Prupe.1G022400_v2.0.a1

Stem-specific protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0012461
Physical Location & Seq
Forward (+)
1533240 .. 1535942
2703 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G022400.1

Sequence Viewer

Length: 753 bp
ATGCTAGCAGTTTTCGACAAATCGGTGGCTAAGAGCCCCGAGGCTCTGCAGAGCCCTCAATCTGGATCAGTCTCGGCTCTGAAAGATGGCTTTCTCGCGCAGCACTTTGCCTCTGTGCACCCTTCTTCTGTCACTGTCAATTTTGGCTCTTCTGGTCTCATCGTCTATTCTCTTGACAAACAGAACCCTCTTCTTCCCAGGCTGTTTGCGGTTGTGGACGACATTTTTTGCCTGTTCCAAGGCCACATTGAGAATGTTGCTCTTCTCAAGCAACAATATGGATTGAACAAGACAGCCAATGAAGTGATCATCATTATTGAAGCATACAGAACTCTGAGAGATCGAGGTCCTTATCCTGCTGATCAGGTTGTGAGAGACATCCAAGGGAAGTTTGCATTTATTCTCTATGACAGTGCTTCCAAAGCCACTTTTGTAGCTGCTGATCCTGATGGGAATGTTCCGTTCTTCTGGGGAACTGATTCTGAAGGCCATCTTGTTCTTGCAGACGATGCAGAAGTTGTGAAGAAGGGCTGCGGGAATTCTTTTGCACCATTTCCCAAAGGATGTTTCTTCACTTCCTCTGGAGGCTTGAGGAGTTACGAGCATCCCCACAATGAGTTGAAGGCGGTGCCAAGGGTGGATAGTTCAGGCCAAGTGTGTGGTGCCAATTTCAAGGTTGATGCTGAGGCTAAGAAGGAATCGAGTGGCATCCCAAGAGTCGGTAGTGCTGCCAACTGGTCAACAACTTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3700

Protein Analysis

251

Amino Acids

26.95

Weight (kDa)

6.06

Isoelectric Point (pI)

