Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0009993

Physical Location & Seq

Genomic Coordinates Forward (+)

20082907 .. 20083979

Gene Structure 1073 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1212200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGGAGAAAAAGAATTTGGTGAGCAACAGCTTGAAAGATCATGCTGGTATTGTCACCAGAACCATTAGGAGCAGCAAGACTACCTATGAAGAAGAAGATTACAATATTGATGGGTTTTCATGGCCCCCAAGGTTGTACACTTGTAGCTTCTGCAAGAGAGAATTTAGATCTGCTCAAGCTCTTGGTGGGCATATGAATGTTCACCGAAGAGACCGAGCCAGGCTCAAAGGCTCACCCCCAAGAGACGGTCAGTACACTAGCACTATTCTTAACCTTAGCCTCAACAAAGTGCCATACCCTAACCCTAATTTTTCATCAACATCATCACCAACCTCACCATCCTCCTTGATTTCACCATTTAGTAGCACATTACCCTCTTTGATATCACCATCAGCTCCTCCTTCACCTACTTTTTTGGTGCCATCTAGCGAAAATATGAAATGGGTTGTGGGAGACACCATTTTTAATAACCCTCGAAACCTCGAAGGCTCGGATCTTGGCACTAAAGTTAAGAAGAGTGAAAAATCATTTTGTGAAGTAGGAGATCGTCAACGTGATGGTTTCATTGGGGAAGAAAAACATGGGTGCATAAAGACTTTCAAGGCAGCTGATCATCCTCATCATCCGATTCTTAGGTTGGACTTGGAGATTGGTCTGCCTGGTGACTCAAATAAGGAGAACTTAGATTTGGAACTTCGATTGGGATACTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0008361 GO:0009653 GO:0009719 GO:0009725 GO:0009755 GO:0009791 GO:0009889 GO:0009908 GO:0009987 GO:0010033 GO:0010093 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032535 GO:0032870 GO:0042127 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048444 GO:0048449 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048859 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071495 GO:0071840 GO:0080090 GO:0090066 GO:0090567 GO:0090691 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

238

Amino Acids

26.38

Weight (kDa)

8.83

Isoelectric Point (pI)

