Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0009993

Physical Location & Seq

Genomic Coordinates Forward (+)

39313842 .. 39314441

Gene Structure 600 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0335100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGTCCTCACCCACTCCCCGCCGCCGCTTCCCGCCGCTGTGCTGGACCGACGACGAGGCCCAAGCCCTCATCTCCGTCTTCAAGGTCAAGTGGTCCTCCCTCGGCCGCACCAATCTCAAAGCCAACGACTGGGATGACGTCGCCACCACCCTCGCCGCCCAATTCCCCCTCGTCTCCCCCTCCAAGACGGCCGCGCAGTGCCACAACAAGATCGAGAAGCTCCGCAAACGGTACCACTCCGAGAAGCAGCGGGCCTCGACCCGACCCGGTCGGTTCTCGCCATGGGCTTTGTATCGGTTTATGGAGGAATTGGAGGGCGAGTCTGGTAAGTCGGGCCACACGGCCAGTAAAGGTGAGGGGAATTCGAGTTCTAGGTTTTTAGCTGATTTGGATGAATTTGTTGATGTACGGAGTGGTGGTGGTGATGCTGGTTTTCCTGTGAAATCATTAGGTCATAGGAATTTGGCGCCTTTGTTTAATCCTAAAATGAAGTTGAAGAAGAATGAAAGCTCAGGGTATCTTCGAAAATTCAAAGGAGTGGATTCTAGTGGTGTTAAAGATTTGGGAGGGGGTTCGGGTTTGTTGAGGAGTGTTAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0008361 GO:0009653 GO:0009719 GO:0009725 GO:0009755 GO:0009791 GO:0009889 GO:0009908 GO:0009987 GO:0010033 GO:0010093 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032535 GO:0032870 GO:0042127 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048444 GO:0048449 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048859 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071495 GO:0071840 GO:0080090 GO:0090066 GO:0090567 GO:0090691 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

199

Amino Acids

21.96

Weight (kDa)

9.96

Isoelectric Point (pI)

