Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0009993

Physical Location & Seq

Genomic Coordinates Forward (+)

14062405 .. 14063118

Gene Structure 714 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g17820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGGAGAAAAAGAGTTTGGTGAGCAACAGCTTGAAGGATAGTGCTGGTATTGTCACCAGAACCATTAGGAGCAGCAAGACTGCGTATGAAGAAGAAGATTACAATACTGATGGGTTTTCATGGCCCCCAAGATCGTACGCTTGTAGCTTCTGCAAAAGAGAATTTAGATCTGCTCAAGCTCTTGGTGGCCATATGAATGTTCACCGAAGAGATCGAGCCAGGCTCAAAGGCTCATCCCCAAGAGACGGTCAGCACGCTAGCACTATTCTTAACCTTAACCTCAACAAAGTGCCAAACCCTAACCCTAATTTTTCATCAACACCATCACCAACCTCACCATCCTCCTTGATTTCACCATTTAGTAGCACATTACCCTCTTTGGTATCACCATCAGCTCCTCCTTCACCTACTTTTTTGGTGTCATCTAGCGAAAATATGAAATGGGTTGTGGGAGACACCATTTTTAATCACCCTCTAAACCTCAAAGGCTCGGATCTTGGCACTAAAGTGAAGAAGAGTGCAAAATCATTTTGTGAAGTAGGAGATCGTCAACGTGATGGTTTCATTGGAGAAGAAGAACATGGGTGCATAAAGACTTTCAAGGCAGCTGATCATCCTCATCATCCGATTCTTAGGTTGGGCTTGGAGATTGGTCTGCCTGGTGACTCAAATAAGGAGGACTTAGATTTGGAACTTCGATTGGGATACTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0008361 GO:0009653 GO:0009719 GO:0009725 GO:0009755 GO:0009791 GO:0009889 GO:0009908 GO:0009987 GO:0010033 GO:0010093 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032535 GO:0032870 GO:0042127 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048444 GO:0048449 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048859 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071495 GO:0071840 GO:0080090 GO:0090066 GO:0090567 GO:0090691 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

238

Amino Acids

25.97

Weight (kDa)

8.86

Isoelectric Point (pI)

