Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0009993

Physical Location & Seq

Genomic Coordinates Forward (+)

2368925 .. 2370496

Gene Structure 1572 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G034100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGGCCTTTACAGAAGCTTTAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAGACTCAAAGCCCAATACTCCATCATCACCATTTTTCTCAGCTTGGAGAGTCAGAAATTTATTTCTTGACATTTTCTTTCAATACGATCTTGGACTCTTCTCTAGACAATTGATCTACATATATTGGCTGGTCCGAATCTCTTCGTTCCCCTCCTCTGCTCTAGCTAGACTTCTGTGTCTTGATCTTCTTGACCGTGTTAAGCCGGCTGATAAATCAGAGCATACACGTATGGAGAAGAACAGGTTGAGCAACAACTTGAAAGAACATGGTAGAGCCATTAGAGATTCGAACAACAAAAGAATAATCCACTGCAGCCAAAGCTGTGAAGAAGACTACATCAATGGGTTCTCATGGCCTCCAAGGTCTTACACGTGTAGCTTCTGCAAAAGAGAGTTTAGATCTGCTCAGGCTTTGGGGGGCCATATGAATGTTCACAGGAAAGACCGAGCCAGGCTGAAAAACTCACCCCCAATAGATGCTCAGTACACTAGTACCATTTTTAACCTTAACCTTAACCTTAAACCTAACCCTAACCCTAATTTCTTATCAACATCATCACCATCATCATCCTCCTCTTTGGTATCGCCATTTAGTAGCTCATTATCACTACCCTCTTTGATATCACCTCCTCTTCCTCCTCATCCACCACCTATATTTTCGGTACCATCTAGCGAAAATATGAAATGGGTTGTGGGAGGCACCCTTTTTAATCATCCTTTAAACCTCAAAGCTTCGGATTTAAGTAGTAAATTGAAGGGTGCAAAATCTTTGTGTGGGGTTGGACAAGAAGATCAAGATGGGTGCATAAAGACTTTGAAGAAGGCAGCCGATCCCCGTCAAATTCTTAGGTTGGACTTGGAGATTGGTATGTTTGGTGACACAAATAAGGAGGACTTGGATTTGGAACTTCGGTTAGGATACTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0008361 GO:0009653 GO:0009719 GO:0009725 GO:0009755 GO:0009791 GO:0009889 GO:0009908 GO:0009987 GO:0010033 GO:0010093 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032535 GO:0032870 GO:0042127 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048444 GO:0048449 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048859 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071495 GO:0071840 GO:0080090 GO:0090066 GO:0090567 GO:0090691 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

330

Amino Acids

36.8

Weight (kDa)

9.21

Isoelectric Point (pI)