52.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-bind_4	PF13837	14 - 104	3.1e-14	Myb/SANT-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009993)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23130
fragaria_vesca	FvH4_3g12221 FvH4_3g12221 FvH4_3g12221 FvH4_3g12221 FvH4_3g12221 FvH4_4g03010
malus_domestica	MD13G1209400.v1.1 MD16G1212200.v1.1
prunus_persica	Prupe.1G034100_v2.0.a1 Prupe.1G034100_v2.0.a1
pyrus_communis	pycom16g17820
rosa_chinensis	RchiOBHm_Chr4g0391201
rosa_laevigata	RLG00000009878
rosa_multiflora	Rmu_sc0000040.1_g000012
rosa_roxburghii	Rroxscaffold_5G00336990
rosa_rugosa	Rorug03G0335100
rosa_samantha	Rh4BG030800 Rh4CG039100 Rh4DG033500
rosa_wichuraiana	Rw4G002810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	141
Acc65I	GGTACC	1 cut(s)	231
AccB1I	GGYRCC	2 cut(s)	231, 466
AccB7I	CCANNNNNTGG	1 cut(s)	129
AccII	CGCG	1 cut(s)	194
AcoI	YGGCCR	3 cut(s)	103, 189, 342
AcsI	RAATTY	4 cut(s)	361, 395, 460, 527
AcyI	GRCGYC	2 cut(s)	138, 467
AfaI	GTAC	2 cut(s)	233, 408
AfiI	CCNNNNNNNGG	1 cut(s)	129
AgsI	TTSAA	3 cut(s)	82, 496, 532
AloI	GAACNNNNNNTCC	2 cut(s)	352, 384
AluBI	AGCT	3 cut(s)	220, 383, 510
AluI	AGCT	3 cut(s)	220, 383, 510
Alw26I	GTCTC	1 cut(s)	178
AoxI	GGCC	6 cut(s)	57, 103, 189, 252, 334, 342
ApeKI	GCWGC	1 cut(s)	247
ApoI	RAATTY	4 cut(s)	361, 395, 460, 527
Asp718I	GGTACC	1 cut(s)	231
AspLEI	GCGC	2 cut(s)	196, 469
AspS9I	GGNCC	5 cut(s)	45, 58, 93, 252, 334
AsuC2I	CCSGG	1 cut(s)	267
AsuHPI	GGTGA	2 cut(s)	365, 434
AsuII	TTCGAA	1 cut(s)	523
AvaII	GGWCC	2 cut(s)	45, 93
BanI	GGYRCC	2 cut(s)	231, 466
BbsI	GAAGAC	1 cut(s)	70
BbvI	GCAGC	1 cut(s)	259
BceAI	ACGGC	2 cut(s)	204, 357
BcnI	CCSGG	1 cut(s)	267
BcoDI	GTCTC	1 cut(s)	178
BfaI	CTAG	2 cut(s)	372, 546
BfoI	RGCGCY	1 cut(s)	470
BisI	GCNGC	7 cut(s)	22, 25, 35, 106, 156, 192, 248
BlsI	GCNGC	7 cut(s)	23, 26, 36, 107, 157, 193, 249
Bme1390I	CCNGG	1 cut(s)	267
Bme18I	GGWCC	2 cut(s)	45, 93
BmgT120I	GGNCC	5 cut(s)	45, 58, 93, 252, 334
BmiI	GGNNCC	2 cut(s)	233, 468
BmrFI	CCNGG	1 cut(s)	267
BmrI	ACTGGG	1 cut(s)	139
BmsI	GCATC	1 cut(s)	415
BmuI	ACTGGG	1 cut(s)	139
BpiI	GAAGAC	1 cut(s)	70
Bpu10I	CCTNAGC	1 cut(s)	511
Bpu14I	TTCGAA	1 cut(s)	523
BpuMI	CCSGG	1 cut(s)	267
BsaHI	GRCGYC	2 cut(s)	138, 467
BsaJI	CCNNGG	2 cut(s)	100, 281
BsaXI	ACNNNNNCTCC	4 cut(s)	305, 335, 403, 433
Bsc4I	CCNNNNNNNGG	1 cut(s)	129
Bse1I	ACTGG	2 cut(s)	134, 345
BseDI	CCNNGG	2 cut(s)	100, 281
BseGI	GGATG	2 cut(s)	139, 397
BseLI	CCNNNNNNNGG	1 cut(s)	129
BseMII	CTCAG	1 cut(s)	525
BseNI	ACTGG	2 cut(s)	134, 345
BseX3I	CGGCCG	2 cut(s)	103, 189
BseXI	GCAGC	1 cut(s)	259
Bsh1236I	CGCG	1 cut(s)	194
Bsh1285I	CGRYCG	3 cut(s)	106, 192, 271
