Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0009993

Physical Location & Seq

Genomic Coordinates Forward (+)

2653254 .. 2654501

Gene Structure 1248 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g03010.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGCAGAGGAACAGTGGCTCATGCAAAAGCTTAGTCATGACTAAGGCCATTGATGGAGATTCCAACACCAACATTAAGAAGAACACTGAAGATGATGAAGTCTGTATGAATGTGTACCCATGGCCTCCGAGGTGTTACATTTGTGGCTTCTGCAAGAGAGAATTCAAATCTGCTCAAGCTCTGGGTGGCCATATGAATGTTCACAGGAAAGACCGTGCCAAGCTCAGAAGCTCACCCCCAGCTGATTGGATTGGTCAGTACACTCACAGTACTATACTTAATCTCAACCTTAAACCTAACCCTAACCCTACTTTCGTACCCTCACCACCACCATCACCACCATCTCCCTTTTCTACTGCTTCAACTAGGCAGCAGCTCTCACCATTAACTACTAGCTTTAGCTCAGTACCTTCTTGGATATCTCAATCCTCTCATCCTCCTCCCACATTTTCATCGCCATCTGCTACTTGCCATACTGAAAACATGAAATGGCTTGTGGGTGGTAACCTTTCCGGTCCTTCTTTAAATCTCAAGAGTTTCGATTTAAGCAGTCAGATGAAGATTAATGCAGAGTCTCAAGAAGATGGGTGCATGAGGTTGGACTTGGAGATCGGTGTTCTTGGCGGTAACTCAGAGGATGAAATCGATTTGGAGCTTCGATTAGGCTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0008361 GO:0009653 GO:0009719 GO:0009725 GO:0009755 GO:0009791 GO:0009889 GO:0009908 GO:0009987 GO:0010033 GO:0010093 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032535 GO:0032870 GO:0042127 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048444 GO:0048449 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048859 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071495 GO:0071840 GO:0080090 GO:0090066 GO:0090567 GO:0090691 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

224

Amino Acids

24.49

Weight (kDa)

6.94

Isoelectric Point (pI)

