Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009993

Physical Location & Seq

Genomic Coordinates Forward (+)

8242256 .. 8243372

Gene Structure 1117 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G23130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGGAGAGATCAAACAGCATAGAGTTGAGGAACAGCTTCTATGGCCGTGCAAGAACTTCACCATGGAGCTATGGAGATTATGATAATTGCCAACAGGATCATGATTATCTTCTAGGGTTTTCATGGCCACCAAGATCCTACACTTGCAGCTTCTGCAAAAGGGAATTCAGATCGGCTCAAGCACTTGGTGGCCACATGAATGTTCACAGAAGAGACAGAGCAAGACTCAGATTACAACAGTCTCCATCATCATCTTCAACACCTTCTCCTCCTTACCCTAACCCTAATTACTCTTACTCAACCATGGCAAACTCTCCTCCTCCTCATCATTCTCCTCTAACCCTATTTCCAACCCTTTCTCCTCCATCCTCACCAAGATATAGGGCAGGTTTGATCCGTTCCTTGAGCCCCAAGTCAAAACATACACCAGAAAACGCTTGTAAGACTAAGAAATCATCTCTTTTAGTGGAGGCTGGAGAGGCTACAAGGTTCACCAGTAAAGATGCTTGCAAGATCCTGAGGAATGATGAAATCATCAGCTTGGAGCTTGAGATTGGTTTGATTAACGAATCAGAGCAAGATCTGGATCTAGAACTCCGTTTGGGTTTCGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0008361 GO:0009653 GO:0009719 GO:0009725 GO:0009755 GO:0009791 GO:0009889 GO:0009908 GO:0009987 GO:0010033 GO:0010093 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032535 GO:0032870 GO:0042127 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048444 GO:0048449 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048859 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071495 GO:0071840 GO:0080090 GO:0090066 GO:0090567 GO:0090691 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

204

Amino Acids

23.08

Weight (kDa)

8.99

Isoelectric Point (pI)