35.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012461)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22850 AT5G43830
fragaria_vesca FvH4_4g01560
malus_domestica MD13G1201000.v1.1 MD16G1200200.v1.1
prunus_persica Prupe.1G022400_v2.0.a1 Prupe.1G022400_v2.0.a1
pyrus_communis pycom13g17440 pycom16g16940
rosa_chinensis RchiOBHm_Chr4g0388131
rosa_laevigata RLG00000010078
rosa_multiflora Rmu_sc0002509.1_g000004
rosa_roxburghii Rroxscaffold_5G00334680
rosa_rugosa Rorug03G0315000
rosa_samantha Rh4AG020800 Rh4BG015200 Rh4CG021400 Rh4DG016000
rosa_wichuraiana Rw4G001390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 628, 662
AccII CGCG 1 cut(s) 98
AciI CCGC 3 cut(s) 209, 534, 626
AclWI GGATC 2 cut(s) 73, 437
AcsI RAATTY 1 cut(s) 538
AcuI CTGAAG 1 cut(s) 504
AfiI CCNNNNNNNGG 2 cut(s) 62, 719
AgsI TTSAA 4 cut(s) 286, 320, 622, 673
AjnI CCWGG 1 cut(s) 197
AjuI GAANNNNNNNTTGG 2 cut(s) 551, 583
AluBI AGCT 1 cut(s) 437
AluI AGCT 1 cut(s) 437
Alw21I GWGCWC 1 cut(s) 120
Alw26I GTCTC 3 cut(s) 76, 161, 369
Alw44I GTGCAC 1 cut(s) 116
AlwI GGATC 2 cut(s) 73, 437
Ama87I CYCGRG 1 cut(s) 38
AoxI GGCC 3 cut(s) 241, 487, 649
ApaLI GTGCAC 1 cut(s) 116
ApeKI GCWGC 4 cut(s) 100, 437, 531, 728
ApoI RAATTY 1 cut(s) 538
Asp700I GAANNNNTTC 1 cut(s) 478
AspLEI GCGC 1 cut(s) 100
AspS9I GGNCC 1 cut(s) 347
AsuNHI GCTAGC 1 cut(s) 4
AvaI CYCGRG 1 cut(s) 38
AvaII GGWCC 1 cut(s) 347
BaeGI GKGCMC 1 cut(s) 120
BanI GGYRCC 2 cut(s) 628, 662
BanII GRGCYC 2 cut(s) 38, 56
Bbv12I GWGCWC 1 cut(s) 120
BbvCI CCTCAGC 1 cut(s) 684
BbvI GCAGC 4 cut(s) 112, 424, 518, 715
BccI CCATC 3 cut(s) 80, 443, 498
BciT130I CCWGG 1 cut(s) 199
BclI TGATCA 2 cut(s) 306, 361
BcoDI GTCTC 3 cut(s) 76, 161, 369
BfaI CTAG 1 cut(s) 5
BfmI CTRYAG 1 cut(s) 47
BisI GCNGC 4 cut(s) 101, 438, 532, 729
BlsI GCNGC 4 cut(s) 102, 439, 533, 730
Bme1390I CCNGG 1 cut(s) 199
Bme18I GGWCC 1 cut(s) 347
BmeT110I CYCGRG 1 cut(s) 38
BmgT120I GGNCC 1 cut(s) 347
BmiI GGNNCC 2 cut(s) 630, 664
BmrFI CCNGG 1 cut(s) 199
BmsI GCATC 4 cut(s) 499, 613, 670, 717
BmtI GCTAGC 1 cut(s) 8
BpmI CTGGAG 1 cut(s) 603
Bpu10I CCTNAGC 1 cut(s) 684
BpuEI CTTGAG 2 cut(s) 251, 610
BsaI GGTCTC 1 cut(s) 161
BsaJI CCNNGG 5 cut(s) 39, 197, 238, 382, 632
Bsc4I CCNNNNNNNGG 2 cut(s) 62, 719
Bse1I ACTGG 1 cut(s) 740
BseBI CCWGG 1 cut(s) 199
BseDI CCNNGG 5 cut(s) 39, 197, 238, 382, 632
BseGI GGATG 4 cut(s) 378, 569, 604, 708
BseLI CCNNNNNNNGG 2 cut(s) 62, 719
BseMII CTCAG 2 cut(s) 326, 675
BseNI ACTGG 1 cut(s) 740
BseRI GAGGAG 1 cut(s) 607
BseSI GKGCMC 1 cut(s) 120
BseXI GCAGC 4 cut(s) 112, 424, 518, 715
Bsh1236I CGCG 1 cut(s) 98
BshFI GGCC 3 cut(s) 243, 489, 651
BshNI GGYRCC 2 cut(s) 628, 662
BsiHKAI GWGCWC 1 cut(s) 120
BsiHKCI CYCGRG 1 cut(s) 38
