Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000040.1

Orthogroup ID

OG0009993

Physical Location & Seq

Genomic Coordinates Forward (+)

53239 .. 53922

Gene Structure 684 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000040.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

atgcagaggaacactggcttctgcaaaagcttggtgaaagaccacattactaccatgactagggccactgatggagattccaacaacaagaagatgaagaatattgaagatgatgaagactatatgaatgtgtatccatggcctccgaggtcttacacgtgtagcttctgcaagagagaattcaaatctgctcaagctctgggtggccatatgaatgttcacaggaaagaccgagccaggctcagaagctcacccccaaccgattttattggtcagtacactcacagtactatacttaatctcaacctcaaacctaaccctaaccctaatttcgcatcctcaccaccaccatcatcatctcccttctcttctgtttcaactcggcagctcccaccgttaactactagctctagctctgtaccttcttggatatcacaaccttctcatccccctcctacatttccatcaccatttgatactttccatagtgaaaacatgaaatgggctgtgggtggtaccctttccactcctttaaacctcaaaactttggatttaagtactcaaatgaagattaatacagagtctcaagaagatggatgcatgaaattggacttggaaattggtgctcttggcggtaactcaaaggatgacatcgatttggagcttcgattaggctactcctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0008361 GO:0009653 GO:0009719 GO:0009725 GO:0009755 GO:0009791 GO:0009889 GO:0009908 GO:0009987 GO:0010033 GO:0010093 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032535 GO:0032870 GO:0042127 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048444 GO:0048449 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048859 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071495 GO:0071840 GO:0080090 GO:0090066 GO:0090567 GO:0090691 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

227

Amino Acids

25.23

Weight (kDa)

7.7

Isoelectric Point (pI)