46.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009993)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23130
fragaria_vesca	FvH4_3g12221 FvH4_3g12221 FvH4_3g12221 FvH4_3g12221 FvH4_3g12221 FvH4_4g03010
malus_domestica	MD13G1209400.v1.1 MD16G1212200.v1.1
prunus_persica	Prupe.1G034100_v2.0.a1 Prupe.1G034100_v2.0.a1
pyrus_communis	pycom16g17820
rosa_chinensis	RchiOBHm_Chr4g0391201
rosa_laevigata	RLG00000009878
rosa_multiflora	Rmu_sc0000040.1_g000012
rosa_roxburghii	Rroxscaffold_5G00336990
rosa_rugosa	Rorug03G0335100
rosa_samantha	Rh4BG030800 Rh4CG039100 Rh4DG033500
rosa_wichuraiana	Rw4G002810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	237
Acc65I	GGTACC	1 cut(s)	724
AccB1I	GGYRCC	2 cut(s)	724, 761
AclWI	GGATC	1 cut(s)	887
AcsI	RAATTY	2 cut(s)	118, 903
AcvI	CACGTG	1 cut(s)	435
AfaI	GTAC	3 cut(s)	548, 556, 726
AflIII	ACRYGT	3 cut(s)	287, 432, 434
AgsI	TTSAA	4 cut(s)	143, 322, 817, 880
AhlI	ACTAGT	1 cut(s)	551
AjnI	CCWGG	1 cut(s)	512
AluBI	AGCT	7 cut(s)	17, 104, 227, 384, 441, 660, 794
AluI	AGCT	7 cut(s)	17, 104, 227, 384, 441, 660, 794
AlwI	GGATC	1 cut(s)	887
AoxI	GGCC	3 cut(s)	3, 416, 481
ApeKI	GCWGC	2 cut(s)	375, 887
ApoI	RAATTY	2 cut(s)	118, 903
Asp700I	GAANNNNTTC	1 cut(s)	202
Asp718I	GGTACC	1 cut(s)	724
AspS9I	GGNCC	2 cut(s)	193, 481
AsuHPI	GGTGA	5 cut(s)	81, 519, 612, 678, 950
AsuII	TTCGAA	1 cut(s)	350
AvaII	GGWCC	1 cut(s)	193
BaeI	ACNNNNGTAYC	2 cut(s)	538, 571
BanI	GGYRCC	2 cut(s)	724, 761
BbrPI	CACGTG	1 cut(s)	435
BbsI	GAAGAC	1 cut(s)	399
BbvI	GCAGC	2 cut(s)	387, 899
BccI	CCATC	4 cut(s)	91, 631, 736, 854
BciT130I	CCWGG	1 cut(s)	514
BciVI	GTATCC	1 cut(s)	974
BcuI	ACTAGT	1 cut(s)	551
BfaI	CTAG	6 cut(s)	165, 224, 228, 552, 732, 988
BfmI	CTRYAG	1 cut(s)	373
BfuI	GTATCC	1 cut(s)	974
BglII	AGATCT	1 cut(s)	461
BisI	GCNGC	2 cut(s)	376, 888
BlsI	GCNGC	2 cut(s)	377, 889
Bme1390I	CCNGG	1 cut(s)	514
Bme18I	GGWCC	1 cut(s)	193
BmgT120I	GGNCC	2 cut(s)	193, 481
BmiI	GGNNCC	3 cut(s)	482, 726, 763
BmrFI	CCNGG	1 cut(s)	514
BmsI	GCATC	1 cut(s)	529
BpiI	GAAGAC	1 cut(s)	399
Bpu10I	CCTNAGC	1 cut(s)	468
Bpu14I	TTCGAA	1 cut(s)	350
BsaAI	YACGTR	2 cut(s)	290, 435
BsaJI	CCNNGG	1 cut(s)	422
Bse118I	RCCGGY	1 cut(s)	265
BseBI	CCWGG	1 cut(s)	514
BseDI	CCNNGG	1 cut(s)	422
BseGI	GGATG	3 cut(s)	629, 703, 775
BseMII	CTCAG	4 cut(s)	75, 114, 482, 557
BseRI	GAGGAG	4 cut(s)	205, 625, 681, 690
BseXI	GCAGC	2 cut(s)	387, 899
BshFI	GGCC	3 cut(s)	5, 418, 483
BshNI	GGYRCC	2 cut(s)	724, 761
BsiSI	CCGG	1 cut(s)	266
BsnI	GGCC	3 cut(s)	5, 418, 483
Bsp119I	TTCGAA	1 cut(s)	350
Bsp143I	GATC	6 cut(s)	148, 174, 244, 461, 853, 892
BspANI	GGCC	3 cut(s)	5, 418, 483
BspCNI	CTCAG	4 cut(s)	74, 113, 481, 556
BspLI	GGNNCC	3 cut(s)	482, 726, 763
BspMAI	CTGCAG	1 cut(s)	377
BspPI	GGATC	1 cut(s)	887
BspT104I	TTCGAA	1 cut(s)	350