77.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	47 - 71	6e-07	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009993)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23130
fragaria_vesca	FvH4_3g12221 FvH4_3g12221 FvH4_3g12221 FvH4_3g12221 FvH4_3g12221 FvH4_4g03010
malus_domestica	MD13G1209400.v1.1 MD16G1212200.v1.1
prunus_persica	Prupe.1G034100_v2.0.a1 Prupe.1G034100_v2.0.a1
pyrus_communis	pycom16g17820
rosa_chinensis	RchiOBHm_Chr4g0391201
rosa_laevigata	RLG00000009878
rosa_multiflora	Rmu_sc0000040.1_g000012
rosa_roxburghii	Rroxscaffold_5G00336990
rosa_rugosa	Rorug03G0335100
rosa_samantha	Rh4BG030800 Rh4CG039100 Rh4DG033500
rosa_wichuraiana	Rw4G002810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	377
AclWI	GGATC	5 cut(s)	105, 129, 388, 508, 594
AcoI	YGGCCR	3 cut(s)	43, 125, 190
AcsI	RAATTY	1 cut(s)	164
AdeI	CACNNNGTG	1 cut(s)	188
AgsI	TTSAA	1 cut(s)	258
AluBI	AGCT	5 cut(s)	36, 69, 150, 540, 547
AluI	AGCT	5 cut(s)	36, 69, 150, 540, 547
Alw26I	GTCTC	2 cut(s)	207, 246
AlwI	GGATC	5 cut(s)	105, 129, 388, 508, 594
AlwNI	CAGNNNCTG	1 cut(s)	153
AoxI	GGCC	3 cut(s)	43, 125, 190
ApeKI	GCWGC	1 cut(s)	147
ApoI	RAATTY	1 cut(s)	164
Asp700I	GAANNNNTTC	1 cut(s)	35
AsuHPI	GGTGA	3 cut(s)	51, 363, 484
AxyI	CCTNAGG	1 cut(s)	518
BalI	TGGCCA	2 cut(s)	127, 192
BanII	GRGCYC	1 cut(s)	410
BbvI	GCAGC	1 cut(s)	159
BccI	CCATC	2 cut(s)	253, 373
BceAI	ACGGC	1 cut(s)	30
BcoDI	GTCTC	2 cut(s)	207, 246
BfaI	CTAG	2 cut(s)	113, 590
BfuAI	ACCTGC	1 cut(s)	377
BglII	AGATCT	1 cut(s)	580
BisI	GCNGC	1 cut(s)	148
BlsI	GCNGC	1 cut(s)	149
BmsI	GCATC	1 cut(s)	493
BplI	GAGNNNNNCTC	2 cut(s)	210, 242
BpmI	CTGGAG	1 cut(s)	495
BpuEI	CTTGAG	3 cut(s)	162, 424, 569
BsaBI	GATNNNNATC	1 cut(s)	585
BsaJI	CCNNGG	2 cut(s)	62, 303
BsaXI	ACNNNNNCTCC	4 cut(s)	250, 280, 343, 373
Bse1I	ACTGG	1 cut(s)	495
Bse21I	CCTNAGG	1 cut(s)	518
Bse8I	GATNNNNATC	1 cut(s)	585
BseDI	CCNNGG	2 cut(s)	62, 303
BseGI	GGATG	1 cut(s)	365
BseJI	GATNNNNATC	1 cut(s)	585
BseMII	CTCAG	2 cut(s)	241, 509
BseNI	ACTGG	1 cut(s)	495
BseRI	GAGGAG	6 cut(s)	258, 306, 309, 312, 324, 351
BseXI	GCAGC	1 cut(s)	159
BshFI	GGCC	3 cut(s)	45, 127, 192
BsmAI	GTCTC	2 cut(s)	207, 246
BsnI	GGCC	3 cut(s)	45, 127, 192
Bsp1286I	GDGCHC	1 cut(s)	410
Bsp143I	GATC	8 cut(s)	8, 97, 134, 170, 393, 513, 580, 586
Bsp19I	CCATGG	2 cut(s)	62, 303
BspANI	GGCC	3 cut(s)	45, 127, 192
BspCNI	CTCAG	2 cut(s)	240, 510
BspHI	TCATGA	1 cut(s)	100
BspMI	ACCTGC	1 cut(s)	377
BspPI	GGATC	5 cut(s)	105, 129, 388, 508, 594
BsrI	ACTGG	1 cut(s)	495
BssECI	CCNNGG	2 cut(s)	62, 303
BssMI	GATC	8 cut(s)	8, 97, 134, 170, 393, 513, 580, 586
BssT1I	CCWWGG	2 cut(s)	62, 303
Bst4CI	ACNGT	1 cut(s)	240
Bst6I	CTCTTC	1 cut(s)	205
BstAPI	GCANNNNNTGC	1 cut(s)	153
BstC8I	GCNNGC	1 cut(s)	508
BstDEI	CTNAG	3 cut(s)	227, 447, 518
BstDSI	CCRYGG	2 cut(s)	62, 303
BstF5I	GGATG	1 cut(s)	365
BstKTI	GATC	8 cut(s)	11, 100, 137, 173, 396, 516, 583, 589
BstMAI	GTCTC	2 cut(s)	207, 246
BstMBI	GATC	8 cut(s)	8, 97, 134, 170, 393, 513, 580, 586
BstMWI	GCNNNNNNNGC	3 cut(s)	42, 153, 479
BstV1I	GCAGC	1 cut(s)	159
BstX2I	RGATCY	4 cut(s)	134, 513, 580, 586
BstYI	RGATCY	4 cut(s)	134, 513, 580, 586
Bsu36I	CCTNAGG	1 cut(s)	518
BsuRI	GGCC	3 cut(s)	45, 127, 192
BtgI	CCRYGG	2 cut(s)	62, 303
BtsCI	GGATG	1 cut(s)	365
BveI	ACCTGC	1 cut(s)	377
Cac8I	GCNNGC	1 cut(s)	508
CaiI	CAGNNNCTG	1 cut(s)	153
