGT 1 cut(s) 136
Bst6I CTCTTC 3 cut(s) 26, 154, 267
BstAPI GCANNNNNTGC 1 cut(s) 957
BstBAI YACGTR 1 cut(s) 932
BstC8I GCNNGC 2 cut(s) 6, 962
BstDEI CTNAG 4 cut(s) 590, 684, 790, 923
BstF5I GGATG 3 cut(s) 223, 569, 575
BstKTI GATC 6 cut(s) 68, 309, 343, 364, 813, 937
BstMAI GTCTC 2 cut(s) 76, 430
BstMBI GATC 6 cut(s) 65, 306, 340, 361, 810, 934
BstMWI GCNNNNNNNGC 5 cut(s) 153, 199, 509, 744, 957
BstNI CCWGG 2 cut(s) 199, 877
BstSCI CCNGG 5 cut(s) 36, 197, 835, 836, 875
BstSFI CTRYAG 1 cut(s) 483
BstSLI GKGCMC 1 cut(s) 876
BstV1I GCAGC 2 cut(s) 424, 715
BstZ17I GTATAC 1 cut(s) 941
Bsu36I CCTNAGG 1 cut(s) 590
BsuRI GGCC 5 cut(s) 8, 98, 156, 243, 588
BtsCI GGATG 3 cut(s) 223, 569, 575
BtsI GCAGTG 2 cut(s) 633, 958
BtsIMutI CAGTG 2 cut(s) 633, 958
Cac8I GCNNGC 2 cut(s) 6, 962
CaiI CAGNNNCTG 1 cut(s) 74
Cfr13I GGNCC 2 cut(s) 97, 347
Cfr9I CCCGGG 1 cut(s) 836
Csp6I GTAC 2 cut(s) 325, 929
CviAII CATG 1 cut(s) 862
CviQI GTAC 2 cut(s) 325, 929
DdeI CTNAG 4 cut(s) 590, 684, 790, 923
DpnI GATC 6 cut(s) 67, 308, 342, 363, 812, 936
DpnII GATC 6 cut(s) 65, 306, 340, 361, 810, 934
EaeI YGGCCR 1 cut(s) 6
Eam1104I CTCTTC 3 cut(s) 26, 154, 267
EarI CTCTTC 3 cut(s) 26, 154, 267
Eco130I CCWWGG 3 cut(s) 238, 382, 632
Eco147I AGGCCT 1 cut(s) 588
Eco24I GRGCYC 1 cut(s) 38
Eco31I GGTCTC 1 cut(s) 430
Eco32I GATATC 2 cut(s) 379, 859
Eco47I GGWCC 1 cut(s) 347
Eco81I CCTNAGG 1 cut(s) 590
Eco88I CYCGRG 1 cut(s) 836
EcoRII CCWGG 2 cut(s) 197, 875
EcoRV GATATC 2 cut(s) 379, 859
EcoT14I CCWWGG 3 cut(s) 238, 382, 632
EcoT38I GRGCYC 1 cut(s) 38
ErhI CCWWGG 3 cut(s) 238, 382, 632
FaeI CATG 1 cut(s) 865
FaiI YATR 7 cut(s) 246, 279, 408, 612, 863, 902, 941
FatI CATG 1 cut(s) 861
FbaI TGATCA 2 cut(s) 306, 361
FblI GTMKAC 1 cut(s) 940
Fnu4HI GCNGC 2 cut(s) 438, 729
FokI GGATG 3 cut(s) 230, 562, 576
FriOI GRGCYC 1 cut(s) 38
Fsp4HI GCNGC 2 cut(s) 438, 729
FspBI CTAG 3 cut(s) 690, 702, 773
GluI GCNGC 2 cut(s) 438, 729
GsuI CTGGAG 1 cut(s) 603
HaeIII GGCC 5 cut(s) 8, 98, 156, 243, 588
HapII CCGG 4 cut(s) 38, 153, 648, 837
Hin1II CATG 1 cut(s) 865
HinfI GANTC 4 cut(s) 59, 479, 698, 769
HpaII CCGG 4 cut(s) 38, 153, 648, 837
HphI GGTGA 3 cut(s) 124, 316, 769
Hpy166II GTNNAC 4 cut(s) 118, 833, 929, 941
Hpy188I TCNGA 1 cut(s) 892
Hpy188III TCNNGA 2 cut(s) 63, 582
Hpy8I GTNNAC 4 cut(s) 118, 833, 929, 941
HpyAV CCTTC 4 cut(s) 132, 520, 616, 688
HpyCH4III ACNGT 1 cut(s) 136
HpyCH4IV ACGT 1 cut(s) 931
HpyCH4V TGCA 6 cut(s) 49, 512, 548, 665, 738, 960
HpyF10VI GCNNNNNNNGC 5 cut(s) 153, 199, 509, 744, 957
HpyF3I CTNAG 4 cut(s) 590, 684, 790, 923
HpySE526I ACGT 1 cut(s) 931
Hsp92II CATG 1 cut(s) 865
Ksp22I TGATCA 2 cut(s) 306, 361
Kzo9I GATC 6 cut(s) 65, 306, 340, 361, 810, 934
LguI GCTCTTC 3 cut(s) 26, 154, 267
LmnI GCTCC 1 cut(s) 116
Lsp1109I GCAGC 2 cut(s) 424, 715
LweI GCATC 2 cut(s) 499, 670