BshFI	GGCC	6 cut(s)	59, 105, 191, 254, 336, 344
BshNI	GGYRCC	2 cut(s)	231, 466
BsiEI	CGRYCG	3 cut(s)	106, 192, 271
BsiSI	CCGG	1 cut(s)	267
BslI	CCNNNNNNNGG	1 cut(s)	129
BsmAI	GTCTC	1 cut(s)	178
BsmBI	CGTCTC	1 cut(s)	178
BsnI	GGCC	6 cut(s)	59, 105, 191, 254, 336, 344
Bsp119I	TTCGAA	1 cut(s)	523
Bsp143I	GATC	1 cut(s)	210
Bsp19I	CCATGG	1 cut(s)	281
BspANI	GGCC	6 cut(s)	59, 105, 191, 254, 336, 344
BspCNI	CTCAG	1 cut(s)	524
BspFNI	CGCG	1 cut(s)	194
BspLI	GGNNCC	2 cut(s)	233, 468
BspT104I	TTCGAA	1 cut(s)	523
BspT107I	GGYRCC	2 cut(s)	231, 466
BsrI	ACTGG	2 cut(s)	134, 345
BssECI	CCNNGG	2 cut(s)	100, 281
BssMI	GATC	1 cut(s)	210
BssNI	GRCGYC	2 cut(s)	138, 467
BssT1I	CCWWGG	1 cut(s)	281
Bst4CI	ACNGT	1 cut(s)	231
BstACI	GRCGYC	2 cut(s)	138, 467
BstBI	TTCGAA	1 cut(s)	523
BstC8I	GCNNGC	1 cut(s)	252
BstDEI	CTNAG	1 cut(s)	511
BstDSI	CCRYGG	1 cut(s)	281
BstF5I	GGATG	2 cut(s)	139, 397
BstFNI	CGCG	1 cut(s)	194
BstH2I	RGCGCY	1 cut(s)	470
BstHHI	GCGC	2 cut(s)	196, 469
BstKTI	GATC	1 cut(s)	213
BstMAI	GTCTC	1 cut(s)	178
BstMBI	GATC	1 cut(s)	210
BstMCI	CGRYCG	3 cut(s)	106, 192, 271
BstSCI	CCNGG	1 cut(s)	265
BstUI	CGCG	1 cut(s)	194
BstV1I	GCAGC	1 cut(s)	259
BstV2I	GAAGAC	1 cut(s)	70
BstZI	CGGCCG	2 cut(s)	103, 189
BsuRI	GGCC	6 cut(s)	59, 105, 191, 254, 336, 344
BtgI	CCRYGG	1 cut(s)	281
BtsCI	GGATG	2 cut(s)	139, 397
BtsI	GCAGTG	1 cut(s)	203
BtsIMutI	CAGTG	1 cut(s)	203
Cac8I	GCNNGC	1 cut(s)	252
CfoI	GCGC	2 cut(s)	196, 469
Cfr13I	GGNCC	5 cut(s)	45, 58, 93, 252, 334
Csp6I	GTAC	2 cut(s)	232, 407
CviAII	CATG	1 cut(s)	282
CviQI	GTAC	2 cut(s)	232, 407
DdeI	CTNAG	1 cut(s)	511
DinI	GGCGCC	1 cut(s)	468
DpnI	GATC	1 cut(s)	212
DpnII	GATC	1 cut(s)	210
EaeI	YGGCCR	3 cut(s)	103, 189, 342
EagI	CGGCCG	2 cut(s)	103, 189
EclXI	CGGCCG	2 cut(s)	103, 189
Eco130I	CCWWGG	1 cut(s)	281
Eco47I	GGWCC	2 cut(s)	45, 93
Eco52I	CGGCCG	2 cut(s)	103, 189
EcoRI	GAATTC	1 cut(s)	361
EcoT14I	CCWWGG	1 cut(s)	281
EgeI	GGCGCC	1 cut(s)	468
EheI	GGCGCC	1 cut(s)	468
ErhI	CCWWGG	1 cut(s)	281
Esp3I	CGTCTC	1 cut(s)	178
FaeI	CATG	1 cut(s)	285
FaiI	YATR	3 cut(s)	283, 302, 456
FatI	CATG	1 cut(s)	281
FauI	CCCGC	3 cut(s)	26, 39, 243
Fnu4HI	GCNGC	7 cut(s)	22, 25, 35, 106, 156, 192, 248
FokI	GGATG	2 cut(s)	146, 404
Fsp4HI	GCNGC	7 cut(s)	22, 25, 35, 106, 156, 192, 248
FspBI	CTAG	2 cut(s)	372, 546
GlaI	GCGC	2 cut(s)	195, 468
GluI	GCNGC	7 cut(s)	22, 25, 35, 106, 156, 192, 248
HaeII	RGCGCY	1 cut(s)	470
HaeIII	GGCC	6 cut(s)	59, 105, 191, 254, 336, 344
HapII	CCGG	1 cut(s)	267
HhaI	GCGC	2 cut(s)	196, 469
Hin1I	GRCGYC	2 cut(s)	138, 467
Hin1II	CATG	1 cut(s)	285
Hin6I	GCGC	2 cut(s)	194, 467
HinP1I	GCGC	2 cut(s)	194, 467
HinfI	GANTC	2 cut(s)	320, 542
HpaII	CCGG	1 cut(s)	267
HphI	GGTGA	2 cut(s)	365, 434
