Rorug03G0315000

Stem-specific protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0012461
Physical Location & Seq
Reverse (-)
33902502 .. 33906417
3916 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0315000.1

Sequence Viewer

Length: 720 bp
ATGGCTCAGTATACCCAAACCTTAAACCCTCCCAAAACCCTCATCCCCAAGCTCCCAAATCCCAACCCCTCTTTCTCCTCCTTCAAAACCACAAAACCCAAATCCAAAAGCTTCCCAACACTCTCTGTCTCGGCCCAAAATCAACGGCCCCTGGATGCCCTGCTCAACGGTTCTCGCAAACAAGAGGTGCTTGGCGCCATTGGGAGTTCCTTGTCAAACTGTCTTTCTGAAATCAATCTCCACCTCACAGTTGGTGGCCTCAAATCCAAAAGCAGAGGCAAGGTTAGGGATGTTTATGACAGTGGCTTGGTAAAGAGCCAAAAGCTTCCTGCTAACATACTCACACCAACAACTAAGGCTGCAGATCATGACATTCCTGTTACTCCAGATGAGATAATTGAACGTGGACTGATGAGTCAAGCGGATTATGATGAACGTGTGGCTTTGGAGCATGGGTTGATATTGGTAGACACAAAGTACGAATTTGGAAAGGGACACGATGGTTCCATACATTTGATTGATGAGGAAGTCCATTTAAACTTGATAAAATGCTCATTAAGCCTCATTTTTGGTTATCCCCTCTCCCTCTTCCCTTCTGATGTATATATTTTCTTGTACGAGACGATCACAAAATCAAAATTCAAGATGCCTTCGACAGAGGAGCCAATACATGATCGAATATCTCGCAATGTGGCACAAGCACTGTCATCTCTGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3700

Protein Analysis

239

Amino Acids

26.36

Weight (kDa)

8.72

Isoelectric Point (pI)