61.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009993)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23130
fragaria_vesca	FvH4_3g12221 FvH4_3g12221 FvH4_3g12221 FvH4_3g12221 FvH4_3g12221 FvH4_4g03010
malus_domestica	MD13G1209400.v1.1 MD16G1212200.v1.1
prunus_persica	Prupe.1G034100_v2.0.a1 Prupe.1G034100_v2.0.a1
pyrus_communis	pycom16g17820
rosa_chinensis	RchiOBHm_Chr4g0391201
rosa_laevigata	RLG00000009878
rosa_multiflora	Rmu_sc0000040.1_g000012
rosa_roxburghii	Rroxscaffold_5G00336990
rosa_rugosa	Rorug03G0335100
rosa_samantha	Rh4BG030800 Rh4CG039100 Rh4DG033500
rosa_wichuraiana	Rw4G002810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	515
AccB1I	GGYRCC	1 cut(s)	515
AciI	CCGC	1 cut(s)	633
AcoI	YGGCCR	1 cut(s)	205
AcsI	RAATTY	1 cut(s)	179
AcvI	CACGTG	1 cut(s)	159
AfaI	GTAC	5 cut(s)	278, 289, 420, 517, 559
AfiI	CCNNNNNNNGG	1 cut(s)	60
AflIII	ACRYGT	2 cut(s)	156, 158
AgsI	TTSAA	3 cut(s)	107, 184, 378
AjnI	CCWGG	1 cut(s)	236
AjuI	GAANNNNNNNTTGG	2 cut(s)	596, 628
AluBI	AGCT	8 cut(s)	30, 165, 197, 249, 388, 408, 414, 664
AluI	AGCT	8 cut(s)	30, 165, 197, 249, 388, 408, 414, 664
Alw21I	GWGCWC	1 cut(s)	628
Alw26I	GTCTC	1 cut(s)	588
AoxI	GGCC	3 cut(s)	63, 140, 205
ApeKI	GCWGC	1 cut(s)	385
ApoI	RAATTY	1 cut(s)	179
AseI	ATTAAT	1 cut(s)	573
Asp718I	GGTACC	1 cut(s)	515
AspS9I	GGNCC	1 cut(s)	63
AsuHPI	GGTGA	4 cut(s)	46, 243, 333, 459
BalI	TGGCCA	1 cut(s)	207
BanI	GGYRCC	1 cut(s)	515
BbrPI	CACGTG	1 cut(s)	159
BbsI	GAAGAC	1 cut(s)	123
Bbv12I	GWGCWC	1 cut(s)	628
BbvI	GCAGC	1 cut(s)	397
BccI	CCATC	4 cut(s)	65, 358, 472, 587
BciT130I	CCWGG	1 cut(s)	238
BciVI	GTATCC	1 cut(s)	144
BcoDI	GTCTC	1 cut(s)	588
BfaI	CTAG	4 cut(s)	60, 405, 411, 682
BfuI	GTATCC	1 cut(s)	144
BisI	GCNGC	1 cut(s)	386
BlsI	GCNGC	1 cut(s)	387
BmcAI	AGTACT	2 cut(s)	289, 559
Bme1390I	CCNGG	1 cut(s)	238
BmgT120I	GGNCC	1 cut(s)	63
BmiI	GGNNCC	1 cut(s)	517
BmrFI	CCNGG	1 cut(s)	238
BmsI	GCATC	2 cut(s)	344, 587
BpiI	GAAGAC	1 cut(s)	123
BplI	GAGNNNNNCTC	2 cut(s)	225, 257
BpuEI	CTTGAG	2 cut(s)	177, 570
Bsa29I	ATCGAT	1 cut(s)	654
BsaAI	YACGTR	1 cut(s)	159
BsaJI	CCNNGG	2 cut(s)	137, 146
Bsc4I	CCNNNNNNNGG	1 cut(s)	60
Bse1I	ACTGG	1 cut(s)	19
BseBI	CCWGG	1 cut(s)	238
BseCI	ATCGAT	1 cut(s)	654
BseDI	CCNNGG	2 cut(s)	137, 146
BseGI	GGATG	4 cut(s)	335, 445, 602, 652
BseLI	CCNNNNNNNGG	1 cut(s)	60
BseMII	CTCAG	1 cut(s)	256
BseNI	ACTGG	1 cut(s)	19
BseXI	GCAGC	1 cut(s)	397
BshFI	GGCC	3 cut(s)	65, 142, 207
BshNI	GGYRCC	1 cut(s)	515
BshVI	ATCGAT	1 cut(s)	654