Hpy188I	TCNGA	1 cut(s)	241
Hpy188III	TCNNGA	1 cut(s)	214
Hpy99I	CGWCG	3 cut(s)	53, 56, 143
HpyCH4III	ACNGT	1 cut(s)	231
HpyCH4IV	ACGT	1 cut(s)	138
HpyF3I	CTNAG	1 cut(s)	511
HpySE526I	ACGT	1 cut(s)	138
Hsp92I	GRCGYC	2 cut(s)	138, 467
Hsp92II	CATG	1 cut(s)	285
HspAI	GCGC	2 cut(s)	194, 467
KasI	GGCGCC	1 cut(s)	466
KpnI	GGTACC	1 cut(s)	235
Kzo9I	GATC	1 cut(s)	210
LmnI	GCTCC	1 cut(s)	225
LpnPI	CCDG	8 cut(s)	28, 115, 280, 309, 358, 414, 450, 498
Lsp1109I	GCAGC	1 cut(s)	259
LweI	GCATC	1 cut(s)	415
MaeI	CTAG	2 cut(s)	372, 546
MaeII	ACGT	1 cut(s)	138
MalI	GATC	1 cut(s)	212
MboI	GATC	1 cut(s)	210
MboII	GAAGA	4 cut(s)	70, 508, 511, 512
MluCI	AATT	6 cut(s)	161, 308, 361, 395, 460, 527
Mly113I	GGCGCC	1 cut(s)	467
MlyI	GAGTC	1 cut(s)	329
MseI	TTAA	2 cut(s)	477, 555
MspA1I	CMGCKG	2 cut(s)	37, 250
MspI	CCGG	1 cut(s)	267
MspR9I	CCNGG	1 cut(s)	267
MvnI	CGCG	1 cut(s)	194
NarI	GGCGCC	1 cut(s)	467
NciI	CCSGG	1 cut(s)	267
NcoI	CCATGG	1 cut(s)	281
NdeII	GATC	1 cut(s)	210
NlaIII	CATG	1 cut(s)	285
NlaIV	GGNNCC	2 cut(s)	233, 468
NmeAIII	GCCGAG	1 cut(s)	81
NspV	TTCGAA	1 cut(s)	523
PfeI	GAWTC	1 cut(s)	542
PflFI	GACNNNGTC	1 cut(s)	267
PflMI	CCANNNNNTGG	1 cut(s)	129
PkrI	GCNGC	7 cut(s)	23, 26, 36, 107, 157, 193, 249
PleI	GAGTC	1 cut(s)	328
PluTI	GGCGCC	1 cut(s)	470
PpsI	GAGTC	1 cut(s)	328
PspN4I	GGNNCC	2 cut(s)	233, 468
PspPI	GGNCC	5 cut(s)	45, 58, 93, 252, 334
PsyI	GACNNNGTC	1 cut(s)	267
RsaI	GTAC	2 cut(s)	233, 408
RsaNI	GTAC	2 cut(s)	232, 407
SaqAI	TTAA	2 cut(s)	477, 555
SatI	GCNGC	7 cut(s)	22, 25, 35, 106, 156, 192, 248
Sau3AI	GATC	1 cut(s)	210
Sau96I	GGNCC	5 cut(s)	45, 58, 93, 252, 334
SchI	GAGTC	1 cut(s)	329
ScrFI	CCNGG	1 cut(s)	267
SetI	ASST	8 cut(s)	87, 141, 222, 355, 377, 385, 454, 512
SfaNI	GCATC	1 cut(s)	415
SfoI	GGCGCC	1 cut(s)	468
SfuI	TTCGAA	1 cut(s)	523
SinI	GGWCC	2 cut(s)	45, 93
Sse9I	AATT	6 cut(s)	161, 308, 361, 395, 460, 527
SspDI	GGCGCC	1 cut(s)	466
SspMI	CTAG	2 cut(s)	372, 546
StyD4I	CCNGG	1 cut(s)	265
StyI	CCWWGG	1 cut(s)	281
TaaI	ACNGT	1 cut(s)	231
TaiI	ACGT	1 cut(s)	141
TaqI	TCGA	4 cut(s)	213, 257, 365, 523
TaqII	GACCGA	1 cut(s)	62
TasI	AATT	6 cut(s)	161, 308, 361, 395, 460, 527
TauI	GCSGC	6 cut(s)	24, 27, 37, 108, 158, 194
TfiI	GAWTC	1 cut(s)	542
Tru1I	TTAA	2 cut(s)	477, 555
Tru9I	TTAA	2 cut(s)	477, 555
TscAI	CASTG	1 cut(s)	203
TseI	GCWGC	1 cut(s)	247
TspDTI	ATGAA	3 cut(s)	408, 503, 519
TspGWI	ACGGA	2 cut(s)	64, 424
TspRI	CASTG	1 cut(s)	203
Tth111I	GACNNNGTC	1 cut(s)	267
Van91I	CCANNNNNTGG	1 cut(s)	129
VpaK11BI	GGWCC	2 cut(s)	45, 93
XapI	RAATTY	4 cut(s)	361, 395, 460, 527
XspI	CTAG	2 cut(s)	372, 546
ZraI	GACGTC	1 cut(s)	139

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.