BspT107I	GGYRCC	2 cut(s)	724, 761
BsrFI	RCCGGY	1 cut(s)	265
BssAI	RCCGGY	1 cut(s)	265
BssECI	CCNNGG	1 cut(s)	422
BssMI	GATC	6 cut(s)	148, 174, 244, 461, 853, 892
BssT1I	CCWWGG	1 cut(s)	422
Bst2UI	CCWGG	1 cut(s)	514
Bst4CI	ACNGT	1 cut(s)	257
Bst6I	CTCTTC	3 cut(s)	164, 208, 699
BstBAI	YACGTR	2 cut(s)	290, 435
BstBI	TTCGAA	1 cut(s)	350
BstC8I	GCNNGC	1 cut(s)	267
BstDEI	CTNAG	5 cut(s)	61, 100, 468, 543, 908
BstF5I	GGATG	3 cut(s)	629, 703, 775
BstKTI	GATC	6 cut(s)	151, 177, 247, 464, 856, 895
BstMBI	GATC	6 cut(s)	148, 174, 244, 461, 853, 892
BstMWI	GCNNNNNNNGC	1 cut(s)	381
BstNI	CCWGG	1 cut(s)	514
BstSCI	CCNGG	1 cut(s)	512
BstSFI	CTRYAG	1 cut(s)	373
BstV1I	GCAGC	2 cut(s)	387, 899
BstV2I	GAAGAC	1 cut(s)	399
BstX2I	RGATCY	1 cut(s)	461
BstYI	RGATCY	1 cut(s)	461
BsuI	GTATCC	1 cut(s)	974
BsuRI	GGCC	3 cut(s)	5, 418, 483
BtsCI	GGATG	3 cut(s)	629, 703, 775
BtsI	GCAGTG	1 cut(s)	370
BtsIMutI	CAGTG	1 cut(s)	370
Cac8I	GCNNGC	1 cut(s)	267
Cfr10I	RCCGGY	1 cut(s)	265
Cfr13I	GGNCC	2 cut(s)	193, 481
Csp6I	GTAC	3 cut(s)	547, 555, 725
CviAII	CATG	2 cut(s)	329, 414
CviQI	GTAC	3 cut(s)	547, 555, 725
DdeI	CTNAG	5 cut(s)	61, 100, 468, 543, 908
DpnI	GATC	6 cut(s)	150, 176, 246, 463, 855, 894
DpnII	GATC	6 cut(s)	148, 174, 244, 461, 853, 892
DraI	TTTAAA	1 cut(s)	783
DrdI	GACNNNNNNGTC	1 cut(s)	237
DseDI	GACNNNNNNGTC	1 cut(s)	237
Eam1104I	CTCTTC	3 cut(s)	164, 208, 699
EarI	CTCTTC	3 cut(s)	164, 208, 699
Eco130I	CCWWGG	1 cut(s)	422
Eco32I	GATATC	1 cut(s)	684
Eco47I	GGWCC	1 cut(s)	193
Eco72I	CACGTG	1 cut(s)	435
EcoRII	CCWGG	1 cut(s)	512
EcoRV	GATATC	1 cut(s)	684
EcoT14I	CCWWGG	1 cut(s)	422
ErhI	CCWWGG	1 cut(s)	422
FaeI	CATG	2 cut(s)	332, 417
FalI	AAGNNNNNCTT	2 cut(s)	941, 973
FatI	CATG	2 cut(s)	328, 413
FauNDI	CATATG	1 cut(s)	486
Fnu4HI	GCNGC	2 cut(s)	376, 888
FokI	GGATG	3 cut(s)	616, 690, 762
Fsp4HI	GCNGC	2 cut(s)	376, 888
FspBI	CTAG	6 cut(s)	165, 224, 228, 552, 732, 988
GluI	GCNGC	2 cut(s)	376, 888
HaeIII	GGCC	3 cut(s)	5, 418, 483
HapII	CCGG	1 cut(s)	266
Hin1II	CATG	2 cut(s)	332, 417
HindIII	AAGCTT	2 cut(s)	15, 792
HinfI	GANTC	5 cut(s)	65, 111, 156, 198, 347
HpaII	CCGG	1 cut(s)	266
HphI	GGTGA	5 cut(s)	81, 519, 612, 678, 950
Hpy166II	GTNNAC	2 cut(s)	496, 549
Hpy188I	TCNGA	5 cut(s)	64, 116, 197, 280, 799
Hpy188III	TCNNGA	5 cut(s)	128, 165, 242, 251, 857
Hpy8I	GTNNAC	2 cut(s)	496, 549
HpyAV	CCTTC	2 cut(s)	811, 877
HpyCH4III	ACNGT	1 cut(s)	257
HpyCH4IV	ACGT	2 cut(s)	289, 434
HpyCH4V	TGCA	4 cut(s)	375, 447, 824, 867
HpyF10VI	GCNNNNNNNGC	1 cut(s)	381
HpyF3I	CTNAG	5 cut(s)	61, 100, 468, 543, 908
HpySE526I	ACGT	2 cut(s)	289, 434
Hsp92II	CATG	2 cut(s)	332, 417
KpnI	GGTACC	1 cut(s)	728
KroI	GCCGGC	1 cut(s)	265
KroNI	GCCGGC	1 cut(s)	267
Kzo9I	GATC	6 cut(s)	148, 174, 244, 461, 853, 892
LpnPI	CCDG	7 cut(s)	176, 279, 289, 455, 484, 499, 526
Lsp1109I	GCAGC	2 cut(s)	387, 899
