Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0009993

Physical Location & Seq

Genomic Coordinates Forward (+)

19367841 .. 19368557

Gene Structure 717 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1209400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGGAGAAAAAGGGTTTGGTGAGCAACAGCTTGAAAGATCATGCTGGTATTGTCACCAGAGCCATTAGGCGCAGCAAGACTACCTATGAAGAAGACGATTACAATTTTGATGGGTTTGCATGGCCTCCAAGATCTTACACGTGTAGCTTCTGCAAAAGGGAATTTAGATCTGCTCAAGCTCTTGGCGGCCACATGAATGTTCACCGAAAAGACCGAGCCAGGCTCAAAGGCTCACCCCCAAGAGACAGTCAATACACGAGTACTATTCTTAACCTTAACCTCAACAAAGTGCCAAACCCTAACCCTAATTTCTCATCAACATCATCAGCATCCTCACCATCCTCACCATCCTCCTGGATATCACCAATTAGTAGCACATTACCCTCTTTGATATCACCACCAGCTCCTCCACCTGTTTTTTTGGTGCCGTCTAGCGAAAATATGAAATGGGTTGTGGGAGACACCCTCTTTAATCACCCTCTAAACTTCAAAGCCTCGGATTTTGGTACTACAGTAAAGAAGAACGCAGAATCTTTTTGTGGAGTAGGAGATCGTCAATGTGATGGTTTCATTGGAGAAGAACATGGGTGCATAAAGACTGTCAAGGCAGCTGATCATCCTCATCATCCGATTGTTAGGTTGGACTTGGAGATCGGTATGCTTGGTGACTCAAATAAGGAAGACTTAGATTTGGAACTTCGATTGGGATACTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0008361 GO:0009653 GO:0009719 GO:0009725 GO:0009755 GO:0009791 GO:0009889 GO:0009908 GO:0009987 GO:0010033 GO:0010093 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032535 GO:0032870 GO:0042127 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048444 GO:0048449 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048859 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071495 GO:0071840 GO:0080090 GO:0090066 GO:0090567 GO:0090691 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

239

Amino Acids

26.24

Weight (kDa)

8.25

Isoelectric Point (pI)

