Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0009993

Physical Location & Seq

Genomic Coordinates Forward (+)

7234799 .. 7236050

Gene Structure 1252 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g12221.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGAACACTGCTGGCTTCTGCAAAAGCTTAGTGAAAGATCCATTACACAGTACAGTCATGACTGAAGATGTTGAAGTCTATATGAATGGGCACCCATGGCCTCCAAGGTGTTACATTTGTGACTTCTGCAAGAGAGAATTCAAATGTGCTCAATCTCTGGGTGGCCATATGAATGTTCACAGGAAAGAACGTGCCATTCTCAGAATTGGTCAGTACACTCACAGTACTATACTTAATCTCAACCTTAATCCTAACCCTACTTTCGTATCCTCACTACCACCATCATTATCATCTCCCTTTTCTACTGTTTCAGCTAGGCAGCTCTCACCATTAACTACTAGCTTTATAAGCTCAGTGCCTTCTTGGATATCACAATCCTCTCATCTTCCTCCTCCTACATTTTCATCGCCATCTGCTACTTGCCATACTCTACGTGCTAACCTTTCGGGTCCTTCTTCAAACTTCATGAAGTTTAATGACGCAAAGTCTCAAGAAGAAGATGAGTGCATGTGGTTGGAGACTGGTGTTCTTGGCGGTAACTCAAAGGATGACATCGATTTAGAGCTTCGATTAGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0008361 GO:0009653 GO:0009719 GO:0009725 GO:0009755 GO:0009791 GO:0009889 GO:0009908 GO:0009987 GO:0010033 GO:0010093 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032535 GO:0032870 GO:0042127 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048444 GO:0048449 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048859 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071495 GO:0071840 GO:0080090 GO:0090066 GO:0090567 GO:0090691 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

193

Amino Acids

21.23

Weight (kDa)

6.64

Isoelectric Point (pI)