51.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	46 - 70	7.8e-07	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009993)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23130
fragaria_vesca	FvH4_3g12221 FvH4_3g12221 FvH4_3g12221 FvH4_3g12221 FvH4_3g12221 FvH4_4g03010
malus_domestica	MD13G1209400.v1.1 MD16G1212200.v1.1
prunus_persica	Prupe.1G034100_v2.0.a1 Prupe.1G034100_v2.0.a1
pyrus_communis	pycom16g17820
rosa_chinensis	RchiOBHm_Chr4g0391201
rosa_laevigata	RLG00000009878
rosa_multiflora	Rmu_sc0000040.1_g000012
rosa_roxburghii	Rroxscaffold_5G00336990
rosa_rugosa	Rorug03G0335100
rosa_samantha	Rh4BG030800 Rh4CG039100 Rh4DG033500
rosa_wichuraiana	Rw4G002810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	418
AclWI	GGATC	1 cut(s)	501
AcsI	RAATTY	2 cut(s)	13, 161
AfaI	GTAC	2 cut(s)	137, 254
AfiI	CCNNNNNNNGG	1 cut(s)	245
AgsI	TTSAA	2 cut(s)	34, 601
AjnI	CCWGG	2 cut(s)	218, 658
AjuI	GAANNNNNNNTTGG	3 cut(s)	31, 671, 703
AluBI	AGCT	5 cut(s)	30, 147, 179, 395, 608
AluI	AGCT	5 cut(s)	30, 147, 179, 395, 608
Alw26I	GTCTC	3 cut(s)	204, 237, 447
AlwI	GGATC	1 cut(s)	501
AoxI	GGCC	1 cut(s)	122
ApeKI	GCWGC	2 cut(s)	72, 605
ApoI	RAATTY	2 cut(s)	13, 161
AspS9I	GGNCC	1 cut(s)	123
BanI	GGYRCC	1 cut(s)	418
BbvI	GCAGC	2 cut(s)	84, 617
BccI	CCATC	5 cut(s)	104, 346, 397, 430, 551
BciT130I	CCWGG	2 cut(s)	220, 660
BciVI	GTATCC	1 cut(s)	698
BclI	TGATCA	1 cut(s)	610
BcoDI	GTCTC	3 cut(s)	204, 237, 447
BfaI	CTAG	3 cut(s)	258, 426, 712
BfuI	GTATCC	1 cut(s)	698
BglII	AGATCT	1 cut(s)	167
BisI	GCNGC	2 cut(s)	73, 606
BlsI	GCNGC	2 cut(s)	74, 607
Bme1390I	CCNGG	2 cut(s)	220, 660
BmgT120I	GGNCC	1 cut(s)	123
BmiI	GGNNCC	2 cut(s)	125, 420
BmrFI	CCNGG	2 cut(s)	220, 660
BplI	GAGNNNNNCTC	2 cut(s)	207, 239
Bpu10I	CCTNAGC	1 cut(s)	275
BpuEI	CTTGAG	1 cut(s)	159
BsaI	GGTCTC	1 cut(s)	204
BsaJI	CCNNGG	1 cut(s)	128
Bsc4I	CCNNNNNNNGG	1 cut(s)	245
BseBI	CCWGG	2 cut(s)	220, 660
BseDI	CCNNGG	1 cut(s)	128
BseGI	GGATG	3 cut(s)	338, 613, 622
BseLI	CCNNNNNNNGG	1 cut(s)	245
BseRI	GAGGAG	1 cut(s)	387
BseXI	GCAGC	2 cut(s)	84, 617
BshFI	GGCC	1 cut(s)	124
BshNI	GGYRCC	1 cut(s)	418
BslI	CCNNNNNNNGG	1 cut(s)	245
BsmAI	GTCTC	3 cut(s)	204, 237, 447
BsmBI	CGTCTC	1 cut(s)	237
BsnI	GGCC	1 cut(s)	124
Bso31I	GGTCTC	1 cut(s)	204
Bsp1407I	TGTACA	1 cut(s)	135
Bsp143I	GATC	5 cut(s)	37, 167, 493, 544, 610
BspANI	GGCC	1 cut(s)	124
BspLI	GGNNCC	2 cut(s)	125, 420
BspPI	GGATC	1 cut(s)	501
BspT107I	GGYRCC	1 cut(s)	418
BspTNI	GGTCTC	1 cut(s)	204
BsrGI	TGTACA	1 cut(s)	135
BssECI	CCNNGG	1 cut(s)	128
BssMI	GATC	5 cut(s)	37, 167, 493, 544, 610
BssT1I	CCWWGG	1 cut(s)	128
Bst2UI	CCWGG	2 cut(s)	220, 660
Bst4CI	ACNGT	1 cut(s)	248
Bst6I	CTCTTC	2 cut(s)	202, 509
BstAUI	TGTACA	1 cut(s)	135
BstDEI	CTNAG	3 cut(s)	275, 632, 682
BstF5I	GGATG	3 cut(s)	338, 613, 622
BstKTI	GATC	5 cut(s)	40, 170, 496, 547, 613
BstMAI	GTCTC	3 cut(s)	204, 237, 447
BstMBI	GATC	5 cut(s)	37, 167, 493, 544, 610
BstNI	CCWGG	2 cut(s)	220, 660
BstSCI	CCNGG	2 cut(s)	218, 658
BstV1I	GCAGC	2 cut(s)	84, 617
BstX2I	RGATCY	2 cut(s)	167, 493
BstYI	RGATCY	2 cut(s)	167, 493
BsuI	GTATCC	1 cut(s)	698
BsuRI	GGCC	1 cut(s)	124
BtsCI	GGATG	3 cut(s)	338, 613, 622
Cfr13I	GGNCC	1 cut(s)	123
Csp6I	GTAC	2 cut(s)	136, 253
CviAII	CATG	3 cut(s)	41, 120, 581
CviQI	GTAC	2 cut(s)	136, 253
DdeI	CTNAG	3 cut(s)	275, 632, 682
DpnI	GATC	5 cut(s)	39, 169, 495, 546, 612