BslI CCNNNNNNNGG 2 cut(s) 62, 719
BsmAI GTCTC 3 cut(s) 76, 161, 369
BsnI GGCC 3 cut(s) 243, 489, 651
Bso31I GGTCTC 1 cut(s) 161
BsoBI CYCGRG 1 cut(s) 38
Bsp1286I GDGCHC 3 cut(s) 38, 56, 120
Bsp143I GATC 5 cut(s) 65, 306, 340, 361, 442
BspACI CCGC 3 cut(s) 209, 534, 626
BspANI GGCC 3 cut(s) 243, 489, 651
BspCNI CTCAG 2 cut(s) 327, 676
BspFNI CGCG 1 cut(s) 98
BspLI GGNNCC 2 cut(s) 630, 664
BspMAI CTGCAG 1 cut(s) 51
BspOI GCTAGC 1 cut(s) 8
BspPI GGATC 2 cut(s) 73, 437
BspQI GCTCTTC 2 cut(s) 154, 267
BspT107I GGYRCC 2 cut(s) 628, 662
BspTNI GGTCTC 1 cut(s) 161
BsrI ACTGG 1 cut(s) 740
BssECI CCNNGG 5 cut(s) 39, 197, 238, 382, 632
BssMI GATC 5 cut(s) 65, 306, 340, 361, 442
BssT1I CCWWGG 3 cut(s) 238, 382, 632
Bst2UI CCWGG 1 cut(s) 199
Bst4CI ACNGT 2 cut(s) 136, 413
Bst6I CTCTTC 3 cut(s) 154, 195, 267
BstAPI GCANNNNNTGC 1 cut(s) 509
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 4 cut(s) 30, 335, 684, 690
BstF5I GGATG 4 cut(s) 378, 569, 604, 708
BstFNI CGCG 1 cut(s) 98
BstHHI GCGC 1 cut(s) 100
BstKTI GATC 5 cut(s) 68, 309, 343, 364, 445
BstMAI GTCTC 3 cut(s) 76, 161, 369
BstMBI GATC 5 cut(s) 65, 306, 340, 361, 442
BstMWI GCNNNNNNNGC 2 cut(s) 422, 509
BstNI CCWGG 1 cut(s) 199
BstSCI CCNGG 1 cut(s) 197
BstSFI CTRYAG 1 cut(s) 47
BstSLI GKGCMC 1 cut(s) 120
BstUI CGCG 1 cut(s) 98
BstV1I GCAGC 4 cut(s) 112, 424, 518, 715
BstXI CCANNNNNNTGG 1 cut(s) 659
BsuRI GGCC 3 cut(s) 243, 489, 651
BtsCI GGATG 4 cut(s) 378, 569, 604, 708
BtsIMutI CAGTG 2 cut(s) 132, 418
Cac8I GCNNGC 1 cut(s) 6
CfoI GCGC 1 cut(s) 100
Cfr13I GGNCC 1 cut(s) 347
DdeI CTNAG 4 cut(s) 30, 335, 684, 690
DpnI GATC 5 cut(s) 67, 308, 342, 363, 444
DpnII GATC 5 cut(s) 65, 306, 340, 361, 442
Eam1104I CTCTTC 3 cut(s) 154, 195, 267
EarI CTCTTC 3 cut(s) 154, 195, 267
Eco130I CCWWGG 3 cut(s) 238, 382, 632
Eco24I GRGCYC 2 cut(s) 38, 56
Eco31I GGTCTC 1 cut(s) 161
Eco47I GGWCC 1 cut(s) 347
Eco57I CTGAAG 1 cut(s) 504
Eco88I CYCGRG 1 cut(s) 38
EcoO109I RGGNCCY 1 cut(s) 347
EcoRI GAATTC 1 cut(s) 538
EcoRII CCWGG 1 cut(s) 197
EcoT14I CCWWGG 3 cut(s) 238, 382, 632
EcoT38I GRGCYC 2 cut(s) 38, 56
ErhI CCWWGG 3 cut(s) 238, 382, 632
FaiI YATR 3 cut(s) 279, 325, 408
FalI AAGNNNNNCTT 2 cut(s) 477, 509
FauI CCCGC 1 cut(s) 527
FbaI TGATCA 2 cut(s) 306, 361
Fnu4HI GCNGC 4 cut(s) 101, 438, 532, 729
FokI GGATG 4 cut(s) 365, 576, 591, 695
FriOI GRGCYC 2 cut(s) 38, 56
Fsp4HI GCNGC 4 cut(s) 101, 438, 532, 729
FspBI CTAG 1 cut(s) 5
GlaI GCGC 1 cut(s) 99
GluI GCNGC 4 cut(s) 101, 438, 532, 729
GsuI CTGGAG 1 cut(s) 603
HaeIII GGCC 3 cut(s) 243, 489, 651
HhaI GCGC 1 cut(s) 100
Hin6I GCGC 1 cut(s) 98
HinP1I GCGC 1 cut(s) 98
HincII GTYRAC 1 cut(s) 741
HindII GTYRAC 1 cut(s) 741
HinfI GANTC 3 cut(s) 479, 698, 717