MaeI CTAG 3 cut(s) 690, 702, 773
MaeII ACGT 1 cut(s) 931
MaeIII GTNAC 1 cut(s) 130
MalI GATC 6 cut(s) 67, 308, 342, 363, 812, 936
MboI GATC 6 cut(s) 65, 306, 340, 361, 810, 934
MboII GAAGA 7 cut(s) 43, 117, 141, 254, 535, 562, 892
MhlI GDGCHC 3 cut(s) 38, 606, 876
MluCI AATT 1 cut(s) 733
MlyI GAGTC 2 cut(s) 707, 763
MmeI TCCRAC 1 cut(s) 195
MnlI CCTC 9 cut(s) 34, 167, 198, 295, 578, 585, 589, 679, 748
MroXI GAANNNNTTC 1 cut(s) 478
MseI TTAA 2 cut(s) 762, 947
MslI CAYNNNNRTG 2 cut(s) 905, 924
MspI CCGG 4 cut(s) 38, 153, 648, 837
MspR9I CCNGG 5 cut(s) 38, 199, 837, 838, 877
Mva1269I GAATGC 1 cut(s) 714
MvaI CCWGG 2 cut(s) 199, 877
MwoI GCNNNNNNNGC 5 cut(s) 153, 199, 509, 744, 957
NciI CCSGG 3 cut(s) 38, 837, 838
NdeII GATC 6 cut(s) 65, 306, 340, 361, 810, 934
NlaIII CATG 1 cut(s) 865
NlaIV GGNNCC 1 cut(s) 112
NmuCI GTSAC 1 cut(s) 130
OliI CACNNNNGTG 1 cut(s) 924
PceI AGGCCT 1 cut(s) 588
PciSI GCTCTTC 3 cut(s) 26, 154, 267
PctI GAATGC 1 cut(s) 714
PdmI GAANNNNTTC 1 cut(s) 478
PfeI GAWTC 2 cut(s) 59, 479
PflFI GACNNNGTC 1 cut(s) 896
PkrI GCNGC 2 cut(s) 439, 730
PleI GAGTC 2 cut(s) 706, 763
PpsI GAGTC 2 cut(s) 706, 763
Ppu21I YACGTR 1 cut(s) 932
PshBI ATTAAT 1 cut(s) 762
Psp6I CCWGG 2 cut(s) 197, 875
PspGI CCWGG 2 cut(s) 197, 875
PspN4I GGNNCC 1 cut(s) 112
PspPI GGNCC 2 cut(s) 97, 347
PstNI CAGNNNCTG 1 cut(s) 74
PsyI GACNNNGTC 1 cut(s) 896
RsaI GTAC 2 cut(s) 326, 930
RsaNI GTAC 2 cut(s) 325, 929
RseI CAYNNNNRTG 2 cut(s) 905, 924
SapI GCTCTTC 3 cut(s) 26, 154, 267
SaqAI TTAA 2 cut(s) 762, 947
SatI GCNGC 2 cut(s) 438, 729
Sau3AI GATC 6 cut(s) 65, 306, 340, 361, 810, 934
Sau96I GGNCC 2 cut(s) 97, 347
SchI GAGTC 2 cut(s) 707, 763
ScrFI CCNGG 5 cut(s) 38, 199, 837, 838, 877
SduI GDGCHC 3 cut(s) 38, 606, 876
SfaNI GCATC 2 cut(s) 499, 670
SfcI CTRYAG 1 cut(s) 483
SinI GGWCC 1 cut(s) 347
SmaI CCCGGG 1 cut(s) 838
SmiMI CAYNNNNRTG 2 cut(s) 905, 924
SmlI CTYRAG 1 cut(s) 266
SmoI CTYRAG 1 cut(s) 266
Sse9I AATT 1 cut(s) 733
SseBI AGGCCT 1 cut(s) 588
SsiI CCGC 4 cut(s) 209, 660, 783, 826
SspMI CTAG 3 cut(s) 690, 702, 773
StuI AGGCCT 1 cut(s) 588
StyD4I CCNGG 5 cut(s) 36, 197, 835, 836, 875
StyI CCWWGG 3 cut(s) 238, 382, 632
TaaI ACNGT 1 cut(s) 136
TaiI ACGT 1 cut(s) 934
TaqI TCGA 1 cut(s) 15
TasI AATT 1 cut(s) 733
TfiI GAWTC 2 cut(s) 59, 479
Tru1I TTAA 2 cut(s) 762, 947
Tru9I TTAA 2 cut(s) 762, 947
TscAI CASTG 2 cut(s) 633, 958
TseFI GTSAC 1 cut(s) 130
TseI GCWGC 2 cut(s) 437, 728
Tsp45I GTSAC 1 cut(s) 130
TspGWI ACGGA 2 cut(s) 103, 118
TspMI CCCGGG 1 cut(s) 836
TspRI CASTG 2 cut(s) 633, 958
Tth111I GACNNNGTC 1 cut(s) 896
VpaK11BI GGWCC 1 cut(s) 347
VspI ATTAAT 1 cut(s) 762
XmaI CCCGGG 1 cut(s) 836
XmiI GTMKAC 1 cut(s) 940
XmnI GAANNNNTTC 1 cut(s) 478
XspI CTAG 3 cut(s) 690, 702, 773
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.