Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015265

Physical Location & Seq

Genomic Coordinates Reverse (-)

8289379 .. 8290164

Gene Structure 786 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G23230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGGAGAGCTCAAACAGGAGCAGCAACAACCAATCACAAGATGACAAGCAAGCTCGTTTCCGGGGAGTTCGAAGAAGGCCTTGGGGAAAGTTTGCAGCAGAGATTCGAGACCCGTCGAGAAACGGTGCCCGTCTTTGGCTCGGGACATTTGAGACCGCTGAGGAGGCAGCAAGGGCTTATGACCGAGCAGCCTTTAACCTTAGGGGTCATCTCGCTATACTCAACTTCCCTAATGAGTATTATCCACGTATGGACGACTACTCGCTTCGCCCTCCTTATGCTTCTTCTTCTTCGTCGTCGTCATCGGGTTCAACTTCTACTAATGTGAGTCGACAAAACCAAAGAGAAGTTTTCGAGTTTGAGTATTTGGACGATAAGGTTCTTGAAGAACTTCTTGATTCAGAAGAAAGGAAGAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003700 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0042493 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

139

Amino Acids

16.1

Weight (kDa)

6.62

Isoelectric Point (pI)

69.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	19 - 70	4.4e-16	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015265)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23230
fragaria_vesca	FvH4_4g03460
malus_domestica	MD13G1212900.v1.1 MD16G1216500.v1.1
prunus_persica	Prupe.1G037800_v2.0.a1
pyrus_communis	pycom13g18470 pycom16g18110
rosa_chinensis	RchiOBHm_Chr4g0392461
rosa_laevigata	RLG00000009804
rosa_multiflora	Rmu_sc0004216.1_g000004 Rmu_sc0041365.1_g000001
rosa_roxburghii	Rroxscaffold_5G00337720
rosa_rugosa	Rorug03G0339000
rosa_samantha	Rh4BG038100 Rh4DG040100
rosa_wichuraiana	Rw4G003370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	125
AccI	GTMKAC	1 cut(s)	331
AciI	CCGC	1 cut(s)	156
AfiI	CCNNNNNNNGG	1 cut(s)	135
AgsI	TTSAA	2 cut(s)	312, 386
AjuI	GAANNNNNNNTTGG	2 cut(s)	64, 96
AluBI	AGCT	2 cut(s)	9, 53
AluI	AGCT	2 cut(s)	9, 53
Alw21I	GWGCWC	1 cut(s)	11
Alw26I	GTCTC	2 cut(s)	102, 146
Ama87I	CYCGRG	1 cut(s)	140
AoxI	GGCC	1 cut(s)	77
ApeKI	GCWGC	4 cut(s)	21, 95, 167, 188
Asp700I	GAANNNNTTC	1 cut(s)	390
AsuC2I	CCSGG	1 cut(s)	62
AsuII	TTCGAA	1 cut(s)	70
AvaI	CYCGRG	1 cut(s)	140
AxyI	CCTNAGG	1 cut(s)	200
BaeGI	GKGCMC	1 cut(s)	130
BanI	GGYRCC	1 cut(s)	125
BanII	GRGCYC	1 cut(s)	11
Bbv12I	GWGCWC	1 cut(s)	11
BbvCI	CCTCAGC	1 cut(s)	159