47.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	46 - 70	5.6e-07	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009993)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23130
fragaria_vesca	FvH4_3g12221 FvH4_3g12221 FvH4_3g12221 FvH4_3g12221 FvH4_3g12221 FvH4_4g03010
malus_domestica	MD13G1209400.v1.1 MD16G1212200.v1.1
prunus_persica	Prupe.1G034100_v2.0.a1 Prupe.1G034100_v2.0.a1
pyrus_communis	pycom16g17820
rosa_chinensis	RchiOBHm_Chr4g0391201
rosa_laevigata	RLG00000009878
rosa_multiflora	Rmu_sc0000040.1_g000012
rosa_roxburghii	Rroxscaffold_5G00336990
rosa_rugosa	Rorug03G0335100
rosa_samantha	Rh4BG030800 Rh4CG039100 Rh4DG033500
rosa_wichuraiana	Rw4G002810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	424
AciI	CCGC	1 cut(s)	186
AcoI	YGGCCR	1 cut(s)	187
AcsI	RAATTY	1 cut(s)	161
AcvI	CACGTG	1 cut(s)	141
AfaI	GTAC	2 cut(s)	262, 508
AflIII	ACRYGT	2 cut(s)	138, 140
AgsI	TTSAA	2 cut(s)	34, 490
AjnI	CCWGG	2 cut(s)	218, 353
AjuI	GAANNNNNNNTTGG	1 cut(s)	31
AluBI	AGCT	5 cut(s)	30, 147, 179, 404, 611
AluI	AGCT	5 cut(s)	30, 147, 179, 404, 611
Alw26I	GTCTC	2 cut(s)	237, 453
AoxI	GGCC	2 cut(s)	122, 187
ApeKI	GCWGC	2 cut(s)	72, 608
ApoI	RAATTY	1 cut(s)	161
AspLEI	GCGC	1 cut(s)	72
BaeI	ACNNNNGTAYC	2 cut(s)	498, 531
BanI	GGYRCC	1 cut(s)	424
BauI	CACGAG	1 cut(s)	256
BbrPI	CACGTG	1 cut(s)	141
BbsI	GAAGAC	2 cut(s)	99, 687
BbvI	GCAGC	2 cut(s)	84, 620
BccI	CCATC	4 cut(s)	104, 346, 355, 557
BceAI	ACGGC	1 cut(s)	412
BciT130I	CCWGG	2 cut(s)	220, 355
BciVI	GTATCC	1 cut(s)	701
BclI	TGATCA	1 cut(s)	613
BcoDI	GTCTC	2 cut(s)	237, 453
BfaI	CTAG	1 cut(s)	432
BfmI	CTRYAG	1 cut(s)	510
BfuI	GTATCC	1 cut(s)	701
BglII	AGATCT	2 cut(s)	131, 167
BisI	GCNGC	3 cut(s)	73, 187, 609
BlsI	GCNGC	3 cut(s)	74, 188, 610
BmcAI	AGTACT	1 cut(s)	262
Bme1390I	CCNGG	2 cut(s)	220, 355
BmiI	GGNNCC	1 cut(s)	426
BmrFI	CCNGG	2 cut(s)	220, 355
BmsI	GCATC	1 cut(s)	338
BpiI	GAAGAC	2 cut(s)	99, 687
BplI	GAGNNNNNCTC	4 cut(s)	207, 239, 450, 482
BpuEI	CTTGAG	1 cut(s)	159
BsaAI	YACGTR	1 cut(s)	141
BsaJI	CCNNGG	1 cut(s)	495
BseBI	CCWGG	2 cut(s)	220, 355
BseDI	CCNNGG	1 cut(s)	495
BseGI	GGATG	5 cut(s)	329, 338, 347, 616, 625
BseRI	GAGGAG	1 cut(s)	396
BseXI	GCAGC	2 cut(s)	84, 620
BshFI	GGCC	2 cut(s)	124, 189
BshNI	GGYRCC	1 cut(s)	424
BsmAI	GTCTC	2 cut(s)	237, 453
BsnI	GGCC	2 cut(s)	124, 189
Bsp143I	GATC	6 cut(s)	37, 131, 167, 550, 613, 651
BspACI	CCGC	1 cut(s)	186
BspANI	GGCC	2 cut(s)	124, 189
BspLI	GGNNCC	1 cut(s)	426
BspT107I	GGYRCC	1 cut(s)	424
BssECI	CCNNGG	1 cut(s)	495
BssMI	GATC	6 cut(s)	37, 131, 167, 550, 613, 651
BssSI	CACGAG	1 cut(s)	256
Bst2BI	CACGAG	1 cut(s)	256
Bst2UI	CCWGG	2 cut(s)	220, 355
Bst4CI	ACNGT	3 cut(s)	248, 514, 601
BstBAI	YACGTR	1 cut(s)	141
BstDEI	CTNAG	2 cut(s)	685, 714
BstF5I	GGATG	5 cut(s)	329, 338, 347, 616, 625
BstHHI	GCGC	1 cut(s)	72
BstKTI	GATC	6 cut(s)	40, 134, 170, 553, 616, 654
BstMAI	GTCTC	2 cut(s)	237, 453
BstMBI	GATC	6 cut(s)	37, 131, 167, 550, 613, 651
BstNI	CCWGG	2 cut(s)	220, 355
BstSCI	CCNGG	2 cut(s)	218, 353
BstSFI	CTRYAG	1 cut(s)	510
BstV1I	GCAGC	2 cut(s)	84, 620
BstV2I	GAAGAC	2 cut(s)	99, 687
BstX2I	RGATCY	2 cut(s)	131, 167
BstXI	CCANNNNNNTGG	1 cut(s)	354
BstYI	RGATCY	2 cut(s)	131, 167
BsuI	GTATCC	1 cut(s)	701
BsuRI	GGCC	2 cut(s)	124, 189
BtsCI	GGATG	5 cut(s)	329, 338, 347, 616, 625
CfoI	GCGC	1 cut(s)	72
Csp6I	GTAC	2 cut(s)	261, 507
CviAII	CATG	4 cut(s)	41, 120, 193, 584
CviQI	GTAC	2 cut(s)	261, 507
DdeI	CTNAG	2 cut(s)	685, 714