54.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	46 - 70	9.1e-07	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009993)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23130
fragaria_vesca	FvH4_3g12221 FvH4_3g12221 FvH4_3g12221 FvH4_3g12221 FvH4_3g12221 FvH4_4g03010
malus_domestica	MD13G1209400.v1.1 MD16G1212200.v1.1
prunus_persica	Prupe.1G034100_v2.0.a1 Prupe.1G034100_v2.0.a1
pyrus_communis	pycom16g17820
rosa_chinensis	RchiOBHm_Chr4g0391201
rosa_laevigata	RLG00000009878
rosa_multiflora	Rmu_sc0000040.1_g000012
rosa_roxburghii	Rroxscaffold_5G00336990
rosa_rugosa	Rorug03G0335100
rosa_samantha	Rh4BG030800 Rh4CG039100 Rh4DG033500
rosa_wichuraiana	Rw4G002810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	501
AcoI	YGGCCR	1 cut(s)	187
AcsI	RAATTY	1 cut(s)	161
AfaI	GTAC	1 cut(s)	137
AfiI	CCNNNNNNNGG	1 cut(s)	245
AgsI	TTSAA	2 cut(s)	34, 601
AjnI	CCWGG	2 cut(s)	218, 658
AjuI	GAANNNNNNNTTGG	1 cut(s)	31
AleI	CACNNNNGTG	1 cut(s)	506
AluBI	AGCT	5 cut(s)	30, 147, 179, 395, 608
AluI	AGCT	5 cut(s)	30, 147, 179, 395, 608
Alw26I	GTCTC	2 cut(s)	237, 447
AlwI	GGATC	1 cut(s)	501
AoxI	GGCC	2 cut(s)	122, 187
ApeKI	GCWGC	2 cut(s)	72, 605
ApoI	RAATTY	1 cut(s)	161
AspS9I	GGNCC	1 cut(s)	123
AsuNHI	GCTAGC	1 cut(s)	257
BalI	TGGCCA	1 cut(s)	189
BbvI	GCAGC	2 cut(s)	84, 617
BccI	CCATC	5 cut(s)	104, 331, 346, 397, 551
BciT130I	CCWGG	2 cut(s)	220, 660
BciVI	GTATCC	1 cut(s)	698
BclI	TGATCA	1 cut(s)	610
BcoDI	GTCTC	2 cut(s)	237, 447
BfaI	CTAG	3 cut(s)	258, 426, 712
BfuI	GTATCC	1 cut(s)	698
BglII	AGATCT	1 cut(s)	167
BisI	GCNGC	2 cut(s)	73, 606
BlsI	GCNGC	2 cut(s)	74, 607
Bme1390I	CCNGG	2 cut(s)	220, 660
BmgT120I	GGNCC	1 cut(s)	123
BmiI	GGNNCC	1 cut(s)	125
BmrFI	CCNGG	2 cut(s)	220, 660
BmtI	GCTAGC	1 cut(s)	261
BplI	GAGNNNNNCTC	2 cut(s)	207, 239
BpuEI	CTTGAG	1 cut(s)	159
Bsc4I	CCNNNNNNNGG	1 cut(s)	245
BseBI	CCWGG	2 cut(s)	220, 660
BseGI	GGATG	4 cut(s)	233, 338, 613, 622
BseLI	CCNNNNNNNGG	1 cut(s)	245
BseRI	GAGGAG	1 cut(s)	387
BseXI	GCAGC	2 cut(s)	84, 617
BshFI	GGCC	2 cut(s)	124, 189
BsiWI	CGTACG	1 cut(s)	135
BslI	CCNNNNNNNGG	1 cut(s)	245
BsmAI	GTCTC	2 cut(s)	237, 447
BsmBI	CGTCTC	1 cut(s)	237
BsnI	GGCC	2 cut(s)	124, 189
Bsp143I	GATC	6 cut(s)	131, 167, 211, 493, 544, 610
BspANI	GGCC	2 cut(s)	124, 189
BspLI	GGNNCC	1 cut(s)	125
BspOI	GCTAGC	1 cut(s)	261
BspPI	GGATC	1 cut(s)	501
BssMI	GATC	6 cut(s)	131, 167, 211, 493, 544, 610
Bst2UI	CCWGG	2 cut(s)	220, 660
Bst4CI	ACNGT	1 cut(s)	248
Bst6I	CTCTTC	2 cut(s)	202, 509
BstC8I	GCNNGC	2 cut(s)	255, 259
BstDEI	CTNAG	2 cut(s)	632, 682
BstF5I	GGATG	4 cut(s)	233, 338, 613, 622
BstKTI	GATC	6 cut(s)	134, 170, 214, 496, 547, 613
BstMAI	GTCTC	2 cut(s)	237, 447
BstMBI	GATC	6 cut(s)	131, 167, 211, 493, 544, 610
BstNI	CCWGG	2 cut(s)	220, 660
BstSCI	CCNGG	2 cut(s)	218, 658
BstV1I	GCAGC	2 cut(s)	84, 617
BstX2I	RGATCY	2 cut(s)	167, 493
BstYI	RGATCY	2 cut(s)	167, 493
BsuI	GTATCC	1 cut(s)	698
BsuRI	GGCC	2 cut(s)	124, 189
BtsCI	GGATG	4 cut(s)	233, 338, 613, 622
Cac8I	GCNNGC	2 cut(s)	255, 259
Cfr13I	GGNCC	1 cut(s)	123
Csp6I	GTAC	1 cut(s)	136
CviAII	CATG	2 cut(s)	120, 581
CviQI	GTAC	1 cut(s)	136
DdeI	CTNAG	2 cut(s)	632, 682
DpnI	GATC	6 cut(s)	133, 169, 213, 495, 546, 612
DpnII	GATC	6 cut(s)	131, 167, 211, 493, 544, 610
EaeI	YGGCCR	1 cut(s)	187