BbvI	GCAGC	4 cut(s)	33, 107, 179, 200
BcnI	CCSGG	1 cut(s)	62
BcoDI	GTCTC	2 cut(s)	102, 146
BisI	GCNGC	4 cut(s)	22, 96, 168, 189
BlsI	GCNGC	4 cut(s)	23, 97, 169, 190
Bme1390I	CCNGG	1 cut(s)	62
BmeT110I	CYCGRG	1 cut(s)	140
BmiI	GGNNCC	1 cut(s)	127
BmrFI	CCNGG	1 cut(s)	62
Bpu10I	CCTNAGC	1 cut(s)	159
Bpu14I	TTCGAA	1 cut(s)	70
BpuMI	CCSGG	1 cut(s)	62
BsaAI	YACGTR	1 cut(s)	248
BsaI	GGTCTC	2 cut(s)	102, 146
BsaJI	CCNNGG	2 cut(s)	61, 80
Bsc4I	CCNNNNNNNGG	1 cut(s)	135
Bse21I	CCTNAGG	1 cut(s)	200
BseDI	CCNNGG	2 cut(s)	61, 80
BseLI	CCNNNNNNNGG	1 cut(s)	135
BseMII	CTCAG	1 cut(s)	150
BseRI	GAGGAG	1 cut(s)	176
BseSI	GKGCMC	1 cut(s)	130
BseXI	GCAGC	4 cut(s)	33, 107, 179, 200
BshFI	GGCC	1 cut(s)	79
BshNI	GGYRCC	1 cut(s)	125
BsiHKAI	GWGCWC	1 cut(s)	11
BsiHKCI	CYCGRG	1 cut(s)	140
BsiSI	CCGG	1 cut(s)	61
BslFI	GGGAC	1 cut(s)	157
BslI	CCNNNNNNNGG	1 cut(s)	135
BsmAI	GTCTC	2 cut(s)	102, 146
BsmFI	GGGAC	1 cut(s)	157
BsnI	GGCC	1 cut(s)	79
Bso31I	GGTCTC	2 cut(s)	102, 146
BsoBI	CYCGRG	1 cut(s)	140
Bsp119I	TTCGAA	1 cut(s)	70
Bsp1286I	GDGCHC	2 cut(s)	11, 130
BspACI	CCGC	1 cut(s)	156
BspANI	GGCC	1 cut(s)	79
BspCNI	CTCAG	1 cut(s)	151
BspLI	GGNNCC	1 cut(s)	127
BspT104I	TTCGAA	1 cut(s)	70
BspT107I	GGYRCC	1 cut(s)	125
BspTNI	GGTCTC	2 cut(s)	102, 146
BssECI	CCNNGG	2 cut(s)	61, 80
BssT1I	CCWWGG	1 cut(s)	80
Bst4CI	ACNGT	1 cut(s)	125
Bst6I	CTCTTC	1 cut(s)	407
BstBAI	YACGTR	1 cut(s)	248
BstBI	TTCGAA	1 cut(s)	70
BstC8I	GCNNGC	1 cut(s)	51
BstDEI	CTNAG	2 cut(s)	159, 200
BstMAI	GTCTC	2 cut(s)	102, 146
BstMWI	GCNNNNNNNGC	2 cut(s)	164, 173
BstSCI	CCNGG	1 cut(s)	60
BstSLI	GKGCMC	1 cut(s)	130
BstV1I	GCAGC	4 cut(s)	33, 107, 179, 200
Bsu36I	CCTNAGG	1 cut(s)	200
BsuRI	GGCC	1 cut(s)	79
Cac8I	GCNNGC	1 cut(s)	51
CviJI	RGCY	6 cut(s)	9, 53, 79, 139, 176, 191
CviKI_1	RGCY	6 cut(s)	9, 53, 79, 139, 176, 191
DdeI	CTNAG	2 cut(s)	159, 200
Eam1104I	CTCTTC	1 cut(s)	407
EarI	CTCTTC	1 cut(s)	407
Ecl136II	GAGCTC	1 cut(s)	9
Eco130I	CCWWGG	1 cut(s)	80
Eco147I	AGGCCT	1 cut(s)	79
Eco24I	GRGCYC	1 cut(s)	11
Eco31I	GGTCTC	2 cut(s)	102, 146
Eco53kI	GAGCTC	1 cut(s)	9
Eco81I	CCTNAGG	1 cut(s)	200
Eco88I	CYCGRG	1 cut(s)	140
EcoICRI	GAGCTC	1 cut(s)	9
EcoT14I	CCWWGG	1 cut(s)	80
EcoT38I	GRGCYC	1 cut(s)	11
ErhI	CCWWGG	1 cut(s)	80
FaiI	YATR	4 cut(s)	180, 218, 251, 279