60.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009993)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23130
fragaria_vesca	FvH4_3g12221 FvH4_3g12221 FvH4_3g12221 FvH4_3g12221 FvH4_3g12221 FvH4_4g03010
malus_domestica	MD13G1209400.v1.1 MD16G1212200.v1.1
prunus_persica	Prupe.1G034100_v2.0.a1 Prupe.1G034100_v2.0.a1
pyrus_communis	pycom16g17820
rosa_chinensis	RchiOBHm_Chr4g0391201
rosa_laevigata	RLG00000009878
rosa_multiflora	Rmu_sc0000040.1_g000012
rosa_roxburghii	Rroxscaffold_5G00336990
rosa_rugosa	Rorug03G0335100
rosa_samantha	Rh4BG030800 Rh4CG039100 Rh4DG033500
rosa_wichuraiana	Rw4G002810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	347
AccB1I	GGYRCC	1 cut(s)	90
AciI	CCGC	1 cut(s)	534
AclWI	GGATC	1 cut(s)	32
AcoI	YGGCCR	1 cut(s)	163
AcsI	RAATTY	1 cut(s)	137
AcuI	CTGAAG	1 cut(s)	84
AfaI	GTAC	3 cut(s)	52, 215, 226
AgsI	TTSAA	3 cut(s)	74, 142, 459
AhdI	GACNNNNNGTC	1 cut(s)	484
AluBI	AGCT	6 cut(s)	27, 314, 322, 342, 351, 565
AluI	AGCT	6 cut(s)	27, 314, 322, 342, 351, 565
Alw21I	GWGCWC	1 cut(s)	151
Alw26I	GTCTC	2 cut(s)	492, 512
AlwI	GGATC	1 cut(s)	32
AoxI	GGCC	2 cut(s)	98, 163
ApeKI	GCWGC	1 cut(s)	319
ApoI	RAATTY	1 cut(s)	137
AspS9I	GGNCC	1 cut(s)	449
AsuHPI	GGTGA	1 cut(s)	318
AvaII	GGWCC	1 cut(s)	449
BaeGI	GKGCMC	1 cut(s)	93
BaeI	ACNNNNGTAYC	2 cut(s)	249, 282
BalI	TGGCCA	1 cut(s)	165
BanI	GGYRCC	1 cut(s)	90
Bbv12I	GWGCWC	1 cut(s)	151
BbvI	GCAGC	1 cut(s)	331
BccI	CCATC	2 cut(s)	289, 418
BciVI	GTATCC	1 cut(s)	277
BcoDI	GTCTC	2 cut(s)	492, 512
BfaI	CTAG	2 cut(s)	315, 339
BfuI	GTATCC	1 cut(s)	277
BisI	GCNGC	1 cut(s)	320
BlsI	GCNGC	1 cut(s)	321
BmcAI	AGTACT	1 cut(s)	226
Bme18I	GGWCC	1 cut(s)	449
BmeRI	GACNNNNNGTC	1 cut(s)	484
BmgT120I	GGNCC	1 cut(s)	449
BmiI	GGNNCC	2 cut(s)	92, 450
BpuEI	CTTGAG	1 cut(s)	474
Bsa29I	ATCGAT	1 cut(s)	555
BsaAI	YACGTR	1 cut(s)	434
BsaJI	CCNNGG	2 cut(s)	95, 104
Bse1I	ACTGG	1 cut(s)	526
BseCI	ATCGAT	1 cut(s)	555
BseDI	CCNNGG	2 cut(s)	95, 104
BseGI	GGATG	1 cut(s)	553
BseMII	CTCAG	2 cut(s)	214, 366
BseNI	ACTGG	1 cut(s)	526
BseRI	GAGGAG	1 cut(s)	381
BseSI	GKGCMC	1 cut(s)	93
BseXI	GCAGC	1 cut(s)	331
BshFI	GGCC	2 cut(s)	100, 165
BshNI	GGYRCC	1 cut(s)	90
BshVI	ATCGAT	1 cut(s)	555
BsiHKAI	GWGCWC	1 cut(s)	151
BsmAI	GTCTC	2 cut(s)	492, 512
BsnI	GGCC	2 cut(s)	100, 165
Bsp1286I	GDGCHC	2 cut(s)	93, 151
Bsp143I	GATC	1 cut(s)	37
Bsp19I	CCATGG	1 cut(s)	95