Hpy166II GTNNAC 3 cut(s) 118, 217, 741
Hpy188I TCNGA 3 cut(s) 81, 336, 484
Hpy188III TCNNGA 4 cut(s) 63, 173, 446, 582
Hpy8I GTNNAC 3 cut(s) 118, 217, 741
HpyAV CCTTC 5 cut(s) 132, 479, 520, 616, 688
HpyCH4III ACNGT 2 cut(s) 136, 413
HpyCH4V TGCA 6 cut(s) 49, 118, 395, 503, 512, 548
HpyF10VI GCNNNNNNNGC 2 cut(s) 422, 509
HpyF3I CTNAG 4 cut(s) 30, 335, 684, 690
HspAI GCGC 1 cut(s) 98
Ksp22I TGATCA 2 cut(s) 306, 361
Kzo9I GATC 5 cut(s) 65, 306, 340, 361, 442
LguI GCTCTTC 2 cut(s) 154, 267
Lsp1109I GCAGC 4 cut(s) 112, 424, 518, 715
LweI GCATC 4 cut(s) 499, 613, 670, 717
MaeI CTAG 1 cut(s) 5
MaeIII GTNAC 2 cut(s) 130, 596
MalI GATC 5 cut(s) 67, 308, 342, 363, 444
MboI GATC 5 cut(s) 65, 306, 340, 361, 442
MboII GAAGA 8 cut(s) 117, 141, 182, 185, 254, 457, 535, 562
MhlI GDGCHC 3 cut(s) 38, 56, 120
MluCI AATT 3 cut(s) 139, 538, 667
MlyI GAGTC 1 cut(s) 726
MnlI CCTC 9 cut(s) 34, 66, 121, 198, 338, 578, 585, 589, 679
MroXI GAANNNNTTC 1 cut(s) 478
MspR9I CCNGG 1 cut(s) 199
MvaI CCWGG 1 cut(s) 199
MvnI CGCG 1 cut(s) 98
MwoI GCNNNNNNNGC 2 cut(s) 422, 509
NdeII GATC 5 cut(s) 65, 306, 340, 361, 442
NheI GCTAGC 1 cut(s) 4
NlaIV GGNNCC 2 cut(s) 630, 664
NmeAIII GCCGAG 1 cut(s) 53
NmuCI GTSAC 1 cut(s) 130
PciSI GCTCTTC 2 cut(s) 154, 267
PdmI GAANNNNTTC 1 cut(s) 478
PfeI GAWTC 2 cut(s) 479, 698
PkrI GCNGC 4 cut(s) 102, 439, 533, 730
PleI GAGTC 1 cut(s) 725
PpsI GAGTC 1 cut(s) 725
PpuMI RGGWCCY 1 cut(s) 347
Psp5II RGGWCCY 1 cut(s) 347
Psp6I CCWGG 1 cut(s) 197
PspGI CCWGG 1 cut(s) 197
PspN4I GGNNCC 2 cut(s) 630, 664
PspPI GGNCC 1 cut(s) 347
PspPPI RGGWCCY 1 cut(s) 347
PstI CTGCAG 1 cut(s) 51
SapI GCTCTTC 2 cut(s) 154, 267
SatI GCNGC 4 cut(s) 101, 438, 532, 729
Sau3AI GATC 5 cut(s) 65, 306, 340, 361, 442
Sau96I GGNCC 1 cut(s) 347
SchI GAGTC 1 cut(s) 726
ScrFI CCNGG 1 cut(s) 199
SduI GDGCHC 3 cut(s) 38, 56, 120
SetI ASST 4 cut(s) 349, 369, 439, 678
SfaNI GCATC 4 cut(s) 499, 613, 670, 717
SfcI CTRYAG 1 cut(s) 47
SinI GGWCC 1 cut(s) 347
SmlI CTYRAG 2 cut(s) 266, 589
SmoI CTYRAG 2 cut(s) 266, 589
Sse9I AATT 3 cut(s) 139, 538, 667
SsiI CCGC 3 cut(s) 209, 534, 626
SspMI CTAG 1 cut(s) 5
StyD4I CCNGG 1 cut(s) 197
StyI CCWWGG 3 cut(s) 238, 382, 632
TaaI ACNGT 2 cut(s) 136, 413
TaqI TCGA 3 cut(s) 15, 343, 701
TasI AATT 3 cut(s) 139, 538, 667
TfiI GAWTC 2 cut(s) 479, 698
TscAI CASTG 2 cut(s) 139, 418
TseFI GTSAC 1 cut(s) 130
TseI GCWGC 4 cut(s) 100, 437, 531, 728
Tsp45I GTSAC 1 cut(s) 130
TspDTI ATGAA 1 cut(s) 315
TspGWI ACGGA 1 cut(s) 450
TspRI CASTG 2 cut(s) 139, 418
VneI GTGCAC 1 cut(s) 116
VpaK11BI GGWCC 1 cut(s) 347
XapI RAATTY 1 cut(s) 538
XmnI GAANNNNTTC 1 cut(s) 478
XspI CTAG 1 cut(s) 5
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.