DpnI	GATC	6 cut(s)	39, 133, 169, 552, 615, 653
DpnII	GATC	6 cut(s)	37, 131, 167, 550, 613, 651
EaeI	YGGCCR	1 cut(s)	187
Eco32I	GATATC	2 cut(s)	360, 393
Eco72I	CACGTG	1 cut(s)	141
EcoRII	CCWGG	2 cut(s)	218, 353
EcoRV	GATATC	2 cut(s)	360, 393
FaeI	CATG	4 cut(s)	44, 123, 196, 587
FaiI	YATR	8 cut(s)	42, 87, 121, 194, 443, 585, 593, 659
FalI	AAGNNNNNCTT	2 cut(s)	668, 700
FatI	CATG	4 cut(s)	40, 119, 192, 583
FbaI	TGATCA	1 cut(s)	613
Fnu4HI	GCNGC	3 cut(s)	73, 187, 609
FokI	GGATG	5 cut(s)	316, 325, 334, 603, 612
Fsp4HI	GCNGC	3 cut(s)	73, 187, 609
FspBI	CTAG	1 cut(s)	432
GlaI	GCGC	1 cut(s)	71
GluI	GCNGC	3 cut(s)	73, 187, 609
HaeIII	GGCC	2 cut(s)	124, 189
HhaI	GCGC	1 cut(s)	72
Hin1II	CATG	4 cut(s)	44, 123, 196, 587
Hin6I	GCGC	1 cut(s)	70
HinP1I	GCGC	1 cut(s)	70
HinfI	GANTC	2 cut(s)	530, 668
Hpy166II	GTNNAC	1 cut(s)	202
Hpy188I	TCNGA	2 cut(s)	499, 630
Hpy8I	GTNNAC	1 cut(s)	202
HpyCH4III	ACNGT	3 cut(s)	248, 514, 601
HpyCH4IV	ACGT	1 cut(s)	140
HpyCH4V	TGCA	3 cut(s)	119, 153, 591
HpyF3I	CTNAG	2 cut(s)	685, 714
HpySE526I	ACGT	1 cut(s)	140
Hsp92II	CATG	4 cut(s)	44, 123, 196, 587
HspAI	GCGC	1 cut(s)	70
Ksp22I	TGATCA	1 cut(s)	613
Kzo9I	GATC	6 cut(s)	37, 131, 167, 550, 613, 651
LmnI	GCTCC	1 cut(s)	409
LpnPI	CCDG	8 cut(s)	30, 70, 205, 232, 340, 367, 414, 426
Lsp1109I	GCAGC	2 cut(s)	84, 620
LweI	GCATC	1 cut(s)	338
MaeI	CTAG	1 cut(s)	432
MaeII	ACGT	1 cut(s)	140
MaeIII	GTNAC	2 cut(s)	52, 665
MalI	GATC	6 cut(s)	39, 133, 169, 552, 615, 653
MboI	GATC	6 cut(s)	37, 131, 167, 550, 613, 651
MboII	GAAGA	5 cut(s)	101, 104, 532, 590, 692
MflI	RGATCY	2 cut(s)	131, 167
MluCI	AATT	4 cut(s)	103, 161, 307, 366
MlyI	GAGTC	1 cut(s)	662
MmeI	TCCRAC	1 cut(s)	621
MseI	TTAA	3 cut(s)	270, 276, 471
MslI	CAYNNNNRTG	1 cut(s)	195
MspA1I	CMGCKG	1 cut(s)	611
MspR9I	CCNGG	2 cut(s)	220, 355
MvaI	CCWGG	2 cut(s)	220, 355
NdeII	GATC	6 cut(s)	37, 131, 167, 550, 613, 651
NlaIII	CATG	4 cut(s)	44, 123, 196, 587
NlaIV	GGNNCC	1 cut(s)	426
NmuCI	GTSAC	2 cut(s)	52, 665
PfeI	GAWTC	1 cut(s)	530
PfoI	TCCNGGA	1 cut(s)	353
PkrI	GCNGC	3 cut(s)	74, 188, 610
PleI	GAGTC	1 cut(s)	662
PmaCI	CACGTG	1 cut(s)	141
PmlI	CACGTG	1 cut(s)	141
PpsI	GAGTC	1 cut(s)	662
Ppu21I	YACGTR	1 cut(s)	141
Psp6I	CCWGG	2 cut(s)	218, 353
PspCI	CACGTG	1 cut(s)	141
PspGI	CCWGG	2 cut(s)	218, 353
PspN4I	GGNNCC	1 cut(s)	426
PsuI	RGATCY	2 cut(s)	131, 167
PvuII	CAGCTG	1 cut(s)	611
RsaI	GTAC	2 cut(s)	262, 508
RsaNI	GTAC	2 cut(s)	261, 507
RseI	CAYNNNNRTG	1 cut(s)	195
SaqAI	TTAA	3 cut(s)	270, 276, 471
SatI	GCNGC	3 cut(s)	73, 187, 609
Sau3AI	GATC	6 cut(s)	37, 131, 167, 550, 613, 651
ScaI	AGTACT	1 cut(s)	262
SchI	GAGTC	1 cut(s)	662
ScrFI	CCNGG	2 cut(s)	220, 355
SfaNI	GCATC	1 cut(s)	338
SfcI	CTRYAG	1 cut(s)	510
SmiMI	CAYNNNNRTG	1 cut(s)	195
SmlI	CTYRAG	1 cut(s)	174
SmoI	CTYRAG	1 cut(s)	174
Sse9I	AATT	4 cut(s)	103, 161, 307, 366
SsiI	CCGC	1 cut(s)	186
SspMI	CTAG	1 cut(s)	432
StyD4I	CCNGG	2 cut(s)	218, 353
TaaI	ACNGT	3 cut(s)	248, 514, 601
TaiI	ACGT	1 cut(s)	143
TaqI	TCGA	1 cut(s)	700
TaqII	GACCGA	1 cut(s)	228
TasI	AATT	4 cut(s)	103, 161, 307, 366
TatI	WGTACW	1 cut(s)	260
TauI	GCSGC	1 cut(s)	189
TfiI	GAWTC	1 cut(s)	530
Tru1I	TTAA	3 cut(s)	270, 276, 471
Tru9I	TTAA	3 cut(s)	270, 276, 471
TseFI	GTSAC	2 cut(s)	52, 665
TseI	GCWGC	2 cut(s)	72, 608
Tsp45I	GTSAC	2 cut(s)	52, 665
TspDTI	ATGAA	4 cut(s)	102, 209, 458, 559
XapI	RAATTY	1 cut(s)	161
XspI	CTAG	1 cut(s)	432
ZrmI	AGTACT	1 cut(s)	262

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.