BspACI	CCGC	1 cut(s)	534
BspANI	GGCC	2 cut(s)	100, 165
BspCNI	CTCAG	2 cut(s)	213, 365
BspDI	ATCGAT	1 cut(s)	555
BspHI	TCATGA	2 cut(s)	57, 465
BspLI	GGNNCC	2 cut(s)	92, 450
BspPI	GGATC	1 cut(s)	32
BspT107I	GGYRCC	1 cut(s)	90
BsrI	ACTGG	1 cut(s)	526
BssECI	CCNNGG	2 cut(s)	95, 104
BssMI	GATC	1 cut(s)	37
BssT1I	CCWWGG	2 cut(s)	95, 104
Bst4CI	ACNGT	4 cut(s)	50, 55, 224, 307
BstBAI	YACGTR	1 cut(s)	434
BstC8I	GCNNGC	1 cut(s)	13
BstDEI	CTNAG	3 cut(s)	28, 200, 352
BstDSI	CCRYGG	1 cut(s)	95
BstF5I	GGATG	1 cut(s)	553
BstKTI	GATC	1 cut(s)	40
BstMAI	GTCTC	2 cut(s)	492, 512
BstMBI	GATC	1 cut(s)	37
BstMWI	GCNNNNNNNGC	2 cut(s)	97, 348
BstNSI	RCATGY	1 cut(s)	511
BstSLI	GKGCMC	1 cut(s)	93
BstV1I	GCAGC	1 cut(s)	331
BstX2I	RGATCY	1 cut(s)	37
BstYI	RGATCY	1 cut(s)	37
Bsu15I	ATCGAT	1 cut(s)	555
BsuI	GTATCC	1 cut(s)	277
BsuRI	GGCC	2 cut(s)	100, 165
BsuTUI	ATCGAT	1 cut(s)	555
BtgI	CCRYGG	1 cut(s)	95
BtgZI	GCGATG	1 cut(s)	390
BtsCI	GGATG	1 cut(s)	553
BtsI	GCAGTG	1 cut(s)	6
BtsIMutI	CAGTG	2 cut(s)	6, 360
Cac8I	GCNNGC	1 cut(s)	13
CciI	TCATGA	2 cut(s)	57, 465
Cfr13I	GGNCC	1 cut(s)	449
ClaI	ATCGAT	1 cut(s)	555
CseI	GACGC	1 cut(s)	488
Csp6I	GTAC	3 cut(s)	51, 214, 225
CviAII	CATG	4 cut(s)	58, 96, 466, 508
CviQI	GTAC	3 cut(s)	51, 214, 225
DdeI	CTNAG	3 cut(s)	28, 200, 352
DpnI	GATC	1 cut(s)	39
DpnII	GATC	1 cut(s)	37
DriI	GACNNNNNGTC	1 cut(s)	484
EaeI	YGGCCR	1 cut(s)	163
Eam1105I	GACNNNNNGTC	1 cut(s)	484
Eco130I	CCWWGG	2 cut(s)	95, 104
Eco32I	GATATC	1 cut(s)	369
Eco47I	GGWCC	1 cut(s)	449
Eco57I	CTGAAG	1 cut(s)	84
EcoO109I	RGGNCCY	1 cut(s)	449
EcoRI	GAATTC	1 cut(s)	137
EcoRV	GATATC	1 cut(s)	369
EcoT14I	CCWWGG	2 cut(s)	95, 104
ErhI	CCWWGG	2 cut(s)	95, 104
FaeI	CATG	4 cut(s)	61, 99, 469, 511
FatI	CATG	4 cut(s)	57, 95, 465, 507
FauNDI	CATATG	1 cut(s)	168
Fnu4HI	GCNGC	1 cut(s)	320
FokI	GGATG	1 cut(s)	560
Fsp4HI	GCNGC	1 cut(s)	320
FspBI	CTAG	2 cut(s)	315, 339
GluI	GCNGC	1 cut(s)	320
HaeIII	GGCC	2 cut(s)	100, 165
HgaI	GACGC	1 cut(s)	488
Hin1II	CATG	4 cut(s)	61, 99, 469, 511
HindIII	AAGCTT	1 cut(s)	25
HphI	GGTGA	1 cut(s)	318
Hpy166II	GTNNAC	2 cut(s)	178, 216
Hpy188I	TCNGA	1 cut(s)	203
Hpy188III	TCNNGA	3 cut(s)	58, 466, 491
Hpy8I	GTNNAC	2 cut(s)	178, 216
HpyAV	CCTTC	2 cut(s)	369, 462
HpyCH4III	ACNGT	4 cut(s)	50, 55, 224, 307
HpyCH4IV	ACGT	2 cut(s)	190, 433
HpyCH4V	TGCA	3 cut(s)	21, 129, 507