Eam1104I	CTCTTC	2 cut(s)	202, 509
EarI	CTCTTC	2 cut(s)	202, 509
EcoRII	CCWGG	2 cut(s)	218, 658
Esp3I	CGTCTC	1 cut(s)	237
FaeI	CATG	2 cut(s)	123, 584
FaiI	YATR	7 cut(s)	87, 121, 192, 194, 437, 582, 590
FalI	AAGNNNNNCTT	2 cut(s)	665, 697
FatI	CATG	2 cut(s)	119, 580
FauNDI	CATATG	1 cut(s)	192
FbaI	TGATCA	1 cut(s)	610
Fnu4HI	GCNGC	2 cut(s)	73, 606
FokI	GGATG	4 cut(s)	220, 325, 600, 609
Fsp4HI	GCNGC	2 cut(s)	73, 606
FspBI	CTAG	3 cut(s)	258, 426, 712
GluI	GCNGC	2 cut(s)	73, 606
HaeIII	GGCC	2 cut(s)	124, 189
Hin1II	CATG	2 cut(s)	123, 584
HincII	GTYRAC	1 cut(s)	551
HindII	GTYRAC	1 cut(s)	551
HinfI	GANTC	2 cut(s)	628, 665
Hpy166II	GTNNAC	2 cut(s)	202, 551
Hpy188I	TCNGA	2 cut(s)	493, 627
Hpy8I	GTNNAC	2 cut(s)	202, 551
HpyAV	CCTTC	2 cut(s)	28, 411
HpyCH4III	ACNGT	1 cut(s)	248
HpyCH4IV	ACGT	1 cut(s)	553
HpyCH4V	TGCA	3 cut(s)	153, 521, 588
HpyF3I	CTNAG	2 cut(s)	632, 682
HpySE526I	ACGT	1 cut(s)	553
Hsp92II	CATG	2 cut(s)	123, 584
Ksp22I	TGATCA	1 cut(s)	610
Kzo9I	GATC	6 cut(s)	131, 167, 211, 493, 544, 610
LmnI	GCTCC	2 cut(s)	69, 400
LpnPI	CCDG	6 cut(s)	30, 70, 205, 232, 645, 672
Lsp1109I	GCAGC	2 cut(s)	84, 617
MaeI	CTAG	3 cut(s)	258, 426, 712
MaeII	ACGT	1 cut(s)	553
MaeIII	GTNAC	2 cut(s)	52, 662
MalI	GATC	6 cut(s)	133, 169, 213, 495, 546, 612
MboI	GATC	6 cut(s)	131, 167, 211, 493, 544, 610
MboII	GAAGA	8 cut(s)	101, 104, 107, 219, 523, 526, 584, 587
MflI	RGATCY	2 cut(s)	167, 493
MlsI	TGGCCA	1 cut(s)	189
MluCI	AATT	2 cut(s)	161, 307
MluNI	TGGCCA	1 cut(s)	189
MlyI	GAGTC	1 cut(s)	659
MnlI	CCTC	9 cut(s)	290, 343, 352, 385, 408, 483, 491, 627, 670
Mox20I	TGGCCA	1 cut(s)	189
MscI	TGGCCA	1 cut(s)	189
MseI	TTAA	3 cut(s)	270, 276, 465
MslI	CAYNNNNRTG	2 cut(s)	195, 506
Msp20I	TGGCCA	1 cut(s)	189
MspA1I	CMGCKG	1 cut(s)	608
MspR9I	CCNGG	2 cut(s)	220, 660
MvaI	CCWGG	2 cut(s)	220, 660
NdeI	CATATG	1 cut(s)	192
NdeII	GATC	6 cut(s)	131, 167, 211, 493, 544, 610
NheI	GCTAGC	1 cut(s)	257
NlaIII	CATG	2 cut(s)	123, 584
NlaIV	GGNNCC	1 cut(s)	125
NmuCI	GTSAC	2 cut(s)	52, 662
OliI	CACNNNNGTG	1 cut(s)	506
PfeI	GAWTC	1 cut(s)	628
Pfl23II	CGTACG	1 cut(s)	135
PkrI	GCNGC	2 cut(s)	74, 607
PleI	GAGTC	1 cut(s)	659
PpsI	GAGTC	1 cut(s)	659
Psp6I	CCWGG	2 cut(s)	218, 658
PspGI	CCWGG	2 cut(s)	218, 658
PspLI	CGTACG	1 cut(s)	135
PspN4I	GGNNCC	1 cut(s)	125
PspPI	GGNCC	1 cut(s)	123
PsuI	RGATCY	2 cut(s)	167, 493
PvuII	CAGCTG	1 cut(s)	608
RsaI	GTAC	1 cut(s)	137
RsaNI	GTAC	1 cut(s)	136
RseI	CAYNNNNRTG	2 cut(s)	195, 506
SaqAI	TTAA	3 cut(s)	270, 276, 465
SatI	GCNGC	2 cut(s)	73, 606
Sau3AI	GATC	6 cut(s)	131, 167, 211, 493, 544, 610
Sau96I	GGNCC	1 cut(s)	123
SchI	GAGTC	1 cut(s)	659
ScrFI	CCNGG	2 cut(s)	220, 660
SmiMI	CAYNNNNRTG	2 cut(s)	195, 506
SmlI	CTYRAG	1 cut(s)	174
SmoI	CTYRAG	1 cut(s)	174
Sse9I	AATT	2 cut(s)	161, 307
SspMI	CTAG	3 cut(s)	258, 426, 712
StyD4I	CCNGG	2 cut(s)	218, 658
TaaI	ACNGT	1 cut(s)	248
TaiI	ACGT	1 cut(s)	556
TaqI	TCGA	2 cut(s)	214, 697
TasI	AATT	2 cut(s)	161, 307
TfiI	GAWTC	1 cut(s)	628
Tru1I	TTAA	3 cut(s)	270, 276, 465
Tru9I	TTAA	3 cut(s)	270, 276, 465
TseFI	GTSAC	2 cut(s)	52, 662
TseI	GCWGC	2 cut(s)	72, 605
Tsp45I	GTSAC	2 cut(s)	52, 662
TspDTI	ATGAA	6 cut(s)	102, 108, 209, 303, 452, 553
XapI	RAATTY	1 cut(s)	161
XspI	CTAG	3 cut(s)	258, 426, 712

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.