DpnII	GATC	5 cut(s)	37, 167, 493, 544, 610
Eam1104I	CTCTTC	2 cut(s)	202, 509
EarI	CTCTTC	2 cut(s)	202, 509
Eco130I	CCWWGG	1 cut(s)	128
Eco31I	GGTCTC	1 cut(s)	204
Eco32I	GATATC	1 cut(s)	384
EcoRII	CCWGG	2 cut(s)	218, 658
EcoRV	GATATC	1 cut(s)	384
EcoT14I	CCWWGG	1 cut(s)	128
ErhI	CCWWGG	1 cut(s)	128
Esp3I	CGTCTC	1 cut(s)	237
FaeI	CATG	3 cut(s)	44, 123, 584
FaiI	YATR	9 cut(s)	42, 87, 121, 192, 194, 295, 437, 582, 590
FalI	AAGNNNNNCTT	2 cut(s)	665, 697
FatI	CATG	3 cut(s)	40, 119, 580
FauNDI	CATATG	1 cut(s)	192
FbaI	TGATCA	1 cut(s)	610
Fnu4HI	GCNGC	2 cut(s)	73, 606
FokI	GGATG	3 cut(s)	325, 600, 609
Fsp4HI	GCNGC	2 cut(s)	73, 606
FspBI	CTAG	3 cut(s)	258, 426, 712
GluI	GCNGC	2 cut(s)	73, 606
HaeIII	GGCC	1 cut(s)	124
Hin1II	CATG	3 cut(s)	44, 123, 584
HincII	GTYRAC	1 cut(s)	551
HindII	GTYRAC	1 cut(s)	551
HinfI	GANTC	2 cut(s)	628, 665
Hpy166II	GTNNAC	4 cut(s)	138, 202, 255, 551
Hpy188I	TCNGA	2 cut(s)	493, 627
Hpy8I	GTNNAC	4 cut(s)	138, 202, 255, 551
HpyAV	CCTTC	2 cut(s)	411, 479
HpyCH4III	ACNGT	1 cut(s)	248
HpyCH4IV	ACGT	1 cut(s)	553
HpyCH4V	TGCA	2 cut(s)	153, 588
HpyF3I	CTNAG	3 cut(s)	275, 632, 682
HpySE526I	ACGT	1 cut(s)	553
Hsp92II	CATG	3 cut(s)	44, 123, 584
Ksp22I	TGATCA	1 cut(s)	610
Kzo9I	GATC	5 cut(s)	37, 167, 493, 544, 610
LmnI	GCTCC	2 cut(s)	69, 400
LpnPI	CCDG	6 cut(s)	30, 70, 205, 232, 645, 672
Lsp1109I	GCAGC	2 cut(s)	84, 617
MaeI	CTAG	3 cut(s)	258, 426, 712
MaeII	ACGT	1 cut(s)	553
MaeIII	GTNAC	2 cut(s)	52, 662
MalI	GATC	5 cut(s)	39, 169, 495, 546, 612
MboI	GATC	5 cut(s)	37, 167, 493, 544, 610
MboII	GAAGA	6 cut(s)	101, 104, 107, 219, 526, 584
MflI	RGATCY	2 cut(s)	167, 493
MluCI	AATT	3 cut(s)	13, 161, 307
MlyI	GAGTC	1 cut(s)	659
MmeI	TCCRAC	1 cut(s)	618
MnlI	CCTC	8 cut(s)	290, 343, 352, 385, 408, 483, 491, 627
MseI	TTAA	3 cut(s)	270, 465, 510
MslI	CAYNNNNRTG	1 cut(s)	195
MspA1I	CMGCKG	1 cut(s)	608
MspR9I	CCNGG	2 cut(s)	220, 660
MvaI	CCWGG	2 cut(s)	220, 660
NdeI	CATATG	1 cut(s)	192
NdeII	GATC	5 cut(s)	37, 167, 493, 544, 610
NlaIII	CATG	3 cut(s)	44, 123, 584
NlaIV	GGNNCC	2 cut(s)	125, 420
NmuCI	GTSAC	2 cut(s)	52, 662
PfeI	GAWTC	1 cut(s)	628
PkrI	GCNGC	2 cut(s)	74, 607
PleI	GAGTC	1 cut(s)	659
PpsI	GAGTC	1 cut(s)	659
Psp6I	CCWGG	2 cut(s)	218, 658
PspGI	CCWGG	2 cut(s)	218, 658
PspN4I	GGNNCC	2 cut(s)	125, 420
PspPI	GGNCC	1 cut(s)	123
PsuI	RGATCY	2 cut(s)	167, 493
PvuII	CAGCTG	1 cut(s)	608
RsaI	GTAC	2 cut(s)	137, 254
RsaNI	GTAC	2 cut(s)	136, 253
RseI	CAYNNNNRTG	1 cut(s)	195
SaqAI	TTAA	3 cut(s)	270, 465, 510
SatI	GCNGC	2 cut(s)	73, 606
Sau3AI	GATC	5 cut(s)	37, 167, 493, 544, 610
Sau96I	GGNCC	1 cut(s)	123
SchI	GAGTC	1 cut(s)	659
ScrFI	CCNGG	2 cut(s)	220, 660
SmiMI	CAYNNNNRTG	1 cut(s)	195
SmlI	CTYRAG	1 cut(s)	174
SmoI	CTYRAG	1 cut(s)	174
Sse9I	AATT	3 cut(s)	13, 161, 307
SspI	AATATT	1 cut(s)	106
SspMI	CTAG	3 cut(s)	258, 426, 712
StyD4I	CCNGG	2 cut(s)	218, 658
StyI	CCWWGG	1 cut(s)	128
TaaI	ACNGT	1 cut(s)	248
TaiI	ACGT	1 cut(s)	556
TaqI	TCGA	3 cut(s)	475, 483, 697
TaqII	GACCGA	1 cut(s)	228
TasI	AATT	3 cut(s)	13, 161, 307
TatI	WGTACW	2 cut(s)	135, 252
TfiI	GAWTC	1 cut(s)	628
Tru1I	TTAA	3 cut(s)	270, 465, 510
Tru9I	TTAA	3 cut(s)	270, 465, 510
TseFI	GTSAC	2 cut(s)	52, 662
TseI	GCWGC	2 cut(s)	72, 605
Tsp45I	GTSAC	2 cut(s)	52, 662
TspDTI	ATGAA	6 cut(s)	102, 108, 209, 303, 452, 553
XapI	RAATTY	2 cut(s)	13, 161
XspI	CTAG	3 cut(s)	258, 426, 712

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.