FalI	AAGNNNNNCTT	4 cut(s)	64, 96, 378, 410
FaqI	GGGAC	1 cut(s)	157
FblI	GTMKAC	1 cut(s)	331
Fnu4HI	GCNGC	4 cut(s)	22, 96, 168, 189
FriOI	GRGCYC	1 cut(s)	11
Fsp4HI	GCNGC	4 cut(s)	22, 96, 168, 189
GluI	GCNGC	4 cut(s)	22, 96, 168, 189
HaeIII	GGCC	1 cut(s)	79
HapII	CCGG	1 cut(s)	61
HincII	GTYRAC	1 cut(s)	332
HindII	GTYRAC	1 cut(s)	332
HinfI	GANTC	3 cut(s)	103, 328, 398
HpaII	CCGG	1 cut(s)	61
Hpy166II	GTNNAC	1 cut(s)	332
Hpy188I	TCNGA	1 cut(s)	403
Hpy188III	TCNNGA	5 cut(s)	107, 117, 142, 383, 395
Hpy8I	GTNNAC	1 cut(s)	332
Hpy99I	CGWCG	3 cut(s)	118, 298, 301
HpyAV	CCTTC	1 cut(s)	69
HpyCH4III	ACNGT	1 cut(s)	125
HpyCH4IV	ACGT	1 cut(s)	247
HpyCH4V	TGCA	1 cut(s)	95
HpyF10VI	GCNNNNNNNGC	2 cut(s)	164, 173
HpyF3I	CTNAG	2 cut(s)	159, 200
HpySE526I	ACGT	1 cut(s)	247
LmnI	GCTCC	1 cut(s)	18
LpnPI	CCDG	1 cut(s)	74
Lsp1109I	GCAGC	4 cut(s)	33, 107, 179, 200
MaeII	ACGT	1 cut(s)	247
MboII	GAAGA	6 cut(s)	84, 276, 279, 282, 398, 416
MhlI	GDGCHC	2 cut(s)	11, 130
MlyI	GAGTC	1 cut(s)	337
MnlI	CCTC	3 cut(s)	154, 157, 282
MroXI	GAANNNNTTC	1 cut(s)	390
MseI	TTAA	1 cut(s)	195
MspA1I	CMGCKG	1 cut(s)	158
MspI	CCGG	1 cut(s)	61
MspR9I	CCNGG	1 cut(s)	62
MwoI	GCNNNNNNNGC	2 cut(s)	164, 173
NciI	CCSGG	1 cut(s)	62
NlaIV	GGNNCC	1 cut(s)	127
NspV	TTCGAA	1 cut(s)	70
PceI	AGGCCT	1 cut(s)	79
PdmI	GAANNNNTTC	1 cut(s)	390
PfeI	GAWTC	2 cut(s)	103, 398
PkrI	GCNGC	4 cut(s)	23, 97, 169, 190
PleI	GAGTC	1 cut(s)	336
PpsI	GAGTC	1 cut(s)	336
Ppu21I	YACGTR	1 cut(s)	248
Psp124BI	GAGCTC	1 cut(s)	11
PspN4I	GGNNCC	1 cut(s)	127
SacI	GAGCTC	1 cut(s)	11
SalI	GTCGAC	1 cut(s)	330
SaqAI	TTAA	1 cut(s)	195
SatI	GCNGC	4 cut(s)	22, 96, 168, 189
SchI	GAGTC	1 cut(s)	337
ScrFI	CCNGG	1 cut(s)	62
SduI	GDGCHC	2 cut(s)	11, 130
SetI	ASST	5 cut(s)	11, 55, 201, 250, 381
SfuI	TTCGAA	1 cut(s)	70
SseBI	AGGCCT	1 cut(s)	79
SsiI	CCGC	1 cut(s)	156
SstI	GAGCTC	1 cut(s)	11
StuI	AGGCCT	1 cut(s)	79
StyD4I	CCNGG	1 cut(s)	60
StyI	CCWWGG	1 cut(s)	80
TaaI	ACNGT	1 cut(s)	125
TaiI	ACGT	1 cut(s)	250
TaqI	TCGA	5 cut(s)	70, 106, 116, 331, 354
TaqII	GACCGA	1 cut(s)	198
TfiI	GAWTC	2 cut(s)	103, 398
Tru1I	TTAA	1 cut(s)	195
Tru9I	TTAA	1 cut(s)	195
TseI	GCWGC	4 cut(s)	21, 95, 167, 188
XmiI	GTMKAC	1 cut(s)	331
XmnI	GAANNNNTTC	1 cut(s)	390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.