BsiHKAI	GWGCWC	1 cut(s)	628
BslI	CCNNNNNNNGG	1 cut(s)	60
BsmAI	GTCTC	1 cut(s)	588
BsnI	GGCC	3 cut(s)	65, 142, 207
Bsp1286I	GDGCHC	1 cut(s)	628
Bsp19I	CCATGG	1 cut(s)	137
BspACI	CCGC	1 cut(s)	633
BspANI	GGCC	3 cut(s)	65, 142, 207
BspCNI	CTCAG	1 cut(s)	255
BspDI	ATCGAT	1 cut(s)	654
BspLI	GGNNCC	1 cut(s)	517
BspT107I	GGYRCC	1 cut(s)	515
BsrI	ACTGG	1 cut(s)	19
BssECI	CCNNGG	2 cut(s)	137, 146
BssT1I	CCWWGG	1 cut(s)	137
Bst2UI	CCWGG	1 cut(s)	238
Bst4CI	ACNGT	2 cut(s)	287, 396
Bst6I	CTCTTC	1 cut(s)	373
BstBAI	YACGTR	1 cut(s)	159
BstDEI	CTNAG	1 cut(s)	242
BstDSI	CCRYGG	1 cut(s)	137
BstF5I	GGATG	4 cut(s)	335, 445, 602, 652
BstMAI	GTCTC	1 cut(s)	588
BstNI	CCWGG	1 cut(s)	238
BstSCI	CCNGG	1 cut(s)	236
BstV1I	GCAGC	1 cut(s)	397
BstV2I	GAAGAC	1 cut(s)	123
Bsu15I	ATCGAT	1 cut(s)	654
BsuI	GTATCC	1 cut(s)	144
BsuRI	GGCC	3 cut(s)	65, 142, 207
BsuTUI	ATCGAT	1 cut(s)	654
BtgI	CCRYGG	1 cut(s)	137
BtsCI	GGATG	4 cut(s)	335, 445, 602, 652
BtsIMutI	CAGTG	2 cut(s)	12, 66
Cfr13I	GGNCC	1 cut(s)	63
ClaI	ATCGAT	1 cut(s)	654
Csp6I	GTAC	5 cut(s)	277, 288, 419, 516, 558
CviAII	CATG	4 cut(s)	55, 138, 496, 601
CviQI	GTAC	5 cut(s)	277, 288, 419, 516, 558
DdeI	CTNAG	1 cut(s)	242
DraI	TTTAAA	1 cut(s)	534
EaeI	YGGCCR	1 cut(s)	205
Eam1104I	CTCTTC	1 cut(s)	373
EarI	CTCTTC	1 cut(s)	373
Eco130I	CCWWGG	1 cut(s)	137
Eco32I	GATATC	1 cut(s)	432
Eco72I	CACGTG	1 cut(s)	159
EcoRI	GAATTC	1 cut(s)	179
EcoRII	CCWGG	1 cut(s)	236
EcoRV	GATATC	1 cut(s)	432
EcoT14I	CCWWGG	1 cut(s)	137
EcoT22I	ATGCAT	1 cut(s)	602
ErhI	CCWWGG	1 cut(s)	137
FaeI	CATG	4 cut(s)	58, 141, 499, 604
FatI	CATG	4 cut(s)	54, 137, 495, 600
FauNDI	CATATG	1 cut(s)	210
Fnu4HI	GCNGC	1 cut(s)	386
FokI	GGATG	4 cut(s)	322, 432, 609, 659
Fsp4HI	GCNGC	1 cut(s)	386
FspBI	CTAG	4 cut(s)	60, 405, 411, 682
GluI	GCNGC	1 cut(s)	386
HaeIII	GGCC	3 cut(s)	65, 142, 207
Hin1II	CATG	4 cut(s)	58, 141, 499, 604
HincII	GTYRAC	1 cut(s)	399
HindII	GTYRAC	1 cut(s)	399
HindIII	AAGCTT	1 cut(s)	28
HinfI	GANTC	2 cut(s)	77, 581
HpaI	GTTAAC	1 cut(s)	399
HphI	GGTGA	4 cut(s)	46, 243, 333, 459
Hpy166II	GTNNAC	3 cut(s)	220, 279, 399
Hpy188I	TCNGA	2 cut(s)	147, 245
Hpy188III	TCNNGA	1 cut(s)	587
Hpy8I	GTNNAC	3 cut(s)	220, 279, 399
HpyAV	CCTTC	3 cut(s)	373, 432, 450
HpyCH4III	ACNGT	2 cut(s)	287, 396
HpyCH4IV	ACGT	1 cut(s)	158
HpyCH4V	TGCA	4 cut(s)	4, 24, 171, 600
HpyF3I	CTNAG	1 cut(s)	242
HpySE526I	ACGT	1 cut(s)	158
Hsp92II	CATG	4 cut(s)	58, 141, 499, 604
KpnI	GGTACC	1 cut(s)	519
KspAI	GTTAAC	1 cut(s)	399