65.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009993)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23130
fragaria_vesca	FvH4_3g12221 FvH4_3g12221 FvH4_3g12221 FvH4_3g12221 FvH4_3g12221 FvH4_4g03010
malus_domestica	MD13G1209400.v1.1 MD16G1212200.v1.1
prunus_persica	Prupe.1G034100_v2.0.a1 Prupe.1G034100_v2.0.a1
pyrus_communis	pycom16g17820
rosa_chinensis	RchiOBHm_Chr4g0391201
rosa_laevigata	RLG00000009878
rosa_multiflora	Rmu_sc0000040.1_g000012
rosa_roxburghii	Rroxscaffold_5G00336990
rosa_rugosa	Rorug03G0335100
rosa_samantha	Rh4BG030800 Rh4CG039100 Rh4DG033500
rosa_wichuraiana	Rw4G002810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	624
AcoI	YGGCCR	1 cut(s)	187
AcsI	RAATTY	1 cut(s)	161
AcuI	CTGAAG	1 cut(s)	108
AfaI	GTAC	5 cut(s)	116, 260, 271, 318, 408
AgsI	TTSAA	2 cut(s)	166, 363
AluBI	AGCT	9 cut(s)	30, 179, 223, 231, 242, 376, 396, 402, 655
AluI	AGCT	9 cut(s)	30, 179, 223, 231, 242, 376, 396, 402, 655
Alw26I	GTCTC	1 cut(s)	579
AoxI	GGCC	3 cut(s)	45, 122, 187
ApeKI	GCWGC	2 cut(s)	370, 373
ApoI	RAATTY	1 cut(s)	161
ArsI	GACNNNNNNTTYG	2 cut(s)	18, 50
AseI	ATTAAT	1 cut(s)	564
AspS9I	GGNCC	1 cut(s)	515
AsuHPI	GGTGA	4 cut(s)	225, 315, 327, 372
AvaII	GGWCC	1 cut(s)	515
BaeI	ACNNNNGTAYC	2 cut(s)	300, 333
BalI	TGGCCA	1 cut(s)	189
BbvI	GCAGC	2 cut(s)	382, 385
BccI	CCATC	5 cut(s)	47, 340, 349, 466, 578
BcoDI	GTCTC	1 cut(s)	579
BfaI	CTAG	2 cut(s)	366, 393
BisI	GCNGC	2 cut(s)	371, 374
BlsI	GCNGC	2 cut(s)	372, 375
BmcAI	AGTACT	1 cut(s)	271
Bme18I	GGWCC	1 cut(s)	515
BmgT120I	GGNCC	1 cut(s)	515
BpuEI	CTTGAG	3 cut(s)	159, 515, 561
Bsa29I	ATCGAT	1 cut(s)	645
BsaJI	CCNNGG	2 cut(s)	119, 128
BsaWI	WCCGGW	1 cut(s)	512
BseCI	ATCGAT	1 cut(s)	645
BseDI	CCNNGG	2 cut(s)	119, 128
BseGI	GGATG	2 cut(s)	433, 643
BseMII	CTCAG	3 cut(s)	238, 417, 645
BseRI	GAGGAG	1 cut(s)	429
BseXI	GCAGC	2 cut(s)	382, 385
BseYI	CCCAGC	1 cut(s)	238
BshFI	GGCC	3 cut(s)	47, 124, 189
BshVI	ATCGAT	1 cut(s)	645
BsiSI	CCGG	1 cut(s)	513
BsmAI	GTCTC	1 cut(s)	579
BsnI	GGCC	3 cut(s)	47, 124, 189
Bsp143I	GATC	1 cut(s)	609
Bsp19I	CCATGG	1 cut(s)	119
BspACI	CCGC	1 cut(s)	624
BspANI	GGCC	3 cut(s)	47, 124, 189
BspCNI	CTCAG	3 cut(s)	237, 416, 644
BspDI	ATCGAT	1 cut(s)	645
BspHI	TCATGA	1 cut(s)	36
BssECI	CCNNGG	2 cut(s)	119, 128
BssMI	GATC	1 cut(s)	609
BssT1I	CCWWGG	1 cut(s)	119
Bst4CI	ACNGT	3 cut(s)	14, 215, 269
BstDEI	CTNAG	5 cut(s)	31, 42, 224, 403, 631
BstDSI	CCRYGG	1 cut(s)	119
BstEII	GGTNACC	1 cut(s)	503
BstF5I	GGATG	2 cut(s)	433, 643
BstKTI	GATC	1 cut(s)	612
BstMAI	GTCTC	1 cut(s)	579
BstMBI	GATC	1 cut(s)	609
BstPI	GGTNACC	1 cut(s)	503
BstV1I	GCAGC	2 cut(s)	382, 385
BstXI	CCANNNNNNTGG	1 cut(s)	246
Bsu15I	ATCGAT	1 cut(s)	645
BsuRI	GGCC	3 cut(s)	47, 124, 189
BsuTUI	ATCGAT	1 cut(s)	645
BtgI	CCRYGG	1 cut(s)	119
BtgZI	GCGATG	1 cut(s)	438
BtsCI	GGATG	2 cut(s)	433, 643
BtsIMutI	CAGTG	2 cut(s)	19, 84
CciI	TCATGA	1 cut(s)	36
Cfr13I	GGNCC	1 cut(s)	515
ClaI	ATCGAT	1 cut(s)	645
Csp6I	GTAC	5 cut(s)	115, 259, 270, 317, 407
CviAII	CATG	5 cut(s)	21, 37, 120, 484, 592
CviQI	GTAC	5 cut(s)	115, 259, 270, 317, 407
DdeI	CTNAG	5 cut(s)	31, 42, 224, 403, 631
DpnI	GATC	1 cut(s)	611
DpnII	GATC	1 cut(s)	609
DraI	TTTAAA	1 cut(s)	525
EaeI	YGGCCR	1 cut(s)	187
Eco130I	CCWWGG	1 cut(s)	119
Eco32I	GATATC	1 cut(s)	420