LweI	GCATC	1 cut(s)	529
MaeI	CTAG	6 cut(s)	165, 224, 228, 552, 732, 988
MaeII	ACGT	2 cut(s)	289, 434
MaeIII	GTNAC	1 cut(s)	938
MalI	GATC	6 cut(s)	150, 176, 246, 463, 855, 894
MboI	GATC	6 cut(s)	148, 174, 244, 461, 853, 892
MboII	GAAGA	9 cut(s)	151, 195, 239, 310, 401, 404, 686, 863, 892
MfeI	CAATTG	1 cut(s)	170
MflI	RGATCY	1 cut(s)	461
MluCI	AATT	5 cut(s)	118, 170, 601, 812, 903
MlyI	GAGTC	3 cut(s)	59, 120, 150
MmeI	TCCRAC	2 cut(s)	823, 894
MroNI	GCCGGC	1 cut(s)	265
MroXI	GAANNNNTTC	1 cut(s)	202
MseI	TTAA	9 cut(s)	20, 261, 564, 570, 576, 582, 771, 782, 803
MslI	CAYNNNNRTG	1 cut(s)	489
MspI	CCGG	1 cut(s)	266
MspR9I	CCNGG	1 cut(s)	514
MunI	CAATTG	1 cut(s)	170
MvaI	CCWGG	1 cut(s)	514
MwoI	GCNNNNNNNGC	1 cut(s)	381
NaeI	GCCGGC	1 cut(s)	267
NdeI	CATATG	1 cut(s)	486
NdeII	GATC	6 cut(s)	148, 174, 244, 461, 853, 892
NgoMIV	GCCGGC	1 cut(s)	265
NlaIII	CATG	2 cut(s)	332, 417
NlaIV	GGNNCC	3 cut(s)	482, 726, 763
NmuCI	GTSAC	1 cut(s)	938
NspV	TTCGAA	1 cut(s)	350
PdiI	GCCGGC	1 cut(s)	267
PdmI	GAANNNNTTC	1 cut(s)	202
PfeI	GAWTC	2 cut(s)	198, 347
PkrI	GCNGC	2 cut(s)	377, 889
PleI	GAGTC	3 cut(s)	59, 119, 150
PmaCI	CACGTG	1 cut(s)	435
PmlI	CACGTG	1 cut(s)	435
PpsI	GAGTC	3 cut(s)	59, 119, 150
Ppu21I	YACGTR	2 cut(s)	290, 435
Psp6I	CCWGG	1 cut(s)	512
PspCI	CACGTG	1 cut(s)	435
PspGI	CCWGG	1 cut(s)	512
PspN4I	GGNNCC	3 cut(s)	482, 726, 763
PspPI	GGNCC	2 cut(s)	193, 481
PstI	CTGCAG	1 cut(s)	377
PsuI	RGATCY	1 cut(s)	461
RsaI	GTAC	3 cut(s)	548, 556, 726
RsaNI	GTAC	3 cut(s)	547, 555, 725
RseI	CAYNNNNRTG	1 cut(s)	489
SaqAI	TTAA	9 cut(s)	20, 261, 564, 570, 576, 582, 771, 782, 803
SatI	GCNGC	2 cut(s)	376, 888
Sau3AI	GATC	6 cut(s)	148, 174, 244, 461, 853, 892
Sau96I	GGNCC	2 cut(s)	193, 481
SchI	GAGTC	3 cut(s)	59, 120, 150
ScrFI	CCNGG	1 cut(s)	514
SfaNI	GCATC	1 cut(s)	529
SfcI	CTRYAG	1 cut(s)	373
SfuI	TTCGAA	1 cut(s)	350
SinI	GGWCC	1 cut(s)	193
SmiMI	CAYNNNNRTG	1 cut(s)	489
SpeI	ACTAGT	1 cut(s)	551
Sse9I	AATT	5 cut(s)	118, 170, 601, 812, 903
SspMI	CTAG	6 cut(s)	165, 224, 228, 552, 732, 988
StyD4I	CCNGG	1 cut(s)	512
StyI	CCWWGG	1 cut(s)	422
TaaI	ACNGT	1 cut(s)	257
TaiI	ACGT	2 cut(s)	292, 437
TaqI	TCGA	1 cut(s)	350
TaqII	GACCGA	1 cut(s)	522
TasI	AATT	5 cut(s)	118, 170, 601, 812, 903
TatI	WGTACW	1 cut(s)	546
TfiI	GAWTC	2 cut(s)	198, 347
Tru1I	TTAA	9 cut(s)	20, 261, 564, 570, 576, 582, 771, 782, 803
Tru9I	TTAA	9 cut(s)	20, 261, 564, 570, 576, 582, 771, 782, 803
TscAI	CASTG	1 cut(s)	377
TseFI	GTSAC	1 cut(s)	938
TseI	GCWGC	2 cut(s)	375, 887
Tsp45I	GTSAC	1 cut(s)	938
TspDTI	ATGAA	2 cut(s)	503, 758
TspRI	CASTG	1 cut(s)	377
VpaK11BI	GGWCC	1 cut(s)	193
XapI	RAATTY	2 cut(s)	118, 903
XbaI	TCTAGA	1 cut(s)	164
XmnI	GAANNNNTTC	1 cut(s)	202
XspI	CTAG	6 cut(s)	165, 224, 228, 552, 732, 988

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.