LmnI	GCTCC	2 cut(s)	393, 661
LpnPI	CCDG	4 cut(s)	185, 208, 223, 250
Lsp1109I	GCAGC	1 cut(s)	397
LweI	GCATC	2 cut(s)	344, 587
MaeI	CTAG	4 cut(s)	60, 405, 411, 682
MaeII	ACGT	1 cut(s)	158
MaeIII	GTNAC	1 cut(s)	635
MboII	GAAGA	7 cut(s)	103, 109, 119, 128, 360, 580, 602
MhlI	GDGCHC	1 cut(s)	628
MlsI	TGGCCA	1 cut(s)	207
MluCI	AATT	4 cut(s)	179, 328, 605, 618
MluNI	TGGCCA	1 cut(s)	207
MlyI	GAGTC	1 cut(s)	590
MmeI	TCCRAC	1 cut(s)	105
MnlI	CCTC	6 cut(s)	141, 153, 317, 349, 462, 548
Mox20I	TGGCCA	1 cut(s)	207
Mph1103I	ATGCAT	1 cut(s)	602
MscI	TGGCCA	1 cut(s)	207
MseI	TTAA	5 cut(s)	297, 398, 533, 554, 573
MslI	CAYNNNNRTG	1 cut(s)	213
Msp20I	TGGCCA	1 cut(s)	207
MspR9I	CCNGG	1 cut(s)	238
MvaI	CCWGG	1 cut(s)	238
NcoI	CCATGG	1 cut(s)	137
NdeI	CATATG	1 cut(s)	210
NlaIII	CATG	4 cut(s)	58, 141, 499, 604
NlaIV	GGNNCC	1 cut(s)	517
NmeAIII	GCCGAG	1 cut(s)	361
NsiI	ATGCAT	1 cut(s)	602
PfeI	GAWTC	1 cut(s)	77
PkrI	GCNGC	1 cut(s)	387
PleI	GAGTC	1 cut(s)	589
PmaCI	CACGTG	1 cut(s)	159
PmlI	CACGTG	1 cut(s)	159
PpsI	GAGTC	1 cut(s)	589
Ppu21I	YACGTR	1 cut(s)	159
PshBI	ATTAAT	1 cut(s)	573
Psp6I	CCWGG	1 cut(s)	236
PspCI	CACGTG	1 cut(s)	159
PspGI	CCWGG	1 cut(s)	236
PspN4I	GGNNCC	1 cut(s)	517
PspPI	GGNCC	1 cut(s)	63
RsaI	GTAC	5 cut(s)	278, 289, 420, 517, 559
RsaNI	GTAC	5 cut(s)	277, 288, 419, 516, 558
RseI	CAYNNNNRTG	1 cut(s)	213
SaqAI	TTAA	5 cut(s)	297, 398, 533, 554, 573
SatI	GCNGC	1 cut(s)	386
Sau96I	GGNCC	1 cut(s)	63
ScaI	AGTACT	2 cut(s)	289, 559
SchI	GAGTC	1 cut(s)	590
ScrFI	CCNGG	1 cut(s)	238
SduI	GDGCHC	1 cut(s)	628
SfaNI	GCATC	2 cut(s)	344, 587
SmiMI	CAYNNNNRTG	1 cut(s)	213
SmlI	CTYRAG	2 cut(s)	192, 585
SmoI	CTYRAG	2 cut(s)	192, 585
Sse9I	AATT	4 cut(s)	179, 328, 605, 618
SsiI	CCGC	1 cut(s)	633
SspI	AATATT	1 cut(s)	103
SspMI	CTAG	4 cut(s)	60, 405, 411, 682
StyD4I	CCNGG	1 cut(s)	236
StyI	CCWWGG	1 cut(s)	137
TaaI	ACNGT	2 cut(s)	287, 396
TaiI	ACGT	1 cut(s)	161
TaqI	TCGA	2 cut(s)	654, 667
TaqII	GACCGA	1 cut(s)	246
TasI	AATT	4 cut(s)	179, 328, 605, 618
TatI	WGTACW	3 cut(s)	276, 287, 557
TfiI	GAWTC	1 cut(s)	77
Tru1I	TTAA	5 cut(s)	297, 398, 533, 554, 573
Tru9I	TTAA	5 cut(s)	297, 398, 533, 554, 573
TscAI	CASTG	2 cut(s)	19, 73
TseI	GCWGC	1 cut(s)	385
TspDTI	ATGAA	7 cut(s)	110, 129, 140, 227, 512, 581, 617
TspRI	CASTG	2 cut(s)	19, 73
VspI	ATTAAT	1 cut(s)	573
XapI	RAATTY	1 cut(s)	179
XspI	CTAG	4 cut(s)	60, 405, 411, 682
ZrmI	AGTACT	2 cut(s)	289, 559
Zsp2I	ATGCAT	1 cut(s)	602

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.