HpyF10VI	GCNNNNNNNGC	2 cut(s)	97, 348
HpyF3I	CTNAG	3 cut(s)	28, 200, 352
HpySE526I	ACGT	2 cut(s)	190, 433
Hsp92II	CATG	4 cut(s)	61, 99, 469, 511
Kzo9I	GATC	1 cut(s)	37
LpnPI	CCDG	3 cut(s)	143, 166, 507
Lsp1109I	GCAGC	1 cut(s)	331
MaeI	CTAG	2 cut(s)	315, 339
MaeII	ACGT	2 cut(s)	190, 433
MaeIII	GTNAC	3 cut(s)	110, 119, 536
MalI	GATC	1 cut(s)	39
MboI	GATC	1 cut(s)	37
MboII	GAAGA	5 cut(s)	77, 377, 447, 506, 509
MflI	RGATCY	1 cut(s)	37
MhlI	GDGCHC	2 cut(s)	93, 151
MlsI	TGGCCA	1 cut(s)	165
MluCI	AATT	2 cut(s)	137, 204
MluNI	TGGCCA	1 cut(s)	165
MmeI	TCCRAC	1 cut(s)	495
MnlI	CCTC	5 cut(s)	111, 280, 388, 399, 402
Mox20I	TGGCCA	1 cut(s)	165
MscI	TGGCCA	1 cut(s)	165
MseI	TTAA	4 cut(s)	234, 246, 332, 474
MslI	CAYNNNNRTG	1 cut(s)	171
Msp20I	TGGCCA	1 cut(s)	165
MwoI	GCNNNNNNNGC	2 cut(s)	97, 348
NcoI	CCATGG	1 cut(s)	95
NdeI	CATATG	1 cut(s)	168
NdeII	GATC	1 cut(s)	37
NlaIII	CATG	4 cut(s)	61, 99, 469, 511
NlaIV	GGNNCC	2 cut(s)	92, 450
NmuCI	GTSAC	1 cut(s)	119
NspI	RCATGY	1 cut(s)	511
PagI	TCATGA	2 cut(s)	57, 465
PkrI	GCNGC	1 cut(s)	321
Ppu21I	YACGTR	1 cut(s)	434
PpuMI	RGGWCCY	1 cut(s)	449
PsiI	TTATAA	1 cut(s)	347
Psp5II	RGGWCCY	1 cut(s)	449
PspN4I	GGNNCC	2 cut(s)	92, 450
PspPI	GGNCC	1 cut(s)	449
PspPPI	RGGWCCY	1 cut(s)	449
PsuI	RGATCY	1 cut(s)	37
RsaI	GTAC	3 cut(s)	52, 215, 226
RsaNI	GTAC	3 cut(s)	51, 214, 225
RseI	CAYNNNNRTG	1 cut(s)	171
SaqAI	TTAA	4 cut(s)	234, 246, 332, 474
SatI	GCNGC	1 cut(s)	320
Sau3AI	GATC	1 cut(s)	37
Sau96I	GGNCC	1 cut(s)	449
ScaI	AGTACT	1 cut(s)	226
SduI	GDGCHC	2 cut(s)	93, 151
SinI	GGWCC	1 cut(s)	449
SmiMI	CAYNNNNRTG	1 cut(s)	171
SmlI	CTYRAG	1 cut(s)	489
SmoI	CTYRAG	1 cut(s)	489
Sse9I	AATT	2 cut(s)	137, 204
SsiI	CCGC	1 cut(s)	534
SspMI	CTAG	2 cut(s)	315, 339
StyI	CCWWGG	2 cut(s)	95, 104
TaaI	ACNGT	4 cut(s)	50, 55, 224, 307
TaiI	ACGT	2 cut(s)	193, 436
TaqI	TCGA	2 cut(s)	555, 568
TasI	AATT	2 cut(s)	137, 204
TatI	WGTACW	3 cut(s)	50, 213, 224
Tru1I	TTAA	4 cut(s)	234, 246, 332, 474
Tru9I	TTAA	4 cut(s)	234, 246, 332, 474
TscAI	CASTG	2 cut(s)	13, 360
TseFI	GTSAC	1 cut(s)	119
TseI	GCWGC	1 cut(s)	319
Tsp45I	GTSAC	1 cut(s)	119
TspDTI	ATGAA	6 cut(s)	17, 98, 185, 393, 454, 482
TspRI	CASTG	2 cut(s)	13, 360
VpaK11BI	GGWCC	1 cut(s)	449
XapI	RAATTY	1 cut(s)	137
XceI	RCATGY	1 cut(s)	511
XspI	CTAG	2 cut(s)	315, 339
ZrmI	AGTACT	1 cut(s)	226

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.