CciI	TCATGA	1 cut(s)	100
CviAII	CATG	5 cut(s)	63, 101, 123, 196, 304
DdeI	CTNAG	3 cut(s)	227, 447, 518
DpnI	GATC	8 cut(s)	10, 99, 136, 172, 395, 515, 582, 588
DpnII	GATC	8 cut(s)	8, 97, 134, 170, 393, 513, 580, 586
DraIII	CACNNNGTG	1 cut(s)	188
EaeI	YGGCCR	3 cut(s)	43, 125, 190
Eam1104I	CTCTTC	1 cut(s)	205
EarI	CTCTTC	1 cut(s)	205
Eco130I	CCWWGG	2 cut(s)	62, 303
Eco24I	GRGCYC	1 cut(s)	410
Eco81I	CCTNAGG	1 cut(s)	518
EcoRI	GAATTC	1 cut(s)	164
EcoT14I	CCWWGG	2 cut(s)	62, 303
EcoT38I	GRGCYC	1 cut(s)	410
ErhI	CCWWGG	2 cut(s)	62, 303
FaeI	CATG	5 cut(s)	66, 104, 126, 199, 307
FatI	CATG	5 cut(s)	62, 100, 122, 195, 303
Fnu4HI	GCNGC	1 cut(s)	148
FokI	GGATG	1 cut(s)	352
FriOI	GRGCYC	1 cut(s)	410
Fsp4HI	GCNGC	1 cut(s)	148
FspBI	CTAG	2 cut(s)	113, 590
GluI	GCNGC	1 cut(s)	148
GsuI	CTGGAG	1 cut(s)	495
HaeIII	GGCC	3 cut(s)	45, 127, 192
Hin1II	CATG	5 cut(s)	66, 104, 126, 199, 307
HinfI	GANTC	2 cut(s)	225, 569
HphI	GGTGA	3 cut(s)	51, 363, 484
Hpy166II	GTNNAC	2 cut(s)	205, 492
Hpy188I	TCNGA	3 cut(s)	170, 230, 574
Hpy188III	TCNNGA	4 cut(s)	101, 517, 584, 590
Hpy8I	GTNNAC	2 cut(s)	205, 492
HpyAV	CCTTC	1 cut(s)	273
HpyCH4III	ACNGT	1 cut(s)	240
HpyCH4V	TGCA	4 cut(s)	50, 147, 156, 510
HpyF10VI	GCNNNNNNNGC	3 cut(s)	42, 153, 479
HpyF3I	CTNAG	3 cut(s)	227, 447, 518
Hsp92II	CATG	5 cut(s)	66, 104, 126, 199, 307
Kzo9I	GATC	8 cut(s)	8, 97, 134, 170, 393, 513, 580, 586
LmnI	GCTCC	2 cut(s)	66, 544
LpnPI	CCDG	7 cut(s)	80, 372, 441, 459, 508, 530, 569
Lsp1109I	GCAGC	1 cut(s)	159
LweI	GCATC	1 cut(s)	493
MaeI	CTAG	2 cut(s)	113, 590
MalI	GATC	8 cut(s)	10, 99, 136, 172, 395, 515, 582, 588
MboI	GATC	8 cut(s)	8, 97, 134, 170, 393, 513, 580, 586
MboII	GAAGA	3 cut(s)	101, 222, 246
MflI	RGATCY	4 cut(s)	134, 513, 580, 586
MhlI	GDGCHC	1 cut(s)	410
MlsI	TGGCCA	2 cut(s)	127, 192
MluCI	AATT	3 cut(s)	85, 164, 286
MluNI	TGGCCA	2 cut(s)	127, 192
MlyI	GAGTC	1 cut(s)	219
MmeI	TCCRAC	1 cut(s)	374
Mox20I	TGGCCA	2 cut(s)	127, 192
MroXI	GAANNNNTTC	1 cut(s)	35
MscI	TGGCCA	2 cut(s)	127, 192
MseI	TTAA	2 cut(s)	564, 613
MslI	CAYNNNNRTG	1 cut(s)	198
Msp20I	TGGCCA	2 cut(s)	127, 192
MwoI	GCNNNNNNNGC	3 cut(s)	42, 153, 479
NcoI	CCATGG	2 cut(s)	62, 303
NdeII	GATC	8 cut(s)	8, 97, 134, 170, 393, 513, 580, 586
NlaIII	CATG	5 cut(s)	66, 104, 126, 199, 307
PagI	TCATGA	1 cut(s)	100
PdmI	GAANNNNTTC	1 cut(s)	35
PfeI	GAWTC	1 cut(s)	569
PkrI	GCNGC	1 cut(s)	149
PleI	GAGTC	1 cut(s)	219
PpsI	GAGTC	1 cut(s)	219
PstNI	CAGNNNCTG	1 cut(s)	153
PsuI	RGATCY	4 cut(s)	134, 513, 580, 586
RseI	CAYNNNNRTG	1 cut(s)	198
SaqAI	TTAA	2 cut(s)	564, 613
SatI	GCNGC	1 cut(s)	148
Sau3AI	GATC	8 cut(s)	8, 97, 134, 170, 393, 513, 580, 586
SchI	GAGTC	1 cut(s)	219
SduI	GDGCHC	1 cut(s)	410
SetI	ASST	8 cut(s)	38, 71, 152, 265, 391, 491, 542, 549
SfaNI	GCATC	1 cut(s)	493
SmiMI	CAYNNNNRTG	1 cut(s)	198
SmlI	CTYRAG	3 cut(s)	177, 403, 548
SmoI	CTYRAG	3 cut(s)	177, 403, 548
Sse9I	AATT	3 cut(s)	85, 164, 286
SspMI	CTAG	2 cut(s)	113, 590
StyI	CCWWGG	2 cut(s)	62, 303
TaaI	ACNGT	1 cut(s)	240
TasI	AATT	3 cut(s)	85, 164, 286
TfiI	GAWTC	1 cut(s)	569
Tru1I	TTAA	2 cut(s)	564, 613
Tru9I	TTAA	2 cut(s)	564, 613
TseI	GCWGC	1 cut(s)	147
TspDTI	ATGAA	3 cut(s)	111, 212, 543
TspGWI	ACGGA	2 cut(s)	386, 587
XapI	RAATTY	1 cut(s)	164
XbaI	TCTAGA	1 cut(s)	589
XmnI	GAANNNNTTC	1 cut(s)	35
XspI	CTAG	2 cut(s)	113, 590

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.