36.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAICAR_synt PF01259 93 - 175 1.7e-11 SAICAR synthetase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012461)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22850 AT5G43830
fragaria_vesca FvH4_4g01560
malus_domestica MD13G1201000.v1.1 MD16G1200200.v1.1
prunus_persica Prupe.1G022400_v2.0.a1 Prupe.1G022400_v2.0.a1
pyrus_communis pycom13g17440 pycom16g16940
rosa_chinensis RchiOBHm_Chr4g0388131
rosa_laevigata RLG00000010078
rosa_multiflora Rmu_sc0002509.1_g000004
rosa_roxburghii Rroxscaffold_5G00334680
rosa_rugosa Rorug03G0315000
rosa_samantha Rh4AG020800 Rh4BG015200 Rh4CG021400 Rh4DG016000
rosa_wichuraiana Rw4G001390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 414
AccB1I GGYRCC 1 cut(s) 194
AccI GTMKAC 2 cut(s) 11, 468
AciI CCGC 1 cut(s) 422
AcsI RAATTY 2 cut(s) 482, 638
AcyI GRCGYC 1 cut(s) 195
AfaI GTAC 2 cut(s) 479, 617
AflIII ACRYGT 1 cut(s) 436
AgsI TTSAA 3 cut(s) 85, 401, 643
AjnI CCWGG 1 cut(s) 150
AjuI GAANNNNNNNTTGG 2 cut(s) 56, 88
AluBI AGCT 3 cut(s) 52, 111, 325
AluI AGCT 3 cut(s) 52, 111, 325
Alw26I GTCTC 2 cut(s) 133, 614
AoxI GGCC 3 cut(s) 132, 146, 256
ApeKI GCWGC 1 cut(s) 359
ApoI RAATTY 2 cut(s) 482, 638
AspLEI GCGC 1 cut(s) 197
AspS9I GGNCC 2 cut(s) 133, 147
BanI GGYRCC 1 cut(s) 194
BbvI GCAGC 1 cut(s) 346
BccI CCATC 1 cut(s) 494
BceAI ACGGC 1 cut(s) 161
BciT130I CCWGG 1 cut(s) 152
BcoDI GTCTC 2 cut(s) 133, 614
BfmI CTRYAG 1 cut(s) 360
BfoI RGCGCY 1 cut(s) 198
BisI GCNGC 1 cut(s) 360
BlsI GCNGC 1 cut(s) 361
Bme1390I CCNGG 1 cut(s) 152
BmgT120I GGNCC 2 cut(s) 133, 147
BmiI GGNNCC 4 cut(s) 149, 196, 505, 663
BmrFI CCNGG 1 cut(s) 152
BmsI GCATC 2 cut(s) 145, 636
BpmI CTGGAG 1 cut(s) 369
BsaHI GRCGYC 1 cut(s) 195
BsaJI CCNNGG 1 cut(s) 150
BsaXI ACNNNNNCTCC 2 cut(s) 440, 470
Bse3DI GCAATG 1 cut(s) 694
BseBI CCWGG 1 cut(s) 152
BseDI CCNNGG 1 cut(s) 150
BseGI GGATG 3 cut(s) 42, 160, 295
BseMI GCAATG 1 cut(s) 694
BseMII CTCAG 1 cut(s) 20
BseRI GAGGAG 2 cut(s) 67, 674
BseXI GCAGC 1 cut(s) 346
BshFI GGCC 3 cut(s) 134, 148, 258
BshNI GGYRCC 1 cut(s) 194
BslFI GGGAC 1 cut(s) 507
BsmAI GTCTC 2 cut(s) 133, 614
BsmBI CGTCTC 1 cut(s) 614
BsmFI GGGAC 1 cut(s) 507
BsnI GGCC 3 cut(s) 134, 148, 258
Bsp143I GATC 3 cut(s) 364, 624, 673
BspACI CCGC 1 cut(s) 422
BspANI GGCC 3 cut(s) 134, 148, 258
BspCNI CTCAG 1 cut(s) 19
BspHI TCATGA 1 cut(s) 367
BspLI GGNNCC 4 cut(s) 149, 196, 505, 663
BspMAI CTGCAG 1 cut(s) 364
BspT107I GGYRCC 1 cut(s) 194
BsrDI GCAATG 1 cut(s) 694
BssECI CCNNGG 1 cut(s) 150
BssMI GATC 3 cut(s) 364, 624, 673
BssNAI GTATAC 1 cut(s) 12
BssNI GRCGYC 1 cut(s) 195
Bst1107I GTATAC 1 cut(s) 12
Bst2UI CCWGG 1 cut(s) 152
Bst4CI ACNGT 5 cut(s) 170, 221, 250, 302, 705
Bst6I CTCTTC 1 cut(s) 593
BstACI GRCGYC 1 cut(s) 195
BstDEI CTNAG 2 cut(s) 6, 354
BstF5I GGATG 3 cut(s) 42, 160, 295
BstH2I RGCGCY 1 cut(s) 198
BstHHI GCGC 1 cut(s) 197
BstKTI GATC 3 cut(s) 367, 627, 676
BstMAI GTCTC 2 cut(s) 133, 614
BstMBI GATC 3 cut(s) 364, 624, 673
BstMWI GCNNNNNNNGC 1 cut(s) 558
BstNI CCWGG 1 cut(s) 152
BstSCI CCNGG 1 cut(s) 150
BstSFI CTRYAG 1 cut(s) 360
BstV1I GCAGC 1 cut(s) 346
BstZ17I GTATAC 1 cut(s) 12
BsuRI GGCC 3 cut(s) 134, 148, 258
BtsCI GGATG 3 cut(s) 42, 160, 295
BtsIMutI CAGTG 2 cut(s) 307, 701
CciI TCATGA 1 cut(s) 367
CfoI GCGC 1 cut(s) 197
Cfr13I GGNCC 2 cut(s) 133, 147
Csp6I GTAC 2 cut(s) 478, 616
CviAII CATG 3 cut(s) 368, 452, 671