Eco47I	GGWCC	1 cut(s)	515
Eco57I	CTGAAG	1 cut(s)	108
Eco91I	GGTNACC	1 cut(s)	503
EcoO65I	GGTNACC	1 cut(s)	503
EcoRI	GAATTC	1 cut(s)	161
EcoRV	GATATC	1 cut(s)	420
EcoT14I	CCWWGG	1 cut(s)	119
ErhI	CCWWGG	1 cut(s)	119
FaeI	CATG	5 cut(s)	24, 40, 123, 487, 595
FatI	CATG	5 cut(s)	20, 36, 119, 483, 591
FauNDI	CATATG	1 cut(s)	192
Fnu4HI	GCNGC	2 cut(s)	371, 374
FokI	GGATG	2 cut(s)	420, 650
Fsp4HI	GCNGC	2 cut(s)	371, 374
FspBI	CTAG	2 cut(s)	366, 393
GluI	GCNGC	2 cut(s)	371, 374
GsaI	CCCAGC	1 cut(s)	242
HaeIII	GGCC	3 cut(s)	47, 124, 189
HapII	CCGG	1 cut(s)	513
Hin1II	CATG	5 cut(s)	24, 40, 123, 487, 595
HindIII	AAGCTT	1 cut(s)	28
HinfI	GANTC	2 cut(s)	59, 572
HpaII	CCGG	1 cut(s)	513
HphI	GGTGA	4 cut(s)	225, 315, 327, 372
Hpy166II	GTNNAC	3 cut(s)	115, 202, 261
Hpy188I	TCNGA	4 cut(s)	129, 227, 555, 634
Hpy188III	TCNNGA	3 cut(s)	37, 532, 578
Hpy8I	GTNNAC	3 cut(s)	115, 202, 261
HpyAV	CCTTC	2 cut(s)	420, 528
HpyCH4III	ACNGT	3 cut(s)	14, 215, 269
HpyCH4V	TGCA	5 cut(s)	4, 24, 153, 569, 591
HpyF3I	CTNAG	5 cut(s)	31, 42, 224, 403, 631
Hsp92II	CATG	5 cut(s)	24, 40, 123, 487, 595
Kzo9I	GATC	1 cut(s)	609
LmnI	GCTCC	1 cut(s)	652
LpnPI	CCDG	4 cut(s)	167, 190, 252, 526
Lsp1109I	GCAGC	2 cut(s)	382, 385
MaeI	CTAG	2 cut(s)	366, 393
MaeIII	GTNAC	3 cut(s)	134, 503, 626
MalI	GATC	1 cut(s)	611
MboI	GATC	1 cut(s)	609
MboII	GAAGA	4 cut(s)	91, 101, 571, 593
MlsI	TGGCCA	1 cut(s)	189
MluCI	AATT	1 cut(s)	161
MluNI	TGGCCA	1 cut(s)	189
MlyI	GAGTC	1 cut(s)	581
MmeI	TCCRAC	2 cut(s)	87, 579
MnlI	CCTC	8 cut(s)	123, 135, 331, 439, 447, 450, 588, 628
Mox20I	TGGCCA	1 cut(s)	189
MscI	TGGCCA	1 cut(s)	189
MseI	TTAA	7 cut(s)	75, 279, 291, 386, 524, 545, 564
MslI	CAYNNNNRTG	1 cut(s)	195
Msp20I	TGGCCA	1 cut(s)	189
MspA1I	CMGCKG	1 cut(s)	242
MspI	CCGG	1 cut(s)	513
NcoI	CCATGG	1 cut(s)	119
NdeI	CATATG	1 cut(s)	192
NdeII	GATC	1 cut(s)	609
NlaIII	CATG	5 cut(s)	24, 40, 123, 487, 595
PagI	TCATGA	1 cut(s)	36
PfeI	GAWTC	1 cut(s)	59
PkrI	GCNGC	2 cut(s)	372, 375
PleI	GAGTC	1 cut(s)	580
PpsI	GAGTC	1 cut(s)	580
PshBI	ATTAAT	1 cut(s)	564
PspEI	GGTNACC	1 cut(s)	503
PspFI	CCCAGC	1 cut(s)	238
PspPI	GGNCC	1 cut(s)	515
PvuII	CAGCTG	1 cut(s)	242
RsaI	GTAC	5 cut(s)	116, 260, 271, 318, 408
RsaNI	GTAC	5 cut(s)	115, 259, 270, 317, 407
RseI	CAYNNNNRTG	1 cut(s)	195
SaqAI	TTAA	7 cut(s)	75, 279, 291, 386, 524, 545, 564
SatI	GCNGC	2 cut(s)	371, 374
Sau3AI	GATC	1 cut(s)	609
Sau96I	GGNCC	1 cut(s)	515
ScaI	AGTACT	1 cut(s)	271
SchI	GAGTC	1 cut(s)	581
SinI	GGWCC	1 cut(s)	515
SmiMI	CAYNNNNRTG	1 cut(s)	195
SmlI	CTYRAG	3 cut(s)	174, 530, 576
SmoI	CTYRAG	3 cut(s)	174, 530, 576
Sse9I	AATT	1 cut(s)	161
SsiI	CCGC	1 cut(s)	624
SspMI	CTAG	2 cut(s)	366, 393
StyI	CCWWGG	1 cut(s)	119
TaaI	ACNGT	3 cut(s)	14, 215, 269
TaqI	TCGA	3 cut(s)	540, 645, 658
TasI	AATT	1 cut(s)	161
TatI	WGTACW	2 cut(s)	258, 269
TfiI	GAWTC	1 cut(s)	59
Tru1I	TTAA	7 cut(s)	75, 279, 291, 386, 524, 545, 564
Tru9I	TTAA	7 cut(s)	75, 279, 291, 386, 524, 545, 564
TscAI	CASTG	2 cut(s)	19, 91
TseI	GCWGC	2 cut(s)	370, 373
TspDTI	ATGAA	7 cut(s)	111, 122, 209, 441, 500, 572, 654
TspRI	CASTG	2 cut(s)	19, 91
VpaK11BI	GGWCC	1 cut(s)	515
VspI	ATTAAT	1 cut(s)	564
XapI	RAATTY	1 cut(s)	161
XspI	CTAG	2 cut(s)	366, 393
ZrmI	AGTACT	1 cut(s)	271

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.