CviQI GTAC 2 cut(s) 478, 616
DdeI CTNAG 2 cut(s) 6, 354
DinI GGCGCC 1 cut(s) 196
DpnI GATC 3 cut(s) 366, 626, 675
DpnII GATC 3 cut(s) 364, 624, 673
DraI TTTAAA 1 cut(s) 537
DrdI GACNNNNNNGTC 1 cut(s) 414
DseDI GACNNNNNNGTC 1 cut(s) 414
Eam1104I CTCTTC 1 cut(s) 593
EarI CTCTTC 1 cut(s) 593
EcoRII CCWGG 1 cut(s) 150
EgeI GGCGCC 1 cut(s) 196
EheI GGCGCC 1 cut(s) 196
Esp3I CGTCTC 1 cut(s) 614
FaeI CATG 3 cut(s) 371, 455, 674
FalI AAGNNNNNCTT 2 cut(s) 174, 206
FaqI GGGAC 1 cut(s) 507
FatI CATG 3 cut(s) 367, 451, 670
FblI GTMKAC 2 cut(s) 11, 468
Fnu4HI GCNGC 1 cut(s) 360
FokI GGATG 3 cut(s) 29, 167, 302
Fsp4HI GCNGC 1 cut(s) 360
GlaI GCGC 1 cut(s) 196
GluI GCNGC 1 cut(s) 360
GsuI CTGGAG 1 cut(s) 369
HaeII RGCGCY 1 cut(s) 198
HaeIII GGCC 3 cut(s) 134, 148, 258
HhaI GCGC 1 cut(s) 197
Hin1I GRCGYC 1 cut(s) 195
Hin1II CATG 3 cut(s) 371, 455, 674
Hin6I GCGC 1 cut(s) 195
HinP1I GCGC 1 cut(s) 195
HindIII AAGCTT 2 cut(s) 109, 323
HinfI GANTC 1 cut(s) 415
Hpy166II GTNNAC 3 cut(s) 12, 407, 469
Hpy188I TCNGA 3 cut(s) 229, 598, 714
Hpy188III TCNNGA 3 cut(s) 368, 386, 643
Hpy8I GTNNAC 3 cut(s) 12, 407, 469
HpyAV CCTTC 3 cut(s) 91, 603, 660
HpyCH4III ACNGT 5 cut(s) 170, 221, 250, 302, 705
HpyCH4IV ACGT 2 cut(s) 403, 436
HpyCH4V TGCA 1 cut(s) 362
HpyF10VI GCNNNNNNNGC 1 cut(s) 558
HpyF3I CTNAG 2 cut(s) 6, 354
HpySE526I ACGT 2 cut(s) 403, 436
Hsp92I GRCGYC 1 cut(s) 195
Hsp92II CATG 3 cut(s) 371, 455, 674
HspAI GCGC 1 cut(s) 195
KasI GGCGCC 1 cut(s) 194
Kzo9I GATC 3 cut(s) 364, 624, 673
LmnI GCTCC 3 cut(s) 57, 448, 661
LpnPI CCDG 6 cut(s) 137, 164, 173, 342, 390, 399
Lsp1109I GCAGC 1 cut(s) 346
LweI GCATC 2 cut(s) 145, 636
MaeII ACGT 2 cut(s) 403, 436
MaeIII GTNAC 1 cut(s) 379
MalI GATC 3 cut(s) 366, 626, 675
MboI GATC 3 cut(s) 364, 624, 673
MboII GAAGA 1 cut(s) 580
MluCI AATT 3 cut(s) 396, 482, 638
Mly113I GGCGCC 1 cut(s) 195
MlyI GAGTC 1 cut(s) 424
MseI TTAA 3 cut(s) 23, 536, 557
MspR9I CCNGG 1 cut(s) 152
MvaI CCWGG 1 cut(s) 152
MwoI GCNNNNNNNGC 1 cut(s) 558
NarI GGCGCC 1 cut(s) 195
NdeII GATC 3 cut(s) 364, 624, 673
NlaIII CATG 3 cut(s) 371, 455, 674
NlaIV GGNNCC 4 cut(s) 149, 196, 505, 663
NmeAIII GCCGAG 1 cut(s) 110
PagI TCATGA 1 cut(s) 367
PkrI GCNGC 1 cut(s) 361
PleI GAGTC 1 cut(s) 423
PluTI GGCGCC 1 cut(s) 198
PpsI GAGTC 1 cut(s) 423
Psp6I CCWGG 1 cut(s) 150
PspGI CCWGG 1 cut(s) 150
PspN4I GGNNCC 4 cut(s) 149, 196, 505, 663
PspPI GGNCC 2 cut(s) 133, 147
PstI CTGCAG 1 cut(s) 364
RsaI GTAC 2 cut(s) 479, 617
RsaNI GTAC 2 cut(s) 478, 616
SaqAI TTAA 3 cut(s) 23, 536, 557
SatI GCNGC 1 cut(s) 360
Sau3AI GATC 3 cut(s) 364, 624, 673
Sau96I GGNCC 2 cut(s) 133, 147
SchI GAGTC 1 cut(s) 424
ScrFI CCNGG 1 cut(s) 152
SetI ASST 9 cut(s) 23, 54, 113, 189, 246, 285, 327, 406, 439
SfaNI GCATC 2 cut(s) 145, 636
SfcI CTRYAG 1 cut(s) 360
SfoI GGCGCC 1 cut(s) 196
Sse9I AATT 3 cut(s) 396, 482, 638
SsiI CCGC 1 cut(s) 422
SspDI GGCGCC 1 cut(s) 194
StyD4I CCNGG 1 cut(s) 150
TaaI ACNGT 5 cut(s) 170, 221, 250, 302, 705
TaiI ACGT 2 cut(s) 406, 439
TaqI TCGA 2 cut(s) 653, 676
TasI AATT 3 cut(s) 396, 482, 638
Tru1I TTAA 3 cut(s) 23, 536, 557
Tru9I TTAA 3 cut(s) 23, 536, 557
TscAI CASTG 2 cut(s) 307, 708
TseI GCWGC 1 cut(s) 359
TspDTI ATGAA 1 cut(s) 447
TspRI CASTG 2 cut(s) 307, 708
XapI RAATTY 2 cut(s) 482, 638
XcmI CCANNNNNNNNNTGG 1 cut(s) 248
XmiI GTMKAC 2 cut(s) 11, 468
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.